| Definition | Pediococcus pentosaceus ATCC 25745, complete genome. |
|---|---|
| Accession | NC_008525 |
| Length | 1,832,387 |
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The map label for this gene is pepX
Identifier: 116492183
GI number: 116492183
Start: 425950
End: 428388
Strand: Reverse
Name: pepX
Synonym: PEPE_0380
Alternate gene names: 116492183
Gene position: 428388-425950 (Counterclockwise)
Preceding gene: 116492185
Following gene: 116492182
Centisome position: 23.38
GC content: 39.44
Gene sequence:
>2439_bases ATGAAAAACAATCAATTCGGTCGAATACGACTGGATCGCACTACTGAACTTGAAGAATTAAAAAACATTCATTTTATTGA TGCTGATTTATTAGCTGATCCGAAAGCCCAGTTAAAAGATTTTCTAAAACGTTCTTGCCTCGTAAGTAATAGCGAAGCAA CTTTCCAACAAAAGTTAAGCAATCTACTCGCAACCCCTGATCAAACTATGGCGGCTTTTTTCGAAAGTGATCAACCACTA ACTTTAGAAATTTTTATCTTATTAGAACTCCAATTACTTCAATTTGAGGCCGATACTGATTATCAAATTGAAGATCCACT TAGTGCCATTAGCAAAATTCAACTTCCAGAACTCGATCTCAAAAACTTTGAAACTAGTGCGGATGTGGCACACGCTTGGT ATAACTTACTAACTACCCACACCAAAAATGGAGAAGTCTATTTAGACCGCCTAACTCAACAAGGTTATTTCGTTAGTTTT TACCCAACGACCACTAAGCCCCTTTTCTTCAATGGAAAAGCCCAAGCAGTCTTCGATCCTCATCAGTTGATCCGTGAAGT AGTTTATGTGGAAGCCCCTCTCGATACTGATCATGATGGACAGCGCGATTTACTTAAAGCCGAAATTTTACGACCCGCTC AAACTGCTCATGGATACCAAGCTCCAGTCCTATATACAGCGAGTCCTTATAATCAAGGGACAAATGATAGTTATGGAGAA GCAATTACGCACAACGTTGATGTTCCTTTAACTGAAAAAGCGGTTCAAAAAATTTCTAAATCCGACGTCACTGCCGAACC CTTCAGCCAAACACTTCCTGCTGAACGTAAAGTGGCTGGAATGGCTACAAAAGCAAGTGAAACTTTTGCTCGCGAACAGC CCTATACTTTGAATAATTACTTCTTATCTCGGGGCTTCGCCGTGGTTTATGCTGCTGGGATTGGTACTCGAGATTCTGAT GGACTTCGTGATACGGGCTCTGTCGAAGAAACCATTTCAACTACAGCAATCATCGAATGGCTAGCCGGCAATCGACGCGC TTTTACTAACAAAACTGATAATCTTGAGATTAAAGCTTCTTGGTCTAATCATAAAATTGCCATGACGGGCCGCTCTTATC TAGGCACCCTCGCCACTGCAGCTGCAACCACTGGGGTGGAAGGCTTAGAGACCATCATTTCAGAAGCAGCCATTTCTAGC TGGTACGATTATTACCGAGACGGTGGTTTGGTCGCTGCTCCAGATACTTTCCAAGGCGAAGATATGGATGTCCTGGCCGC TGAAGTTTTAAGTCGTAAACATGATGCTGGGGATTATTTAGGCATCAAAGCCCACTTTGATCAAATTTTGAAACGTATTG AAAAAGATCAAGACCGTGACTCAGGTAATTATTCTAAATATTGGGACAGTAAGAATTATCTAAATAACGTTAAAAATATT AAAGCTGATATTATAATGGTTCATGGCCTCAATGACTGGAACGTTAAACCACGAAATGTAGGTAAGCTTTGGAACGCTGT TCGGGACTTACCGATCAATAAGAAAATTATTCTGCACCAAGGTCAACACATTTATATCAATGCTTTTCGTTCAATTGATT TCACCGATATGATGAATCTATGGCTTAGTTACAAACTTTTTGACGTTCAAAATGGGGCTAACGAAGTCCTTCCTAATGTA ATCATTCAAGATAATGTTGAACCTGAAACTTGGAACACTTATCAAGATTGGCAAGCAGCGGACGATGAGATTCGAGAATT TACACTACAAGCTAAAACGCTGGTGGATCGTGCTTCTGAAACTAAAAACGAGGCAGCTTCATTTCGAGATTCCCTTGATC CAGAATTTTTCGAAATGTATAAAAATGATTTAAAGCATTGGCATACTGATTTGCTAAACACAGAACATGCCACCAATGGT AAAAATCAAATGCGTAATAATCGCTTGATTTTTAAAACAGCACAAACTAAAGAAGATTGGTTAATCGATGGTACGCCTGA AGTTTCCGTTAACGTAGCAGTTAACCAACCATTTGGGATGCTTAGTTTCCAATTAGTTGATTTTGGAGATGCTAAACGTC TCAATCCTTCACCTAGCATTCTCCAACCACGCTCTTTGAGTGGTAGTTTTGATTGGCGGACTGATGATCTACGCGAATTC ACGCTTCAAAATGCGGTCACTCCTTGGAAAATGATTTCCAAAGGCCATATCAACTTACAAAATCGTACTAATAATTATTG TGTTGATGAAGTTAAACCCCATCAATTCTATGATGTAAAATTAGAACTTCAACCTACGTTCTACCGCTTATTAGCCGGTC ATCAATTAGGACTAGTTATCTATGCTACTGATTTTGAGACTACCATTCGTGGTAACCAAGAACTGCTTTACTCTTTACAG TTAAACCAAAGTCATTTAAAAATAAAGTTAGCACACTAA
Upstream 100 bases:
>100_bases AACGAACTTTTTCTTATTTTTAAAATATTTCAAGGCCTAATTATGTTTTATTGCTTTAGGCGTATAATATGAAACATAAA TATTGTGGAGGTTCCATGTT
Downstream 100 bases:
>100_bases TTTAATTTTTAAATTTATTATTGATTAAACCAATGGTAAATCAATATGGGTTCTGGTCAGTTTCCTTCAAATCTGATATT ATAAGCTTAAATTTAAGAAA
Product: x-prolyl-dipeptidyl aminopeptidase
Products: NA
Alternate protein names: X-Pro dipeptidyl-peptidase; X-prolyl-dipeptidyl aminopeptidase; X-PDAP
Number of amino acids: Translated: 812; Mature: 812
Protein sequence:
>812_residues MKNNQFGRIRLDRTTELEELKNIHFIDADLLADPKAQLKDFLKRSCLVSNSEATFQQKLSNLLATPDQTMAAFFESDQPL TLEIFILLELQLLQFEADTDYQIEDPLSAISKIQLPELDLKNFETSADVAHAWYNLLTTHTKNGEVYLDRLTQQGYFVSF YPTTTKPLFFNGKAQAVFDPHQLIREVVYVEAPLDTDHDGQRDLLKAEILRPAQTAHGYQAPVLYTASPYNQGTNDSYGE AITHNVDVPLTEKAVQKISKSDVTAEPFSQTLPAERKVAGMATKASETFAREQPYTLNNYFLSRGFAVVYAAGIGTRDSD GLRDTGSVEETISTTAIIEWLAGNRRAFTNKTDNLEIKASWSNHKIAMTGRSYLGTLATAAATTGVEGLETIISEAAISS WYDYYRDGGLVAAPDTFQGEDMDVLAAEVLSRKHDAGDYLGIKAHFDQILKRIEKDQDRDSGNYSKYWDSKNYLNNVKNI KADIIMVHGLNDWNVKPRNVGKLWNAVRDLPINKKIILHQGQHIYINAFRSIDFTDMMNLWLSYKLFDVQNGANEVLPNV IIQDNVEPETWNTYQDWQAADDEIREFTLQAKTLVDRASETKNEAASFRDSLDPEFFEMYKNDLKHWHTDLLNTEHATNG KNQMRNNRLIFKTAQTKEDWLIDGTPEVSVNVAVNQPFGMLSFQLVDFGDAKRLNPSPSILQPRSLSGSFDWRTDDLREF TLQNAVTPWKMISKGHINLQNRTNNYCVDEVKPHQFYDVKLELQPTFYRLLAGHQLGLVIYATDFETTIRGNQELLYSLQ LNQSHLKIKLAH
Sequences:
>Translated_812_residues MKNNQFGRIRLDRTTELEELKNIHFIDADLLADPKAQLKDFLKRSCLVSNSEATFQQKLSNLLATPDQTMAAFFESDQPL TLEIFILLELQLLQFEADTDYQIEDPLSAISKIQLPELDLKNFETSADVAHAWYNLLTTHTKNGEVYLDRLTQQGYFVSF YPTTTKPLFFNGKAQAVFDPHQLIREVVYVEAPLDTDHDGQRDLLKAEILRPAQTAHGYQAPVLYTASPYNQGTNDSYGE AITHNVDVPLTEKAVQKISKSDVTAEPFSQTLPAERKVAGMATKASETFAREQPYTLNNYFLSRGFAVVYAAGIGTRDSD GLRDTGSVEETISTTAIIEWLAGNRRAFTNKTDNLEIKASWSNHKIAMTGRSYLGTLATAAATTGVEGLETIISEAAISS WYDYYRDGGLVAAPDTFQGEDMDVLAAEVLSRKHDAGDYLGIKAHFDQILKRIEKDQDRDSGNYSKYWDSKNYLNNVKNI KADIIMVHGLNDWNVKPRNVGKLWNAVRDLPINKKIILHQGQHIYINAFRSIDFTDMMNLWLSYKLFDVQNGANEVLPNV IIQDNVEPETWNTYQDWQAADDEIREFTLQAKTLVDRASETKNEAASFRDSLDPEFFEMYKNDLKHWHTDLLNTEHATNG KNQMRNNRLIFKTAQTKEDWLIDGTPEVSVNVAVNQPFGMLSFQLVDFGDAKRLNPSPSILQPRSLSGSFDWRTDDLREF TLQNAVTPWKMISKGHINLQNRTNNYCVDEVKPHQFYDVKLELQPTFYRLLAGHQLGLVIYATDFETTIRGNQELLYSLQ LNQSHLKIKLAH >Mature_812_residues MKNNQFGRIRLDRTTELEELKNIHFIDADLLADPKAQLKDFLKRSCLVSNSEATFQQKLSNLLATPDQTMAAFFESDQPL TLEIFILLELQLLQFEADTDYQIEDPLSAISKIQLPELDLKNFETSADVAHAWYNLLTTHTKNGEVYLDRLTQQGYFVSF YPTTTKPLFFNGKAQAVFDPHQLIREVVYVEAPLDTDHDGQRDLLKAEILRPAQTAHGYQAPVLYTASPYNQGTNDSYGE AITHNVDVPLTEKAVQKISKSDVTAEPFSQTLPAERKVAGMATKASETFAREQPYTLNNYFLSRGFAVVYAAGIGTRDSD GLRDTGSVEETISTTAIIEWLAGNRRAFTNKTDNLEIKASWSNHKIAMTGRSYLGTLATAAATTGVEGLETIISEAAISS WYDYYRDGGLVAAPDTFQGEDMDVLAAEVLSRKHDAGDYLGIKAHFDQILKRIEKDQDRDSGNYSKYWDSKNYLNNVKNI KADIIMVHGLNDWNVKPRNVGKLWNAVRDLPINKKIILHQGQHIYINAFRSIDFTDMMNLWLSYKLFDVQNGANEVLPNV IIQDNVEPETWNTYQDWQAADDEIREFTLQAKTLVDRASETKNEAASFRDSLDPEFFEMYKNDLKHWHTDLLNTEHATNG KNQMRNNRLIFKTAQTKEDWLIDGTPEVSVNVAVNQPFGMLSFQLVDFGDAKRLNPSPSILQPRSLSGSFDWRTDDLREF TLQNAVTPWKMISKGHINLQNRTNNYCVDEVKPHQFYDVKLELQPTFYRLLAGHQLGLVIYATDFETTIRGNQELLYSLQ LNQSHLKIKLAH
Specific function: Removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase S15 family
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): PEPX_PEDPA (Q03H46)
Other databases:
- EMBL: CP000422 - RefSeq: YP_803918.1 - ProteinModelPortal: Q03H46 - SMR: Q03H46 - STRING: Q03H46 - MEROPS: S15.001 - GeneID: 4418451 - GenomeReviews: CP000422_GR - KEGG: ppe:PEPE_0380 - NMPDR: fig|278197.10.peg.353 - eggNOG: NOG04844 - HOGENOM: HBG515455 - OMA: NDWNVKP - ProtClustDB: PRK05371 - BioCyc: PPEN278197:PEPE_0380-MONOMER - GO: GO:0005737 - GO: GO:0006508 - HAMAP: MF_00698 - InterPro: IPR008979 - InterPro: IPR013736 - InterPro: IPR008252 - InterPro: IPR000383 - InterPro: IPR015251 - PRINTS: PR00923 - SMART: SM00939 - SMART: SM00940
Pfam domain/function: PF02129 Peptidase_S15; PF08530 PepX_C; PF09168 PepX_N; SSF49785 Gal_bind_like; SSF81761 PepX_N
EC number: =3.4.14.11
Molecular weight: Translated: 92355; Mature: 92355
Theoretical pI: Translated: 5.11; Mature: 5.11
Prosite motif: NA
Important sites: ACT_SITE 372-372 ACT_SITE 492-492 ACT_SITE 523-523
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKNNQFGRIRLDRTTELEELKNIHFIDADLLADPKAQLKDFLKRSCLVSNSEATFQQKLS CCCCCEEEEEECCCCCHHHHCCEEEEEHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHH NLLATPDQTMAAFFESDQPLTLEIFILLELQLLQFEADTDYQIEDPLSAISKIQLPELDL HHHCCCCHHHHHHHCCCCCEEEEEEEEEEEEEEEEECCCCCCCCCHHHHHHHCCCCCCCC KNFETSADVAHAWYNLLTTHTKNGEVYLDRLTQQGYFVSFYPTTTKPLFFNGKAQAVFDP CCCCCHHHHHHHHHHHHHEECCCCCEEEEEECCCCEEEEEECCCCCCEEECCCCCEEECH HQLIREVVYVEAPLDTDHDGQRDLLKAEILRPAQTAHGYQAPVLYTASPYNQGTNDSYGE HHHHHHHHEEECCCCCCCCCHHHHHHHHHHCCHHHCCCCCCCEEEEECCCCCCCCCCCCC AITHNVDVPLTEKAVQKISKSDVTAEPFSQTLPAERKVAGMATKASETFAREQPYTLNNY CEEECCCCCCHHHHHHHHHHCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHH FLSRGFAVVYAAGIGTRDSDGLRDTGSVEETISTTAIIEWLAGNRRAFTNKTDNLEIKAS HHHCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCEEEEEE WSNHKIAMTGRSYLGTLATAAATTGVEGLETIISEAAISSWYDYYRDGGLVAAPDTFQGE CCCCEEEEECHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCC DMDVLAAEVLSRKHDAGDYLGIKAHFDQILKRIEKDQDRDSGNYSKYWDSKNYLNNVKNI CHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHCCCCCCCCCHHHCCCHHHHHHHHCC KADIIMVHGLNDWNVKPRNVGKLWNAVRDLPINKKIILHQGQHIYINAFRSIDFTDMMNL EEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCEEEEEEECCCCHHHHHHH WLSYKLFDVQNGANEVLPNVIIQDNVEPETWNTYQDWQAADDEIREFTLQAKTLVDRASE HHEEEEEEECCCHHHHCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH TKNEAASFRDSLDPEFFEMYKNDLKHWHTDLLNTEHATNGKNQMRNNRLIFKTAQTKEDW HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCEEEEEECCCCCCE LIDGTPEVSVNVAVNQPFGMLSFQLVDFGDAKRLNPSPSILQPRSLSGSFDWRTDDLREF EECCCCCEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH TLQNAVTPWKMISKGHINLQNRTNNYCVDEVKPHQFYDVKLELQPTFYRLLAGHQLGLVI HHHHCCCCHHHHCCCCEEECCCCCCEECCCCCCCEEEEEEEEECHHHHHHHCCCCEEEEE YATDFETTIRGNQELLYSLQLNQSHLKIKLAH EEECCCHHHCCCCEEEEEEEECCCEEEEEECC >Mature Secondary Structure MKNNQFGRIRLDRTTELEELKNIHFIDADLLADPKAQLKDFLKRSCLVSNSEATFQQKLS CCCCCEEEEEECCCCCHHHHCCEEEEEHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHH NLLATPDQTMAAFFESDQPLTLEIFILLELQLLQFEADTDYQIEDPLSAISKIQLPELDL HHHCCCCHHHHHHHCCCCCEEEEEEEEEEEEEEEEECCCCCCCCCHHHHHHHCCCCCCCC KNFETSADVAHAWYNLLTTHTKNGEVYLDRLTQQGYFVSFYPTTTKPLFFNGKAQAVFDP CCCCCHHHHHHHHHHHHHEECCCCCEEEEEECCCCEEEEEECCCCCCEEECCCCCEEECH HQLIREVVYVEAPLDTDHDGQRDLLKAEILRPAQTAHGYQAPVLYTASPYNQGTNDSYGE HHHHHHHHEEECCCCCCCCCHHHHHHHHHHCCHHHCCCCCCCEEEEECCCCCCCCCCCCC AITHNVDVPLTEKAVQKISKSDVTAEPFSQTLPAERKVAGMATKASETFAREQPYTLNNY CEEECCCCCCHHHHHHHHHHCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHH FLSRGFAVVYAAGIGTRDSDGLRDTGSVEETISTTAIIEWLAGNRRAFTNKTDNLEIKAS HHHCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCEEEEEE WSNHKIAMTGRSYLGTLATAAATTGVEGLETIISEAAISSWYDYYRDGGLVAAPDTFQGE CCCCEEEEECHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCC DMDVLAAEVLSRKHDAGDYLGIKAHFDQILKRIEKDQDRDSGNYSKYWDSKNYLNNVKNI CHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHCCCCCCCCCHHHCCCHHHHHHHHCC KADIIMVHGLNDWNVKPRNVGKLWNAVRDLPINKKIILHQGQHIYINAFRSIDFTDMMNL EEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCEEEEEEECCCCHHHHHHH WLSYKLFDVQNGANEVLPNVIIQDNVEPETWNTYQDWQAADDEIREFTLQAKTLVDRASE HHEEEEEEECCCHHHHCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH TKNEAASFRDSLDPEFFEMYKNDLKHWHTDLLNTEHATNGKNQMRNNRLIFKTAQTKEDW HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCEEEEEECCCCCCE LIDGTPEVSVNVAVNQPFGMLSFQLVDFGDAKRLNPSPSILQPRSLSGSFDWRTDDLREF EECCCCCEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH TLQNAVTPWKMISKGHINLQNRTNNYCVDEVKPHQFYDVKLELQPTFYRLLAGHQLGLVI HHHHCCCCHHHHCCCCEEECCCCCCEECCCCCCCEEEEEEEEECHHHHHHHCCCCEEEEE YATDFETTIRGNQELLYSLQLNQSHLKIKLAH EEECCCHHHCCCCEEEEEEEECCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA