Click here to switch to the map view.

The map label for this gene is ompR [C]

Identifier: 116329405

GI number: 116329405

Start: 3422632

End: 3423405

Strand: Direct

Name: ompR [C]

Synonym: LBL_2870

Alternate gene names: 116329405

Gene position: 3422632-3423405 (Clockwise)

Preceding gene: 116329404

Following gene: 116329409

Centisome position: 94.69

GC content: 36.18

Gene sequence:

>774_bases
TTGAAGCTACTCATTTTAGATTCCGGTACAACCTTCAGAAAAATCATATCGTCTTTTTTTCCCGCGGAAGACTTTCAAAT
CGTCGAAGCGGGTTCGGCAAAAGAAGGATTGGATCTTACGTTTCGGGAAAATTTCGATTTAATTACGATCGGAATGATTC
TTCCGGACTCGGACGGATTTACGATCTGTAAAACCATACGAAACGACTTACGGGAAAATAAATATAATGCATGCAAAAAT
TCTAAAATATATCTCGTTACTTCCGGAGATGTCGAATCAAACCGTACAAAATCTATGGAATTCGGATTTGACGGAATTTT
TCCGAAGCCATCGGGAATCGAAGAATTGAAATTAGTAATTAAGGAAATTATAAAATTCTCTTACCAAAAGAATTCTATAG
AACAACGAAAAGTCGGAAAAATCCTCATTGTAGACGATTCAGAACTCAATTTACTTCTTTTAGGAAAAATACTTGAAAGG
AACGGTTATTCCTTTCAAGCATTTACAGAAGGAAAAAAGGCGTACGAATACCTTCAAACTTCCGGGGAAAATATTTCTTA
TATTCTCACCGACTGGATCATGCCCGGCTTTTCAGGACAAGAACTCGTGGAAACAATCCGCAAACAGGAAAAATTCGACA
AAATTCCGATCACGGTGATTACGGGACTTGAGGAAAATGTAGGTTTGAATATTTCGGTCTCTCAAAAAAACGTTTCCATT
CTTCAAAAACCGTATTTTGAAAGAAAAATTTTAGAATACATTCGCAAAGTTTAA

Upstream 100 bases:

>100_bases
AAATCATGGACGACCCAAAACAAATCTTTGATGAATTGAAAAAATATATTCAAATTTTTGAGACTTCGATTTCAAAAACC
CATCTGAGAGAAAAACAAGC

Downstream 100 bases:

>100_bases
TTTACGACGGGAAATTGAATTTCCCGAACCACATCCGGATGGCAGTCCTCTCTGAATTCCCCCAAAAAAGGTTTTAAACC
GGAAAACCACTGTCCGTTTT

Product: response regulator

Products: NA

Alternate protein names: Two-Component Response Regulator; Response Regulator; Signal Transduction Histidine Kinase; Response Regulator Receiver Protein

Number of amino acids: Translated: 257; Mature: 257

Protein sequence:

>257_residues
MKLLILDSGTTFRKIISSFFPAEDFQIVEAGSAKEGLDLTFRENFDLITIGMILPDSDGFTICKTIRNDLRENKYNACKN
SKIYLVTSGDVESNRTKSMEFGFDGIFPKPSGIEELKLVIKEIIKFSYQKNSIEQRKVGKILIVDDSELNLLLLGKILER
NGYSFQAFTEGKKAYEYLQTSGENISYILTDWIMPGFSGQELVETIRKQEKFDKIPITVITGLEENVGLNISVSQKNVSI
LQKPYFERKILEYIRKV

Sequences:

>Translated_257_residues
MKLLILDSGTTFRKIISSFFPAEDFQIVEAGSAKEGLDLTFRENFDLITIGMILPDSDGFTICKTIRNDLRENKYNACKN
SKIYLVTSGDVESNRTKSMEFGFDGIFPKPSGIEELKLVIKEIIKFSYQKNSIEQRKVGKILIVDDSELNLLLLGKILER
NGYSFQAFTEGKKAYEYLQTSGENISYILTDWIMPGFSGQELVETIRKQEKFDKIPITVITGLEENVGLNISVSQKNVSI
LQKPYFERKILEYIRKV
>Mature_257_residues
MKLLILDSGTTFRKIISSFFPAEDFQIVEAGSAKEGLDLTFRENFDLITIGMILPDSDGFTICKTIRNDLRENKYNACKN
SKIYLVTSGDVESNRTKSMEFGFDGIFPKPSGIEELKLVIKEIIKFSYQKNSIEQRKVGKILIVDDSELNLLLLGKILER
NGYSFQAFTEGKKAYEYLQTSGENISYILTDWIMPGFSGQELVETIRKQEKFDKIPITVITGLEENVGLNISVSQKNVSI
LQKPYFERKILEYIRKV

Specific function: The N-Terminus Of This Protein Is Required For The Transcriptional Expression Of Both Major Outer Membrane Protein Genes Ompf And Ompc; Its Carboxyl-Terminal Moiety Mediates The Multimerization Of The Ompr Protein. As A Multimer, It Turns On The Expressi

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29331; Mature: 29331

Theoretical pI: Translated: 5.58; Mature: 5.58

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLLILDSGTTFRKIISSFFPAEDFQIVEAGSAKEGLDLTFRENFDLITIGMILPDSDGF
CEEEEEECCCHHHHHHHHHCCCCCCEEEECCCCCCCCEEEEECCCCEEEEEEEEECCCCH
TICKTIRNDLRENKYNACKNSKIYLVTSGDVESNRTKSMEFGFDGIFPKPSGIEELKLVI
HHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCEECCCCCCCCCCCCHHHHHHHH
KEIIKFSYQKNSIEQRKVGKILIVDDSELNLLLLGKILERNGYSFQAFTEGKKAYEYLQT
HHHHHHHHCCCCHHHHHCCEEEEEECCCCCEEEEHHHHHCCCCEEEEECCHHHHHHHHHC
SGENISYILTDWIMPGFSGQELVETIRKQEKFDKIPITVITGLEENVGLNISVSQKNVSI
CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEECCCCHHH
LQKPYFERKILEYIRKV
HHCCHHHHHHHHHHHCC
>Mature Secondary Structure
MKLLILDSGTTFRKIISSFFPAEDFQIVEAGSAKEGLDLTFRENFDLITIGMILPDSDGF
CEEEEEECCCHHHHHHHHHCCCCCCEEEECCCCCCCCEEEEECCCCEEEEEEEEECCCCH
TICKTIRNDLRENKYNACKNSKIYLVTSGDVESNRTKSMEFGFDGIFPKPSGIEELKLVI
HHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCEECCCCCCCCCCCCHHHHHHHH
KEIIKFSYQKNSIEQRKVGKILIVDDSELNLLLLGKILERNGYSFQAFTEGKKAYEYLQT
HHHHHHHHCCCCHHHHHCCEEEEEECCCCCEEEEHHHHHCCCCEEEEECCHHHHHHHHHC
SGENISYILTDWIMPGFSGQELVETIRKQEKFDKIPITVITGLEENVGLNISVSQKNVSI
CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEECCCCHHH
LQKPYFERKILEYIRKV
HHCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA