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The map label for this gene is yfbE [C]

Identifier: 116329366

GI number: 116329366

Start: 3361880

End: 3362983

Strand: Direct

Name: yfbE [C]

Synonym: LBL_2822

Alternate gene names: 116329366

Gene position: 3361880-3362983 (Clockwise)

Preceding gene: 116329365

Following gene: 116329367

Centisome position: 93.01

GC content: 40.94

Gene sequence:

>1104_bases
ATGAGTAGCATCGAAACTGAAATTTCGGAAAAAAATCTTAAAAAAAAGACGGAAATCGAATTTCACAAACCTACTCTATC
CAGGGAGGATTTGAAAACTGTTCTCGAATGCTTAGTTGAAGACCACCTCACAACCGGAAATGTGACGATACGTTTCGAAA
AAGCATTCGCTTCCACCTTTCGTTATAAACAGGTCATTTCCAGCAACAACCTCACCTCTGCATATCACCTTATCCTTCTC
GCACTTGATATCCAAGCAGGCGACAAAGTGGTCCTCTCCACCTTCGCGCCCGTTTCTGCACTAGATGCGGTTTTTCTTTT
AAAAGCAATTCCAGTCGTAATCGATTTGGATAAAAACTCCTTTCATTTGAGTCCAGAAGGGCTTACAAAAGCGCTCCAAG
ACTCTTCCGTGAAAGCGATTCTTTTGGATCATTCTTTCGGGTCCATTGCAGACGCAAAACGTTACGACTTTCAGGAAATT
CCAGTTATCGAAGATATTTCCGAAGTTTTAGGCGCTCAAAGCGCGACATTCACTCCGGGAAAACAAGGCAATATCGCTGT
TTGTGGACTTTCCGTAGACCAGATGATTACAACCGGAAACGGTGCGATGATCATTACCGATCAAGAATCTTTGGCTAAAA
AAATCCGCACCATGAAAGCCGGTAAAGAACCTTACCAAAGAAAAGAAGGACAACCTAAATTAGATTACAATCTCATCGAC
TACCAAGCCGCCCTCGGAATCGAACAACTTTCCAAAATCGGAATCATCTTAGAAAGAAAAAGAAAGATCGCACAAGTTTA
TCTTCAGTCTATCTCGGGAAGTTCGGTAAAAACTTGGTATGGTGATCCGAATCTGGATACGTTTAACCGTTTTATTATTC
TTGCACCGGGAAGTTACGAACAGGTTGAAAGATACTTTCGTTCCTTACAGATCGGAACCCAAAAAGTAGCGGAAGAACCG
ATTCATCATATTTTGGAACTTCCAAATTCAGACTTCCCGAATGGAGAAAAACTCTTTCAAAGAGGTCATTGTATTCCGAT
TTATCCCAACCTGACAAAAGATAATATCCAAAGAATTTCTCAGGCAATCCGTAGAATTTATTAA

Upstream 100 bases:

>100_bases
CTCAAAACCTGCATTTTACAAGGCATAGAAAAAGGTCTTTACGAGATAGAATTCAAATACAAAATGCGACATAATAAAAT
TATAAGAGCCCAAGTTGGAT

Downstream 100 bases:

>100_bases
GACCTTGTCTGTTCAGAGGACTGAGGACTGACGAACTCGCTTCGTTCTAGACAAAGGACAGAAAGAAACGGGGGAGATAG
TACATCACGAATTTAAAATG

Product: pyridoxal phosphate-dependent aminotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 367; Mature: 366

Protein sequence:

>367_residues
MSSIETEISEKNLKKKTEIEFHKPTLSREDLKTVLECLVEDHLTTGNVTIRFEKAFASTFRYKQVISSNNLTSAYHLILL
ALDIQAGDKVVLSTFAPVSALDAVFLLKAIPVVIDLDKNSFHLSPEGLTKALQDSSVKAILLDHSFGSIADAKRYDFQEI
PVIEDISEVLGAQSATFTPGKQGNIAVCGLSVDQMITTGNGAMIITDQESLAKKIRTMKAGKEPYQRKEGQPKLDYNLID
YQAALGIEQLSKIGIILERKRKIAQVYLQSISGSSVKTWYGDPNLDTFNRFIILAPGSYEQVERYFRSLQIGTQKVAEEP
IHHILELPNSDFPNGEKLFQRGHCIPIYPNLTKDNIQRISQAIRRIY

Sequences:

>Translated_367_residues
MSSIETEISEKNLKKKTEIEFHKPTLSREDLKTVLECLVEDHLTTGNVTIRFEKAFASTFRYKQVISSNNLTSAYHLILL
ALDIQAGDKVVLSTFAPVSALDAVFLLKAIPVVIDLDKNSFHLSPEGLTKALQDSSVKAILLDHSFGSIADAKRYDFQEI
PVIEDISEVLGAQSATFTPGKQGNIAVCGLSVDQMITTGNGAMIITDQESLAKKIRTMKAGKEPYQRKEGQPKLDYNLID
YQAALGIEQLSKIGIILERKRKIAQVYLQSISGSSVKTWYGDPNLDTFNRFIILAPGSYEQVERYFRSLQIGTQKVAEEP
IHHILELPNSDFPNGEKLFQRGHCIPIYPNLTKDNIQRISQAIRRIY
>Mature_366_residues
SSIETEISEKNLKKKTEIEFHKPTLSREDLKTVLECLVEDHLTTGNVTIRFEKAFASTFRYKQVISSNNLTSAYHLILLA
LDIQAGDKVVLSTFAPVSALDAVFLLKAIPVVIDLDKNSFHLSPEGLTKALQDSSVKAILLDHSFGSIADAKRYDFQEIP
VIEDISEVLGAQSATFTPGKQGNIAVCGLSVDQMITTGNGAMIITDQESLAKKIRTMKAGKEPYQRKEGQPKLDYNLIDY
QAALGIEQLSKIGIILERKRKIAQVYLQSISGSSVKTWYGDPNLDTFNRFIILAPGSYEQVERYFRSLQIGTQKVAEEPI
HHILELPNSDFPNGEKLFQRGHCIPIYPNLTKDNIQRISQAIRRIY

Specific function: Unknown

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=380, Percent_Identity=27.6315789473684, Blast_Score=127, Evalue=1e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 41075; Mature: 40943

Theoretical pI: Translated: 7.25; Mature: 7.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSIETEISEKNLKKKTEIEFHKPTLSREDLKTVLECLVEDHLTTGNVTIRFEKAFASTF
CCCHHHHHHHHHCCHHCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHH
RYKQVISSNNLTSAYHLILLALDIQAGDKVVLSTFAPVSALDAVFLLKAIPVVIDLDKNS
HHHHHHCCCCCHHHHEEEHEEEECCCCCEEEEECCCCHHHHHHHHHHHHCCEEEEECCCC
FHLSPEGLTKALQDSSVKAILLDHSFGSIADAKRYDFQEIPVIEDISEVLGAQSATFTPG
EEECHHHHHHHHHCCCCEEEEEECCCCCCHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCC
KQGNIAVCGLSVDQMITTGNGAMIITDQESLAKKIRTMKAGKEPYQRKEGQPKLDYNLID
CCCCEEEEECCHHHEEECCCCEEEEECHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCHHH
YQAALGIEQLSKIGIILERKRKIAQVYLQSISGSSVKTWYGDPNLDTFNRFIILAPGSYE
HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEEEECCCCHH
QVERYFRSLQIGTQKVAEEPIHHILELPNSDFPNGEKLFQRGHCIPIYPNLTKDNIQRIS
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCEEEECCCCCHHHHHHHH
QAIRRIY
HHHHHCC
>Mature Secondary Structure 
SSIETEISEKNLKKKTEIEFHKPTLSREDLKTVLECLVEDHLTTGNVTIRFEKAFASTF
CCHHHHHHHHHCCHHCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHH
RYKQVISSNNLTSAYHLILLALDIQAGDKVVLSTFAPVSALDAVFLLKAIPVVIDLDKNS
HHHHHHCCCCCHHHHEEEHEEEECCCCCEEEEECCCCHHHHHHHHHHHHCCEEEEECCCC
FHLSPEGLTKALQDSSVKAILLDHSFGSIADAKRYDFQEIPVIEDISEVLGAQSATFTPG
EEECHHHHHHHHHCCCCEEEEEECCCCCCHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCC
KQGNIAVCGLSVDQMITTGNGAMIITDQESLAKKIRTMKAGKEPYQRKEGQPKLDYNLID
CCCCEEEEECCHHHEEECCCCEEEEECHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCHHH
YQAALGIEQLSKIGIILERKRKIAQVYLQSISGSSVKTWYGDPNLDTFNRFIILAPGSYE
HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEEEECCCCHH
QVERYFRSLQIGTQKVAEEPIHHILELPNSDFPNGEKLFQRGHCIPIYPNLTKDNIQRIS
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCEEEECCCCCHHHHHHHH
QAIRRIY
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]