| Definition | Pediococcus pentosaceus ATCC 25745, complete genome. |
|---|---|
| Accession | NC_008525 |
| Length | 1,832,387 |
Click here to switch to the map view.
The map label for this gene is gor [H]
Identifier: 116491967
GI number: 116491967
Start: 180274
End: 181608
Strand: Reverse
Name: gor [H]
Synonym: PEPE_0153
Alternate gene names: 116491967
Gene position: 181608-180274 (Counterclockwise)
Preceding gene: 116491968
Following gene: 116491966
Centisome position: 9.91
GC content: 44.94
Gene sequence:
>1335_bases ATGACTGAAAGTTATCAATTTGATGTTTTGTACTTAGGCGCGGGGCATGGTGCCTTCGACGGGGCGGTTCCACTAGCTAA TAGTGGTAAAAAAGTCGCCATCGTCGAAGCGGACAAAATCGGGGGAACTTGTCCAAACCGTGGATGCAACGCGAAAATTA CGCTGGACAACCCGGTTCAACTTTTACGCCACCAAGAACGCCTTGATGGCATTGTAAATGGTGACTTAAAACTGGATTGG ACTGCCAATGTAGAACATGAACACGAAGTCATCGACGGCTTGCCGGACATGATTACTGGTCTACTCGACTCTGTTGACAT CGAAATTATTCACGGTCGTGGAAAATTTGTTGATGCTCACACCATCGAAGTGGATCAACAGCGCTACACCGCTGACAAAA TCGTGATTGCAACGGGGCTACGTCCCCACCATCTAGATGTTATGGGATCAGAACTTACGCATGACAGTACTGATTTTATG AACCTCAAGCATCTTCCTGAAAATATCGTAATTATTGGCGCGGGCTATATTGGCATGGAATTTGCCACGATTGCCAATGC TGCCGGCGCGAACGTCACTGTACTTTTACGCCATAATCGGGCGTTGCGCAAGTTTAATCAAGATTACGTAAAACAAGTCA TTGCCGACCTCGAAAAACGAGGGGTGAAGTTCATTTACAACGCTCAGGTGGATCGTTTTGAGGAAGACGGTTCTCATTTT ACCGTGTCTTATAACGATCACGAAACCCTCACCACCGACTGGATTTTGGATGCTACCGGACGAATTCCTAATATCGAAAA CATCGGATTAGACGAAGTAGGCGTTAGTTACAATGCTAACGGGATCGAAGTTAACGATCATCTCCAAACTAACATTGATA ACATCTATGCTTCTGGTGATGTGCTTGATAAAGAACAGCCTAAGCTCACCCCGACTGCGATCTTTGAATCTAGTTATTTA ACCCAACTTTTCACAGGAAAGACTACTGACGCAATCAATTATCCGGCCATCCCAACCATTGTCTTTACCTCGCCACAAAT CGCACAGGTTGGTATGAGCGTCGAAGAAGCTCAGCAAAATCCTGATTACACCATTAAAACTAATCATCTTCCTGACGGAT GGTTCCGCCAAGTTGATAAGGAAACAATTGGTAATAACACCTTGATTTACGATCAAGACCATCATCTTGTAGGAGCAGCT GAAGTTAGTGAACATGCTGCCGATGCAATTAACGTTTTATTACCAGCAATTGAGTTCCAATATACAGCTGAACAACTAGG ACGCATCGTACCCCTCTTCCCTACTTTGGGAGCGGACGTCTGGTCACAGATTTAA
Upstream 100 bases:
>100_bases TCCCAGTTGCAATCGCTTGCAACTCGCCCCTATCCTCTGCTATGCTCGTGCCAACAATGGTAATTGTTTATTCACCTAAA TTTAGGATGGAGGTAATTAA
Downstream 100 bases:
>100_bases AAAAAACGCTGAGCCTTTCTGAAAGAGGTTCAGTGTTTTTATTTTCTACAATTAAAAAAAGTGAAAAATATTTTTACGTC TACTGCCGAAGATGATTAAC
Product: pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, related enzyme
Products: NA
Alternate protein names: GR; GRase [H]
Number of amino acids: Translated: 444; Mature: 443
Protein sequence:
>444_residues MTESYQFDVLYLGAGHGAFDGAVPLANSGKKVAIVEADKIGGTCPNRGCNAKITLDNPVQLLRHQERLDGIVNGDLKLDW TANVEHEHEVIDGLPDMITGLLDSVDIEIIHGRGKFVDAHTIEVDQQRYTADKIVIATGLRPHHLDVMGSELTHDSTDFM NLKHLPENIVIIGAGYIGMEFATIANAAGANVTVLLRHNRALRKFNQDYVKQVIADLEKRGVKFIYNAQVDRFEEDGSHF TVSYNDHETLTTDWILDATGRIPNIENIGLDEVGVSYNANGIEVNDHLQTNIDNIYASGDVLDKEQPKLTPTAIFESSYL TQLFTGKTTDAINYPAIPTIVFTSPQIAQVGMSVEEAQQNPDYTIKTNHLPDGWFRQVDKETIGNNTLIYDQDHHLVGAA EVSEHAADAINVLLPAIEFQYTAEQLGRIVPLFPTLGADVWSQI
Sequences:
>Translated_444_residues MTESYQFDVLYLGAGHGAFDGAVPLANSGKKVAIVEADKIGGTCPNRGCNAKITLDNPVQLLRHQERLDGIVNGDLKLDW TANVEHEHEVIDGLPDMITGLLDSVDIEIIHGRGKFVDAHTIEVDQQRYTADKIVIATGLRPHHLDVMGSELTHDSTDFM NLKHLPENIVIIGAGYIGMEFATIANAAGANVTVLLRHNRALRKFNQDYVKQVIADLEKRGVKFIYNAQVDRFEEDGSHF TVSYNDHETLTTDWILDATGRIPNIENIGLDEVGVSYNANGIEVNDHLQTNIDNIYASGDVLDKEQPKLTPTAIFESSYL TQLFTGKTTDAINYPAIPTIVFTSPQIAQVGMSVEEAQQNPDYTIKTNHLPDGWFRQVDKETIGNNTLIYDQDHHLVGAA EVSEHAADAINVLLPAIEFQYTAEQLGRIVPLFPTLGADVWSQI >Mature_443_residues TESYQFDVLYLGAGHGAFDGAVPLANSGKKVAIVEADKIGGTCPNRGCNAKITLDNPVQLLRHQERLDGIVNGDLKLDWT ANVEHEHEVIDGLPDMITGLLDSVDIEIIHGRGKFVDAHTIEVDQQRYTADKIVIATGLRPHHLDVMGSELTHDSTDFMN LKHLPENIVIIGAGYIGMEFATIANAAGANVTVLLRHNRALRKFNQDYVKQVIADLEKRGVKFIYNAQVDRFEEDGSHFT VSYNDHETLTTDWILDATGRIPNIENIGLDEVGVSYNANGIEVNDHLQTNIDNIYASGDVLDKEQPKLTPTAIFESSYLT QLFTGKTTDAINYPAIPTIVFTSPQIAQVGMSVEEAQQNPDYTIKTNHLPDGWFRQVDKETIGNNTLIYDQDHHLVGAAE VSEHAADAINVLLPAIEFQYTAEQLGRIVPLFPTLGADVWSQI
Specific function: Maintains high levels of reduced glutathione in the cytosol [H]
COG id: COG1249
COG function: function code C; Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family [H]
Homologues:
Organism=Homo sapiens, GI50301238, Length=370, Percent_Identity=33.5135135135135, Blast_Score=167, Evalue=1e-41, Organism=Homo sapiens, GI291045266, Length=347, Percent_Identity=32.5648414985591, Blast_Score=142, Evalue=5e-34, Organism=Homo sapiens, GI91199540, Length=462, Percent_Identity=27.2727272727273, Blast_Score=136, Evalue=4e-32, Organism=Homo sapiens, GI33519430, Length=338, Percent_Identity=30.7692307692308, Blast_Score=133, Evalue=4e-31, Organism=Homo sapiens, GI33519428, Length=338, Percent_Identity=30.7692307692308, Blast_Score=133, Evalue=4e-31, Organism=Homo sapiens, GI33519426, Length=338, Percent_Identity=30.7692307692308, Blast_Score=133, Evalue=4e-31, Organism=Homo sapiens, GI148277065, Length=338, Percent_Identity=30.7692307692308, Blast_Score=133, Evalue=4e-31, Organism=Homo sapiens, GI148277071, Length=338, Percent_Identity=30.7692307692308, Blast_Score=132, Evalue=4e-31, Organism=Homo sapiens, GI22035672, Length=367, Percent_Identity=28.8828337874659, Blast_Score=130, Evalue=2e-30, Organism=Homo sapiens, GI291045268, Length=322, Percent_Identity=32.2981366459627, Blast_Score=125, Evalue=6e-29, Organism=Escherichia coli, GI1789915, Length=344, Percent_Identity=34.0116279069767, Blast_Score=175, Evalue=4e-45, Organism=Escherichia coli, GI1786307, Length=455, Percent_Identity=28.5714285714286, Blast_Score=163, Evalue=2e-41, Organism=Escherichia coli, GI87082354, Length=429, Percent_Identity=26.5734265734266, Blast_Score=132, Evalue=4e-32, Organism=Escherichia coli, GI87081717, Length=369, Percent_Identity=28.7262872628726, Blast_Score=115, Evalue=8e-27, Organism=Caenorhabditis elegans, GI17557007, Length=384, Percent_Identity=28.3854166666667, Blast_Score=148, Evalue=5e-36, Organism=Caenorhabditis elegans, GI71983419, Length=342, Percent_Identity=30.1169590643275, Blast_Score=139, Evalue=2e-33, Organism=Caenorhabditis elegans, GI71983429, Length=342, Percent_Identity=30.1169590643275, Blast_Score=139, Evalue=2e-33, Organism=Caenorhabditis elegans, GI32565766, Length=460, Percent_Identity=26.9565217391304, Blast_Score=133, Evalue=2e-31, Organism=Caenorhabditis elegans, GI71982272, Length=371, Percent_Identity=28.3018867924528, Blast_Score=109, Evalue=3e-24, Organism=Caenorhabditis elegans, GI17559934, Length=185, Percent_Identity=29.7297297297297, Blast_Score=68, Evalue=1e-11, Organism=Saccharomyces cerevisiae, GI6325166, Length=380, Percent_Identity=26.8421052631579, Blast_Score=121, Evalue=3e-28, Organism=Saccharomyces cerevisiae, GI6321091, Length=465, Percent_Identity=25.3763440860215, Blast_Score=100, Evalue=4e-22, Organism=Saccharomyces cerevisiae, GI6325240, Length=378, Percent_Identity=24.3386243386243, Blast_Score=73, Evalue=1e-13, Organism=Drosophila melanogaster, GI24640549, Length=386, Percent_Identity=30.8290155440415, Blast_Score=152, Evalue=5e-37, Organism=Drosophila melanogaster, GI24640553, Length=386, Percent_Identity=30.8290155440415, Blast_Score=151, Evalue=7e-37, Organism=Drosophila melanogaster, GI24640551, Length=386, Percent_Identity=30.8290155440415, Blast_Score=151, Evalue=8e-37, Organism=Drosophila melanogaster, GI21358499, Length=456, Percent_Identity=27.4122807017544, Blast_Score=136, Evalue=2e-32, Organism=Drosophila melanogaster, GI17737741, Length=389, Percent_Identity=28.5347043701799, Blast_Score=131, Evalue=8e-31,
Paralogues:
None
Copy number: 650 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016156 - InterPro: IPR013027 - InterPro: IPR006324 - InterPro: IPR004099 - InterPro: IPR012999 - InterPro: IPR001327 [H]
Pfam domain/function: PF00070 Pyr_redox; PF07992 Pyr_redox_2; PF02852 Pyr_redox_dim [H]
EC number: =1.8.1.7 [H]
Molecular weight: Translated: 49019; Mature: 48888
Theoretical pI: Translated: 4.50; Mature: 4.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTESYQFDVLYLGAGHGAFDGAVPLANSGKKVAIVEADKIGGTCPNRGCNAKITLDNPVQ CCCCEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEECCHHH LLRHQERLDGIVNGDLKLDWTANVEHEHEVIDGLPDMITGLLDSVDIEIIHGRGKFVDAH HHHHHHHHCCEECCCEEEEEEECCCHHHHHHCCCHHHHHHHHCCCCEEEEECCCCEEEEE TIEVDQQRYTADKIVIATGLRPHHLDVMGSELTHDSTDFMNLKHLPENIVIIGAGYIGME EEEECCHHCCCCEEEEEECCCCCEEEECCCCCCCCCCCHHHHHCCCCCEEEEECCHHHHH FATIANAAGANVTVLLRHNRALRKFNQDYVKQVIADLEKRGVKFIYNAQVDRFEEDGSHF HHHHHCCCCCCEEEEEECCHHHHHHCHHHHHHHHHHHHHCCEEEEEECCCHHHCCCCCEE TVSYNDHETLTTDWILDATGRIPNIENIGLDEVGVSYNANGIEVNDHLQTNIDNIYASGD EEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCCEECCCCEEECCCHHCCCCCEEECCC VLDKEQPKLTPTAIFESSYLTQLFTGKTTDAINYPAIPTIVFTSPQIAQVGMSVEEAQQN CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCHHHHHCCCHHHHHCC PDYTIKTNHLPDGWFRQVDKETIGNNTLIYDQDHHLVGAAEVSEHAADAINVLLPAIEFQ CCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCEEEHHHHHHHHHHHHHHHHHHHHEE YTAEQLGRIVPLFPTLGADVWSQI ECHHHHCCEEEECCCCCHHHHHCC >Mature Secondary Structure TESYQFDVLYLGAGHGAFDGAVPLANSGKKVAIVEADKIGGTCPNRGCNAKITLDNPVQ CCCEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEECCHHH LLRHQERLDGIVNGDLKLDWTANVEHEHEVIDGLPDMITGLLDSVDIEIIHGRGKFVDAH HHHHHHHHCCEECCCEEEEEEECCCHHHHHHCCCHHHHHHHHCCCCEEEEECCCCEEEEE TIEVDQQRYTADKIVIATGLRPHHLDVMGSELTHDSTDFMNLKHLPENIVIIGAGYIGME EEEECCHHCCCCEEEEEECCCCCEEEECCCCCCCCCCCHHHHHCCCCCEEEEECCHHHHH FATIANAAGANVTVLLRHNRALRKFNQDYVKQVIADLEKRGVKFIYNAQVDRFEEDGSHF HHHHHCCCCCCEEEEEECCHHHHHHCHHHHHHHHHHHHHCCEEEEEECCCHHHCCCCCEE TVSYNDHETLTTDWILDATGRIPNIENIGLDEVGVSYNANGIEVNDHLQTNIDNIYASGD EEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCCEECCCCEEECCCHHCCCCCEEECCC VLDKEQPKLTPTAIFESSYLTQLFTGKTTDAINYPAIPTIVFTSPQIAQVGMSVEEAQQN CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCHHHHHCCCHHHHHCC PDYTIKTNHLPDGWFRQVDKETIGNNTLIYDQDHHLVGAAEVSEHAADAINVLLPAIEFQ CCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCEEEHHHHHHHHHHHHHHHHHHHHEE YTAEQLGRIVPLFPTLGADVWSQI ECHHHHCCEEEECCCCCHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7559423; 11759840 [H]