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The map label for this gene is 116329526

Identifier: 116329526

GI number: 116329526

Start: 3572238

End: 3573122

Strand: Direct

Name: 116329526

Synonym: LBL_3001

Alternate gene names: NA

Gene position: 3572238-3573122 (Clockwise)

Preceding gene: 116329525

Following gene: 116329529

Centisome position: 98.83

GC content: 47.8

Gene sequence:

>885_bases
ATGGTTATTTTAAACGACCAACCACAAGAAAAAATTAAGCCTGATTGGCCGGATCTCATACGCCGGAGCTTCGCGGGGAA
CCGCGAGGTCTTGGATCAGCTTCTCGCATCTTTACAGCCTTTTGTTTTCAATCTGGCCCAGAAAATGCTCCTAAACCCGG
ACGATGCTGCAGATGCGACGCAGGAAATCCTGCTTAAAGTTGTTCTGGGTCTTCAAACCTACGATGCCAATAAGGCGAAA
TTCACAACCTGGGCGTACGCTATCGCCCGCAATCAACTCCTGAAGTTCCGCACAGGTAAGATCGAGGCTTTGACTGGTTC
GTTCGATCAGTTTGCCGAAGAAATCCATGCCGTTGCGGACGAAGTCATCGAAGCGCGCGAGCTACAGAATCCGGAGACTC
AGCTCCTGGTTAAGGAGGCAAATGTTGGCTGCATGCTCGGGATATTGTTGTGTCTCACACGCGAACAACGGATGGTTTTC
ATTCTCGGAGAATTTTTTTCTCTTAAATCTGATGTCGCTGGTGAAATTTGCGGCGTCAGCTCTGAGAATTATCGGCAGCA
ACTTTCCCGAGCAAGGAAGGATCTATATTCTTTCATGCATAATAAATGTGGTCTCGTCAATAAAGCGAATCCCTGCCGCT
GCCACCGCAAAACACGAGGATTTATCAAGGCGGGTTACGTCGATCCGCAGAATATCCGCTTCGCGGCACATCACTATAAA
AATGCGCGAATCTTTTCCGAAGAACATGCAGATGCGATGTGCGATTTGGATGATGAATACGGTCAATTGTTCCGCCGCCT
ACCTGCTTACGACGCAGGGCGTGCACTACTCACAGTGCAGAATCTTTTGAATAATGAACAGTTTAAGGATACTTTCAAAG
TATAA

Upstream 100 bases:

>100_bases
TTTTTTCCAACTATTTGAAATGGACGAAACGAAGCCAGATATGGGTGTTCTCAGTTTTGAAGATATTAAGAGTTACGGTG
AGCAGATTTAGGCAATAACT

Downstream 100 bases:

>100_bases
TGTGAATCCGAAACCCACCTGCAGAGCGACCCATAGGGAAGCTCTGCATTGAGTTTCTTTGGGTGGAGGAACTAAAGTCG
CATTACTTCCTAAGGGTTGC

Product: RNA polymerase sigma subunit

Products: NA

Alternate protein names: RNA Polymerase Sigma Factor; RNA Polymerase Sigma Subunit; ECF Subfamily RNA Polymerase Sigma-24 Factor; Sigma-70 Region 2 Family Protein; RNA Polymerase ECF-Type Sigma Factor; RNA Polymerase Sigma Factor ECF Subfamily; RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma Factor Sigma-70 Family; ECF Family RNA Polymerase Sigma Factor; Sigma-70 Family RNA Polymerase Sigma Factor

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MVILNDQPQEKIKPDWPDLIRRSFAGNREVLDQLLASLQPFVFNLAQKMLLNPDDAADATQEILLKVVLGLQTYDANKAK
FTTWAYAIARNQLLKFRTGKIEALTGSFDQFAEEIHAVADEVIEARELQNPETQLLVKEANVGCMLGILLCLTREQRMVF
ILGEFFSLKSDVAGEICGVSSENYRQQLSRARKDLYSFMHNKCGLVNKANPCRCHRKTRGFIKAGYVDPQNIRFAAHHYK
NARIFSEEHADAMCDLDDEYGQLFRRLPAYDAGRALLTVQNLLNNEQFKDTFKV

Sequences:

>Translated_294_residues
MVILNDQPQEKIKPDWPDLIRRSFAGNREVLDQLLASLQPFVFNLAQKMLLNPDDAADATQEILLKVVLGLQTYDANKAK
FTTWAYAIARNQLLKFRTGKIEALTGSFDQFAEEIHAVADEVIEARELQNPETQLLVKEANVGCMLGILLCLTREQRMVF
ILGEFFSLKSDVAGEICGVSSENYRQQLSRARKDLYSFMHNKCGLVNKANPCRCHRKTRGFIKAGYVDPQNIRFAAHHYK
NARIFSEEHADAMCDLDDEYGQLFRRLPAYDAGRALLTVQNLLNNEQFKDTFKV
>Mature_294_residues
MVILNDQPQEKIKPDWPDLIRRSFAGNREVLDQLLASLQPFVFNLAQKMLLNPDDAADATQEILLKVVLGLQTYDANKAK
FTTWAYAIARNQLLKFRTGKIEALTGSFDQFAEEIHAVADEVIEARELQNPETQLLVKEANVGCMLGILLCLTREQRMVF
ILGEFFSLKSDVAGEICGVSSENYRQQLSRARKDLYSFMHNKCGLVNKANPCRCHRKTRGFIKAGYVDPQNIRFAAHHYK
NARIFSEEHADAMCDLDDEYGQLFRRLPAYDAGRALLTVQNLLNNEQFKDTFKV

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33539; Mature: 33539

Theoretical pI: Translated: 7.07; Mature: 7.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVILNDQPQEKIKPDWPDLIRRSFAGNREVLDQLLASLQPFVFNLAQKMLLNPDDAADAT
CEECCCCCHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
QEILLKVVLGLQTYDANKAKFTTWAYAIARNQLLKFRTGKIEALTGSFDQFAEEIHAVAD
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHH
EVIEARELQNPETQLLVKEANVGCMLGILLCLTREQRMVFILGEFFSLKSDVAGEICGVS
HHHHHHHCCCCCHHEEEECCCCHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHCCCC
SENYRQQLSRARKDLYSFMHNKCGLVNKANPCRCHRKTRGFIKAGYVDPQNIRFAAHHYK
CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCEEECCCCCCCCHHHHHHCC
NARIFSEEHADAMCDLDDEYGQLFRRLPAYDAGRALLTVQNLLNNEQFKDTFKV
CCCEECHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHCC
>Mature Secondary Structure
MVILNDQPQEKIKPDWPDLIRRSFAGNREVLDQLLASLQPFVFNLAQKMLLNPDDAADAT
CEECCCCCHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
QEILLKVVLGLQTYDANKAKFTTWAYAIARNQLLKFRTGKIEALTGSFDQFAEEIHAVAD
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHH
EVIEARELQNPETQLLVKEANVGCMLGILLCLTREQRMVFILGEFFSLKSDVAGEICGVS
HHHHHHHCCCCCHHEEEECCCCHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHCCCC
SENYRQQLSRARKDLYSFMHNKCGLVNKANPCRCHRKTRGFIKAGYVDPQNIRFAAHHYK
CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCEEECCCCCCCCHHHHHHCC
NARIFSEEHADAMCDLDDEYGQLFRRLPAYDAGRALLTVQNLLNNEQFKDTFKV
CCCEECHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA