Click here to switch to the map view.

The map label for this gene is rpoE [C]

Identifier: 116329334

GI number: 116329334

Start: 3302255

End: 3302779

Strand: Direct

Name: rpoE [C]

Synonym: LBL_2782

Alternate gene names: 116329334

Gene position: 3302255-3302779 (Clockwise)

Preceding gene: 116329333

Following gene: 116329335

Centisome position: 91.36

GC content: 33.33

Gene sequence:

>525_bases
ATGAAATTAAATCAAGATCACGATTTTTCTCTATTTTATCGAAACTACAAAGACTCGATTTACAAGATAATCCGTTTTCT
TTCCTCCGATCCCGAAGAAGTGGAAGATATCGCTCAGGAAGTTTTTTTGAACATATATAAAGCATTTCCGAATTTTTCAC
CGGAAAAAGGAAGTTTTTACGCATGGGCAGCTACGATTGCAAAAAATACTTACTATACTTATCGAAAAAAAAGAAAGAAG
GATTTGTTAATGGAGGGAGGCGGTGCTTTTGTAGAATCGGTTTCGGTAAAAGATGATTTTATTCGGACAATAGAAACACA
AATCGTGGAGAATGAATTGAGAGAAATTATTGCCTCCTTACCAGAACCGGAAAAAAGCATCATCTTATTGAAAGAAATCA
ACAATTATACTTTAGAAAAAACGTCACAAGCGTTGAACATATCTTCGAGAACCGTAAGTAGGAAACTATTAAAGGCATTG
GATCTACTTAGAATAGAATTAGAAAGAAAAAAAGTGGTATTATAA

Upstream 100 bases:

>100_bases
TTCGGAGAATCGTTTTTAATTTCAATAGTCGAAAGCGAACTGAAATTTTCTTAAGAGAAAAATCCATCCAGTTTGAATTC
TTACACGTAGAATATAAATT

Downstream 100 bases:

>100_bases
TTATGGAAAATAAAGATCTACAAGAAGAATTTGAAGAGCTGATGTCCTTGTTTCTTTTTGGAGAAACCGAGTTAAAAGAA
AACAAAAGATTAAACGAAAT

Product: RNA polymerase sigma subunit

Products: NA

Alternate protein names: RNA Polymerase Sigma Subunit; RNA Polymerase Sigma Factor RpoE; ECF-Like Sigma Factor SigE

Number of amino acids: Translated: 174; Mature: 174

Protein sequence:

>174_residues
MKLNQDHDFSLFYRNYKDSIYKIIRFLSSDPEEVEDIAQEVFLNIYKAFPNFSPEKGSFYAWAATIAKNTYYTYRKKRKK
DLLMEGGGAFVESVSVKDDFIRTIETQIVENELREIIASLPEPEKSIILLKEINNYTLEKTSQALNISSRTVSRKLLKAL
DLLRIELERKKVVL

Sequences:

>Translated_174_residues
MKLNQDHDFSLFYRNYKDSIYKIIRFLSSDPEEVEDIAQEVFLNIYKAFPNFSPEKGSFYAWAATIAKNTYYTYRKKRKK
DLLMEGGGAFVESVSVKDDFIRTIETQIVENELREIIASLPEPEKSIILLKEINNYTLEKTSQALNISSRTVSRKLLKAL
DLLRIELERKKVVL
>Mature_174_residues
MKLNQDHDFSLFYRNYKDSIYKIIRFLSSDPEEVEDIAQEVFLNIYKAFPNFSPEKGSFYAWAATIAKNTYYTYRKKRKK
DLLMEGGGAFVESVSVKDDFIRTIETQIVENELREIIASLPEPEKSIILLKEINNYTLEKTSQALNISSRTVSRKLLKAL
DLLRIELERKKVVL

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Is Involved In Heat Shock And Oxidative Stress Response; It Is Believed To Control Protein Processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20342; Mature: 20342

Theoretical pI: Translated: 9.12; Mature: 9.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLNQDHDFSLFYRNYKDSIYKIIRFLSSDPEEVEDIAQEVFLNIYKAFPNFSPEKGSFY
CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH
AWAATIAKNTYYTYRKKRKKDLLMEGGGAFVESVSVKDDFIRTIETQIVENELREIIASL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHC
PEPEKSIILLKEINNYTLEKTSQALNISSRTVSRKLLKALDLLRIELERKKVVL
CCCCHHEEEEECCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKLNQDHDFSLFYRNYKDSIYKIIRFLSSDPEEVEDIAQEVFLNIYKAFPNFSPEKGSFY
CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH
AWAATIAKNTYYTYRKKRKKDLLMEGGGAFVESVSVKDDFIRTIETQIVENELREIIASL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHC
PEPEKSIILLKEINNYTLEKTSQALNISSRTVSRKLLKALDLLRIELERKKVVL
CCCCHHEEEEECCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA