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The map label for this gene is 116332627

Identifier: 116332627

GI number: 116332627

Start: 235887

End: 236408

Strand: Reverse

Name: 116332627

Synonym: LBJ_4205

Alternate gene names: NA

Gene position: 236408-235887 (Counterclockwise)

Preceding gene: 116332629

Following gene: 116332626

Centisome position: 78.87

GC content: 38.7

Gene sequence:

>522_bases
ATGACCTCCCGGAAAGATTTTATGGATGCTCTTTATCGAGAGTACAGTGGAAGGATCTTTGATTTCCTCTATAAATATAG
TTCCGGAAATCCTGAGGTCGCGATGGATCTGATGCAGGATACGTTCCTGAATTTTTTTAGGAAATATTCGGATTCGAATG
TAGATCGAGAACAAGCGATTCGTTTGCTTTATACGATTGCTCGAAACAGATCCATCAATTACTCTCAGCAATTTTCCACG
GTAAAAGAGAACGGAAATTCCGAGATGGAGGACTTTCAGGAACAAAAACTTTCTTTTGTCAGAAAGGCCGAACTTAAAGA
TTTGGAAGAACGACTTTTGATTTGTTTGGATGAACTCGAAGAGAACGAAAAATATGCTTTGATTCTTCGGTTTATGGAAG
ATTACAGTCTAGCGACTATTGCAGAGATTATGAATATATCGGTTTCTACCGTTTCTCGTTTAATCGTCAAAGCGACCGCA
AAAGTGACCGAAATTGCAGAGAAAAAGAATTTGAAACCCTGA

Upstream 100 bases:

>100_bases
CTGAAAAAAAAATGAAGTCGTTTTGTTAACTCATAATAGAAGATAGAAGCGACCAAGGAATTTACTTGAAATTGGGTTTC
CTATTTTCAACTTAGTTCCA

Downstream 100 bases:

>100_bases
TTAAGAGTATAGATAAAAATGGAAGAATCGGGAATGAAAAGGGAAGAAAAGATTCAAGAAATTTTATTTCAAGGAAAACA
GAACGATCTAAGTCCTTCTG

Product: RNA polymerase sigma subunit

Products: NA

Alternate protein names: RNA Polymerase ECF-Type Sigma Factor; RNA Polymerase Sigma Factor Sigma-70 Family

Number of amino acids: Translated: 173; Mature: 172

Protein sequence:

>173_residues
MTSRKDFMDALYREYSGRIFDFLYKYSSGNPEVAMDLMQDTFLNFFRKYSDSNVDREQAIRLLYTIARNRSINYSQQFST
VKENGNSEMEDFQEQKLSFVRKAELKDLEERLLICLDELEENEKYALILRFMEDYSLATIAEIMNISVSTVSRLIVKATA
KVTEIAEKKNLKP

Sequences:

>Translated_173_residues
MTSRKDFMDALYREYSGRIFDFLYKYSSGNPEVAMDLMQDTFLNFFRKYSDSNVDREQAIRLLYTIARNRSINYSQQFST
VKENGNSEMEDFQEQKLSFVRKAELKDLEERLLICLDELEENEKYALILRFMEDYSLATIAEIMNISVSTVSRLIVKATA
KVTEIAEKKNLKP
>Mature_172_residues
TSRKDFMDALYREYSGRIFDFLYKYSSGNPEVAMDLMQDTFLNFFRKYSDSNVDREQAIRLLYTIARNRSINYSQQFSTV
KENGNSEMEDFQEQKLSFVRKAELKDLEERLLICLDELEENEKYALILRFMEDYSLATIAEIMNISVSTVSRLIVKATAK
VTEIAEKKNLKP

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20357; Mature: 20226

Theoretical pI: Translated: 4.83; Mature: 4.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSRKDFMDALYREYSGRIFDFLYKYSSGNPEVAMDLMQDTFLNFFRKYSDSNVDREQAI
CCCHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
RLLYTIARNRSINYSQQFSTVKENGNSEMEDFQEQKLSFVRKAELKDLEERLLICLDELE
HHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
ENEKYALILRFMEDYSLATIAEIMNISVSTVSRLIVKATAKVTEIAEKKNLKP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TSRKDFMDALYREYSGRIFDFLYKYSSGNPEVAMDLMQDTFLNFFRKYSDSNVDREQAI
CCHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
RLLYTIARNRSINYSQQFSTVKENGNSEMEDFQEQKLSFVRKAELKDLEERLLICLDELE
HHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
ENEKYALILRFMEDYSLATIAEIMNISVSTVSRLIVKATAKVTEIAEKKNLKP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA