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The map label for this gene is ybhD [C]

Identifier: 116491892

GI number: 116491892

Start: 82325

End: 83206

Strand: Reverse

Name: ybhD [C]

Synonym: PEPE_0074

Alternate gene names: 116491892

Gene position: 83206-82325 (Counterclockwise)

Preceding gene: 116491899

Following gene: 116491878

Centisome position: 4.54

GC content: 38.1

Gene sequence:

>882_bases
TTGGCAATGAACCTTGATTTACTAAAAGAGCTAGTAGCATTTCAAAGATACGGTACACTAAGCTCGACTGCTGAGCATTT
AATGATTACTCAACCCACCGTTACTCGGGGAATGCGCAGATTAGAAGATGAATTAGGTGTATCACTTTTTGATCGCCGAG
TTAGTAACCACATCAAATTAAATGAAACTGGTGTTTACGCGGCTACAGAAGCAGCCAAATTATTGAAAGCAGAGCGGGAT
TTTACTGAACGAGTATTAAACTACCATCACTTAAATCATGAAATTGTAATTGGTTCAGTTGCTCCTGGTCCAGTTATCCT
ACTAGAAAACTCCGAAATTTCATCCCCTGCTAAAGTTAAAATTAATTTTCAAAATGTTTTTCCTGAAAAAGTTGCTGATA
ATCTTAAAAATCTTAAAGAGAAGCTAATTTTTACCAACCAAGAAATTATGACCGATGAAATCGAATCAGTTTATTTGGGT
GTGGAATACCTTGGAGTAGAAATTGGTAAATCTAATCCACTATCTAAAAAAACATCCGTAAACTTCGACGATTTAGCCGG
AATGAGTTTCCTCGTGGTCCAAGATACTGGCCCTTGGCAAGCAATCGTAGAAAATAATATCCCTGATGCTGCTTTCTTAT
ACCAAGCTGATCTCGATGCCATGAGTGAAATTAGTCGGAATTCTAAATTCCCCTATTTTTTCTCCAACTTATCACTAGTT
AGTTCGGCCACCATTGAGCGCTCTGACGATGGTGGACGCGTAGCCGTCCCCATCGACGATCCTCGTAATCGTCTTGAATT
CTACGGTTCATATTTAAAAAGTAACCGTAAACTCGTCCAACCACTTTTAAAAGAGATTAATAAAATTTGGCCGCAAAATT
AA

Upstream 100 bases:

>100_bases
CTTTAAGTACTTTCTAGTATAGGGGGTTAATTACCATATAAAAATTACCAATCAAGTATGTTACTATGCATTTATGGAAT
AGTGAAAGGAAGTAATCGAA

Downstream 100 bases:

>100_bases
TGGCGGCCAAATTTTCGCGATGATTAAACATCAATATTCATTATTTTTAGGACCGTTCGCGGTCTTTTTTATTTACCCCA
ATGTGATTCTTAACCTTGTC

Product: transcriptional regulator

Products: NA

Alternate protein names: Transcription Regulator; Transcriptional Regulator LysR Family; LysR Family Transcriptional Regulator; Transcription Regulator LysR Family

Number of amino acids: Translated: 293; Mature: 292

Protein sequence:

>293_residues
MAMNLDLLKELVAFQRYGTLSSTAEHLMITQPTVTRGMRRLEDELGVSLFDRRVSNHIKLNETGVYAATEAAKLLKAERD
FTERVLNYHHLNHEIVIGSVAPGPVILLENSEISSPAKVKINFQNVFPEKVADNLKNLKEKLIFTNQEIMTDEIESVYLG
VEYLGVEIGKSNPLSKKTSVNFDDLAGMSFLVVQDTGPWQAIVENNIPDAAFLYQADLDAMSEISRNSKFPYFFSNLSLV
SSATIERSDDGGRVAVPIDDPRNRLEFYGSYLKSNRKLVQPLLKEINKIWPQN

Sequences:

>Translated_293_residues
MAMNLDLLKELVAFQRYGTLSSTAEHLMITQPTVTRGMRRLEDELGVSLFDRRVSNHIKLNETGVYAATEAAKLLKAERD
FTERVLNYHHLNHEIVIGSVAPGPVILLENSEISSPAKVKINFQNVFPEKVADNLKNLKEKLIFTNQEIMTDEIESVYLG
VEYLGVEIGKSNPLSKKTSVNFDDLAGMSFLVVQDTGPWQAIVENNIPDAAFLYQADLDAMSEISRNSKFPYFFSNLSLV
SSATIERSDDGGRVAVPIDDPRNRLEFYGSYLKSNRKLVQPLLKEINKIWPQN
>Mature_292_residues
AMNLDLLKELVAFQRYGTLSSTAEHLMITQPTVTRGMRRLEDELGVSLFDRRVSNHIKLNETGVYAATEAAKLLKAERDF
TERVLNYHHLNHEIVIGSVAPGPVILLENSEISSPAKVKINFQNVFPEKVADNLKNLKEKLIFTNQEIMTDEIESVYLGV
EYLGVEIGKSNPLSKKTSVNFDDLAGMSFLVVQDTGPWQAIVENNIPDAAFLYQADLDAMSEISRNSKFPYFFSNLSLVS
SATIERSDDGGRVAVPIDDPRNRLEFYGSYLKSNRKLVQPLLKEINKIWPQN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33011; Mature: 32880

Theoretical pI: Translated: 5.24; Mature: 5.24

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAMNLDLLKELVAFQRYGTLSSTAEHLMITQPTVTRGMRRLEDELGVSLFDRRVSNHIKL
CCCCHHHHHHHHHHHHCCCHHHCHHHEEEECCHHHHHHHHHHHHHCHHHHHHHHHCCEEE
NETGVYAATEAAKLLKAERDFTERVLNYHHLNHEIVIGSVAPGPVILLENSEISSPAKVK
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEECCCCCCCEEEE
INFQNVFPEKVADNLKNLKEKLIFTNQEIMTDEIESVYLGVEYLGVEIGKSNPLSKKTSV
EEEHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCC
NFDDLAGMSFLVVQDTGPWQAIVENNIPDAAFLYQADLDAMSEISRNSKFPYFFSNLSLV
CHHHHCCCEEEEEECCCCHHHHHCCCCCCHHEEEHHHHHHHHHHHHCCCCCEEECCHHHH
SSATIERSDDGGRVAVPIDDPRNRLEFYGSYLKSNRKLVQPLLKEINKIWPQN
HHHHEEECCCCCEEEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
AMNLDLLKELVAFQRYGTLSSTAEHLMITQPTVTRGMRRLEDELGVSLFDRRVSNHIKL
CCCHHHHHHHHHHHHCCCHHHCHHHEEEECCHHHHHHHHHHHHHCHHHHHHHHHCCEEE
NETGVYAATEAAKLLKAERDFTERVLNYHHLNHEIVIGSVAPGPVILLENSEISSPAKVK
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEECCCCCCCEEEE
INFQNVFPEKVADNLKNLKEKLIFTNQEIMTDEIESVYLGVEYLGVEIGKSNPLSKKTSV
EEEHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCC
NFDDLAGMSFLVVQDTGPWQAIVENNIPDAAFLYQADLDAMSEISRNSKFPYFFSNLSLV
CHHHHCCCEEEEEECCCCHHHHHCCCCCCHHEEEHHHHHHHHHHHHCCCCCEEECCHHHH
SSATIERSDDGGRVAVPIDDPRNRLEFYGSYLKSNRKLVQPLLKEINKIWPQN
HHHHEEECCCCCEEEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA