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The map label for this gene is 116332623

Identifier: 116332623

GI number: 116332623

Start: 231005

End: 232306

Strand: Direct

Name: 116332623

Synonym: LBJ_4200

Alternate gene names: NA

Gene position: 231005-232306 (Clockwise)

Preceding gene: 116332622

Following gene: 116332628

Centisome position: 77.06

GC content: 34.72

Gene sequence:

>1302_bases
ATGATTAAGGTATTTCGAGAAAGATACAGATACGCCACTAAGAAAGAAAAGATAAGCATACTCAACGAGTTCGTGAGCCT
GTCGGGCTTTAACAGAAATTATGCTTCTCAAGTTCTTAGAAAAAAAGAAGTTCTAAAAAAACTTTCGACTAAACCCAAAA
CACAGAATAAAAGAACAGTTTACTATGATGCATCTGTTCGAAAAGTTTTAGAAGATCTCTGGAAACTTTTGGATCACATT
TGTAGTAAAAGATTAGTCCACGCAATTCCAGAAACAATTAAGAATCTAGAGAGGTTTCAGACCTACAAAATTTCTAAAGA
AATAAAACAAAAACTGTTAAAAATCAGTGCTTCCACAATTGAAAGGCTTTTAGTTCCAATTCGAAAAAAGCTTGGAATCA
AAGGAACCTCGATGACGAAACAAAATAAATATCTTATCAATCGAATTCCGATTAAAACTTTTGGAGAATGGAAAGACTCT
CTTCCTGGATTTACACAGATTGATTTAATCGCTCATAACGGCGGGAATGTTTTCGGAGGTTTTTTCTCCACCCTCTGCGC
CACAGATGTTTGTACAGGCTGGACGATTTGTATCCTTGTACGCGATAAAACGATGCTACAGATGCTCAAAGCCCTTATAC
GGCTAAAAAACGTATTTCCTTATCCTCTCTTAGGGATTCACTCTGACAACGGTTCTGAATTCATTAATGAATCAATCATT
CGATTTTCCGAAAAGTATCATCTAATCTTTACACGTGGCCGTCCTTACAAAAAGAACGATAACCCTCACGTAGAACAAAA
AAATTTTTCAGTTGTTCGAAGAAATACTGGTTATCTCAGATTCGATAAATCAGAACACTTCGAAATTTTAGTAAAACTTT
ATTCTTTATTAAATCTTTATAATAATTACTTCTTGTCGGTTATGATGTTAAAAGAAAAGCATCGCATTGGTTCAAAATCA
ATGCGAAAATACGATATTCCAAAAACACCGCTCCAGAGAGTTTTAAAGAGAAGTGAAATTCCAAGTGTAAATAAATTAGA
AATAAAATCCATTTACAAGAATTTCGACCTTTCCTCGATTAAAAATGAAATAAACCAACTACAAGACGATCTAATCAAAA
TTGCAGCGCCAATTCGATCACCTAATGTGAAAGTAAGAAAGCGCAGAAAAAAGGCAATCTATCATACAACTCCAAAATGG
AGACAAGAGTTTAGCCCTACTTCCTCGAATCCATTTTTACAACGTCAAAAAATGCAAGAATTAAGGAGGGCAGCCGAAAC
GGTTTGGAACAGGCAAAAATAG

Upstream 100 bases:

>100_bases
TTCCTCAACTAAAAACCTACACGAAACCTAATCAAAAATCAGCACTCTTTTAAGTGAGAGGCTGTAAACATGAAACTATC
CTTTAGAGGAACGTAAGGTT

Downstream 100 bases:

>100_bases
TATATTCAATCTCAAGAATTTAGGCTATATTTGGAGTAGATTTTTAGATAACGAAACAACTCATGTTTCATACTCGTTTT
TCATGAGGAAAGTCGAGGTG

Product: transposase ISLbp8

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 433; Mature: 433

Protein sequence:

>433_residues
MIKVFRERYRYATKKEKISILNEFVSLSGFNRNYASQVLRKKEVLKKLSTKPKTQNKRTVYYDASVRKVLEDLWKLLDHI
CSKRLVHAIPETIKNLERFQTYKISKEIKQKLLKISASTIERLLVPIRKKLGIKGTSMTKQNKYLINRIPIKTFGEWKDS
LPGFTQIDLIAHNGGNVFGGFFSTLCATDVCTGWTICILVRDKTMLQMLKALIRLKNVFPYPLLGIHSDNGSEFINESII
RFSEKYHLIFTRGRPYKKNDNPHVEQKNFSVVRRNTGYLRFDKSEHFEILVKLYSLLNLYNNYFLSVMMLKEKHRIGSKS
MRKYDIPKTPLQRVLKRSEIPSVNKLEIKSIYKNFDLSSIKNEINQLQDDLIKIAAPIRSPNVKVRKRRKKAIYHTTPKW
RQEFSPTSSNPFLQRQKMQELRRAAETVWNRQK

Sequences:

>Translated_433_residues
MIKVFRERYRYATKKEKISILNEFVSLSGFNRNYASQVLRKKEVLKKLSTKPKTQNKRTVYYDASVRKVLEDLWKLLDHI
CSKRLVHAIPETIKNLERFQTYKISKEIKQKLLKISASTIERLLVPIRKKLGIKGTSMTKQNKYLINRIPIKTFGEWKDS
LPGFTQIDLIAHNGGNVFGGFFSTLCATDVCTGWTICILVRDKTMLQMLKALIRLKNVFPYPLLGIHSDNGSEFINESII
RFSEKYHLIFTRGRPYKKNDNPHVEQKNFSVVRRNTGYLRFDKSEHFEILVKLYSLLNLYNNYFLSVMMLKEKHRIGSKS
MRKYDIPKTPLQRVLKRSEIPSVNKLEIKSIYKNFDLSSIKNEINQLQDDLIKIAAPIRSPNVKVRKRRKKAIYHTTPKW
RQEFSPTSSNPFLQRQKMQELRRAAETVWNRQK
>Mature_433_residues
MIKVFRERYRYATKKEKISILNEFVSLSGFNRNYASQVLRKKEVLKKLSTKPKTQNKRTVYYDASVRKVLEDLWKLLDHI
CSKRLVHAIPETIKNLERFQTYKISKEIKQKLLKISASTIERLLVPIRKKLGIKGTSMTKQNKYLINRIPIKTFGEWKDS
LPGFTQIDLIAHNGGNVFGGFFSTLCATDVCTGWTICILVRDKTMLQMLKALIRLKNVFPYPLLGIHSDNGSEFINESII
RFSEKYHLIFTRGRPYKKNDNPHVEQKNFSVVRRNTGYLRFDKSEHFEILVKLYSLLNLYNNYFLSVMMLKEKHRIGSKS
MRKYDIPKTPLQRVLKRSEIPSVNKLEIKSIYKNFDLSSIKNEINQLQDDLIKIAAPIRSPNVKVRKRRKKAIYHTTPKW
RQEFSPTSSNPFLQRQKMQELRRAAETVWNRQK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 51026; Mature: 51026

Theoretical pI: Translated: 10.89; Mature: 10.89

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKVFRERYRYATKKEKISILNEFVSLSGFNRNYASQVLRKKEVLKKLSTKPKTQNKRTV
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEE
YYDASVRKVLEDLWKLLDHICSKRLVHAIPETIKNLERFQTYKISKEIKQKLLKISASTI
EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ERLLVPIRKKLGIKGTSMTKQNKYLINRIPIKTFGEWKDSLPGFTQIDLIAHNGGNVFGG
HHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCHHHHHHHCCCCCEEEEEEEECCCCCHHH
FFSTLCATDVCTGWTICILVRDKTMLQMLKALIRLKNVFPYPLLGIHSDNGSEFINESII
HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHH
RFSEKYHLIFTRGRPYKKNDNPHVEQKNFSVVRRNTGYLRFDKSEHFEILVKLYSLLNLY
HHCCCEEEEEECCCCCCCCCCCCCCCCCCHHEECCCCEEEECCCHHHHHHHHHHHHHHHH
NNYFLSVMMLKEKHRIGSKSMRKYDIPKTPLQRVLKRSEIPSVNKLEIKSIYKNFDLSSI
HHHHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHH
KNEINQLQDDLIKIAAPIRSPNVKVRKRRKKAIYHTTPKWRQEFSPTSSNPFLQRQKMQE
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHH
LRRAAETVWNRQK
HHHHHHHHHCCCC
>Mature Secondary Structure
MIKVFRERYRYATKKEKISILNEFVSLSGFNRNYASQVLRKKEVLKKLSTKPKTQNKRTV
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEE
YYDASVRKVLEDLWKLLDHICSKRLVHAIPETIKNLERFQTYKISKEIKQKLLKISASTI
EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ERLLVPIRKKLGIKGTSMTKQNKYLINRIPIKTFGEWKDSLPGFTQIDLIAHNGGNVFGG
HHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCHHHHHHHCCCCCEEEEEEEECCCCCHHH
FFSTLCATDVCTGWTICILVRDKTMLQMLKALIRLKNVFPYPLLGIHSDNGSEFINESII
HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHH
RFSEKYHLIFTRGRPYKKNDNPHVEQKNFSVVRRNTGYLRFDKSEHFEILVKLYSLLNLY
HHCCCEEEEEECCCCCCCCCCCCCCCCCCHHEECCCCEEEECCCHHHHHHHHHHHHHHHH
NNYFLSVMMLKEKHRIGSKSMRKYDIPKTPLQRVLKRSEIPSVNKLEIKSIYKNFDLSSI
HHHHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHH
KNEINQLQDDLIKIAAPIRSPNVKVRKRRKKAIYHTTPKWRQEFSPTSSNPFLQRQKMQE
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHH
LRRAAETVWNRQK
HHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]