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The map label for this gene is rnpA [H]

Identifier: 116514956

GI number: 116514956

Start: 7377

End: 7721

Strand: Direct

Name: rnpA [H]

Synonym: BCc_006

Alternate gene names: 116514956

Gene position: 7377-7721 (Clockwise)

Preceding gene: 116514955

Following gene: 116514957

Centisome position: 1.77

GC content: 14.49

Gene sequence:

>345_bases
ATGTCACAATTTTCTTTTCATAAAAAATTACGTTTTATATCAAATACTAAATTTTATTTTACATGTAATAAAAAAAATAA
AATTTATACAAAAAATTTTGTTTTATTAGCTAATTTTAATTTTTTAAATTTTCCACGATTAAGTATTTCTATTTCTAAAA
AAAATATCAAAAAATCACATGATCGTAATAGAATTAAACGTATTATTAGAGAAAGTTTTCGTTTGTTTCAAAATAATTTA
AAATATATGGATTTTTTTTTTGATTGTAAAAAAAATGTACATTTATATGATAATAAAATTATTTTTTATTTTTTACGAAA
ATTATGGTTTATGAAAAAAAATTAA

Upstream 100 bases:

>100_bases
GCTCGCATGTCATCTAAAAGCGGTCGAAATATAATATCACATCGACGTTCAAAATTACGTTCAGTTTTATGTGTTTAGTT
ATTAAATAAATATTTTAAAA

Downstream 100 bases:

>100_bases
GTTAATTTAAATAAATTATATCATGTATTAATATATAATAGATATATTTTTTGTTTTATTTTTTAATTATAGTTGATAAA
ATTTTTATAATATATATATA

Product: hypothetical protein

Products: NA

Alternate protein names: RNase P protein; RNaseP protein; Protein C5 [H]

Number of amino acids: Translated: 114; Mature: 113

Protein sequence:

>114_residues
MSQFSFHKKLRFISNTKFYFTCNKKNKIYTKNFVLLANFNFLNFPRLSISISKKNIKKSHDRNRIKRIIRESFRLFQNNL
KYMDFFFDCKKNVHLYDNKIIFYFLRKLWFMKKN

Sequences:

>Translated_114_residues
MSQFSFHKKLRFISNTKFYFTCNKKNKIYTKNFVLLANFNFLNFPRLSISISKKNIKKSHDRNRIKRIIRESFRLFQNNL
KYMDFFFDCKKNVHLYDNKIIFYFLRKLWFMKKN
>Mature_113_residues
SQFSFHKKLRFISNTKFYFTCNKKNKIYTKNFVLLANFNFLNFPRLSISISKKNIKKSHDRNRIKRIIRESFRLFQNNLK
YMDFFFDCKKNVHLYDNKIIFYFLRKLWFMKKN

Specific function: RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-lead

COG id: COG0594

COG function: function code J; RNase P protein component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rnpA family [H]

Homologues:

Organism=Escherichia coli, GI1790139, Length=109, Percent_Identity=38.5321100917431, Blast_Score=101, Evalue=1e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020568
- InterPro:   IPR014721
- InterPro:   IPR000100
- InterPro:   IPR020539
- ProDom:   PD003629 [H]

Pfam domain/function: PF00825 Ribonuclease_P [H]

EC number: =3.1.26.5 [H]

Molecular weight: Translated: 14291; Mature: 14160

Theoretical pI: Translated: 11.24; Mature: 11.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQFSFHKKLRFISNTKFYFTCNKKNKIYTKNFVLLANFNFLNFPRLSISISKKNIKKSH
CCCCHHHHHHHHHCCCEEEEEECCCCEEEECCEEEEEECCCCCCCEEEEEEEHHHHHHHH
DRNRIKRIIRESFRLFQNNLKYMDFFFDCKKNVHLYDNKIIFYFLRKLWFMKKN
HHHHHHHHHHHHHHHHHCCCHHHHHEEECCCCEEEECCCHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SQFSFHKKLRFISNTKFYFTCNKKNKIYTKNFVLLANFNFLNFPRLSISISKKNIKKSH
CCCHHHHHHHHHCCCEEEEEECCCCEEEECCEEEEEECCCCCCCEEEEEEEHHHHHHHH
DRNRIKRIIRESFRLFQNNLKYMDFFFDCKKNVHLYDNKIIFYFLRKLWFMKKN
HHHHHHHHHHHHHHHHHCCCHHHHHEEECCCCEEEECCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA