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The map label for this gene is spsF [H]

Identifier: 116329124

GI number: 116329124

Start: 3017667

End: 3019241

Strand: Direct

Name: spsF [H]

Synonym: LBL_2547

Alternate gene names: 116329124

Gene position: 3017667-3019241 (Clockwise)

Preceding gene: 116329123

Following gene: 116329125

Centisome position: 83.49

GC content: 43.68

Gene sequence:

>1575_bases
ATGAGTGGTATACGTTCAACGCGTAATATTTACGCATTCATTCAGGCTCGGACGGGTTCCGCAAGACTTCCCGGTAAGGT
TTTACGAGAGCTTCCTTCCGGTTCCGGAAAAACTCTCATCGACAGAATCCAAGACAGAATTCGAGTCGTCCTTCCCGAAG
AACAAATCGTGTATTTGATTCCCGAAGCGGATCAGGAGCTTCGTTCCTTTTTAGAAAATAGGAAGTATCGTTTTTTTACT
GGAGATCCTCTCGACGTAAGACTGAGGTATATAAAAGCCGCAGAATTTTTCAAAGCGGAAGCGATTCTGCGTCTCACAGG
CGATAATCCGTTTTACGATACGCTTCACTTGGACCAACTTTTACAGTCGTTTCAATTTACAAAACCGGATCTTGCTTATG
TGACGGAACTCCCTTTGGGTATGGGAGGAGAAATCTTTACAAGAAAGGCCCTTGAGTGGTGCCCTCAAGTCCTCGAAGAA
AGACACAAAGAACACGTAAGTCTTTCCATAAAAGAGAACCCGCATCGATTTCGAATCACCAAACTTTCCTCTTTGCTTAC
CGAAAAAGAAAAGCAAGTTTTACCGAAACTCAGACTTACGGTCGACGAGCCGAAAGATTTCGAAACTGTCTCCCGAATTT
TCAATCTGCTCAACGATCGGAATCCTTTTTTCGGAGCGAAAGAGTGTATCCAACTTTTCGAAAAAGAACCGAACGTTTTT
GTGGGAAACCAAGACGTGGAACAAATCCGTTTTCAAACTCAATCCACGAAAATGACAAATCAGTTTCGTGTCGGAATTTT
AGTCGGAGATCCGAAAAAATTCGGAAGCGGCCATTTTGAACGTTCTAGAATTCTCTTCGCATTATTGTCCGCGGCTTCTT
ACAAAACGTTCTGGCTTGAGGACTTTCCCGCCGACGGCGAGTTGGATTTGCTCGTAGTGGATTCCAGAGACATTCCAATT
CCAGAATATTCAAAAACAAGAATTTTTCTTTTGGATCACTTCGGTCCGGATAGGAAAAAATACGGTCATTACGATCTTCT
TCCCCATCCGACAATTTCGGATCGTTTTTCTTTGGATCGGATTTTAATTTCTCCCGGACTTTTGAATGTGGATCCAATAT
CGAATTCCTTCCTTCTTTGTTATGCCGGGAGCATAAATTCCTCAAAAGAATTGGATTTTTTCCTTTCGTCCTTACTTTCG
AAGGATAAAAGTCTATCTCAAATCGTTCGTGTGGGCGGTGCGCCTCCCGTCGGAAACTCGATCGAATTTATACCTCGAGT
TTCCCGGTTTCAGTTTCAAAATTTATTGGCGTCTTGCTCCGGGTTTGTAAGTTATTTCGGTCAGTCTCTTTTTGAAGCGG
TCTTTTTAAAGAAGAGGATTTGCAGTTACTCGATCAGCCCGATTCATTCCTCCCTGGCCCGTTTCTGCGAGCAAAAATTC
GGAATTCCTTTTGCCGGCGAATTAAGTTCCGGTGGATTGGATTCCAACACAGAGCCTTCAGTCGCTTTCCAGTCCGTTTC
CGGCGAGGGATATTCTTTGTTACTCCGGGAAATCGAAGAGTTCCTGCATTCTTAG

Upstream 100 bases:

>100_bases
AAAGAAACCCTAATGCAAATTTGGCAAAAAGGTCTGCCTTCTTTCGCCGATTCGTTAAACGGAAAACATGAAACTACGGG
TGCACCCTGCCTGAATTGTG

Downstream 100 bases:

>100_bases
AATTGACCGTAAGAGTTTCGACGGTTAAATACACGGAAACTCATTTGTTTCATTATGGACTTATTGAATGATTGCAACTG
ATTTCTTTTAAGGTTTTGTT

Product: CMP-KDO synthetase related protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 524; Mature: 523

Protein sequence:

>524_residues
MSGIRSTRNIYAFIQARTGSARLPGKVLRELPSGSGKTLIDRIQDRIRVVLPEEQIVYLIPEADQELRSFLENRKYRFFT
GDPLDVRLRYIKAAEFFKAEAILRLTGDNPFYDTLHLDQLLQSFQFTKPDLAYVTELPLGMGGEIFTRKALEWCPQVLEE
RHKEHVSLSIKENPHRFRITKLSSLLTEKEKQVLPKLRLTVDEPKDFETVSRIFNLLNDRNPFFGAKECIQLFEKEPNVF
VGNQDVEQIRFQTQSTKMTNQFRVGILVGDPKKFGSGHFERSRILFALLSAASYKTFWLEDFPADGELDLLVVDSRDIPI
PEYSKTRIFLLDHFGPDRKKYGHYDLLPHPTISDRFSLDRILISPGLLNVDPISNSFLLCYAGSINSSKELDFFLSSLLS
KDKSLSQIVRVGGAPPVGNSIEFIPRVSRFQFQNLLASCSGFVSYFGQSLFEAVFLKKRICSYSISPIHSSLARFCEQKF
GIPFAGELSSGGLDSNTEPSVAFQSVSGEGYSLLLREIEEFLHS

Sequences:

>Translated_524_residues
MSGIRSTRNIYAFIQARTGSARLPGKVLRELPSGSGKTLIDRIQDRIRVVLPEEQIVYLIPEADQELRSFLENRKYRFFT
GDPLDVRLRYIKAAEFFKAEAILRLTGDNPFYDTLHLDQLLQSFQFTKPDLAYVTELPLGMGGEIFTRKALEWCPQVLEE
RHKEHVSLSIKENPHRFRITKLSSLLTEKEKQVLPKLRLTVDEPKDFETVSRIFNLLNDRNPFFGAKECIQLFEKEPNVF
VGNQDVEQIRFQTQSTKMTNQFRVGILVGDPKKFGSGHFERSRILFALLSAASYKTFWLEDFPADGELDLLVVDSRDIPI
PEYSKTRIFLLDHFGPDRKKYGHYDLLPHPTISDRFSLDRILISPGLLNVDPISNSFLLCYAGSINSSKELDFFLSSLLS
KDKSLSQIVRVGGAPPVGNSIEFIPRVSRFQFQNLLASCSGFVSYFGQSLFEAVFLKKRICSYSISPIHSSLARFCEQKF
GIPFAGELSSGGLDSNTEPSVAFQSVSGEGYSLLLREIEEFLHS
>Mature_523_residues
SGIRSTRNIYAFIQARTGSARLPGKVLRELPSGSGKTLIDRIQDRIRVVLPEEQIVYLIPEADQELRSFLENRKYRFFTG
DPLDVRLRYIKAAEFFKAEAILRLTGDNPFYDTLHLDQLLQSFQFTKPDLAYVTELPLGMGGEIFTRKALEWCPQVLEER
HKEHVSLSIKENPHRFRITKLSSLLTEKEKQVLPKLRLTVDEPKDFETVSRIFNLLNDRNPFFGAKECIQLFEKEPNVFV
GNQDVEQIRFQTQSTKMTNQFRVGILVGDPKKFGSGHFERSRILFALLSAASYKTFWLEDFPADGELDLLVVDSRDIPIP
EYSKTRIFLLDHFGPDRKKYGHYDLLPHPTISDRFSLDRILISPGLLNVDPISNSFLLCYAGSINSSKELDFFLSSLLSK
DKSLSQIVRVGGAPPVGNSIEFIPRVSRFQFQNLLASCSGFVSYFGQSLFEAVFLKKRICSYSISPIHSSLARFCEQKFG
IPFAGELSSGGLDSNTEPSVAFQSVSGEGYSLLLREIEEFLHS

Specific function: Unknown

COG id: COG1861

COG function: function code M; Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CMP-NeuNAc synthase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003329 [H]

Pfam domain/function: PF02348 CTP_transf_3 [H]

EC number: NA

Molecular weight: Translated: 59645; Mature: 59514

Theoretical pI: Translated: 7.58; Mature: 7.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGIRSTRNIYAFIQARTGSARLPGKVLRELPSGSGKTLIDRIQDRIRVVLPEEQIVYLI
CCCCCCCCEEEEEEEECCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHEEEECCCCEEEEE
PEADQELRSFLENRKYRFFTGDPLDVRLRYIKAAEFFKAEAILRLTGDNPFYDTLHLDQL
CCCCHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHH
LQSFQFTKPDLAYVTELPLGMGGEIFTRKALEWCPQVLEERHKEHVSLSIKENPHRFRIT
HHHHCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCEEEHH
KLSSLLTEKEKQVLPKLRLTVDEPKDFETVSRIFNLLNDRNPFFGAKECIQLFEKEPNVF
HHHHHHHHHHHHHCCHHEEECCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCEE
VGNQDVEQIRFQTQSTKMTNQFRVGILVGDPKKFGSGHFERSRILFALLSAASYKTFWLE
ECCCCHHHHHHHHHHHCCCCEEEEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCEEEEE
DFPADGELDLLVVDSRDIPIPEYSKTRIFLLDHFGPDRKKYGHYDLLPHPTISDRFSLDR
CCCCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCH
ILISPGLLNVDPISNSFLLCYAGSINSSKELDFFLSSLLSKDKSLSQIVRVGGAPPVGNS
HEECCCCEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCC
IEFIPRVSRFQFQNLLASCSGFVSYFGQSLFEAVFLKKRICSYSISPIHSSLARFCEQKF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC
GIPFAGELSSGGLDSNTEPSVAFQSVSGEGYSLLLREIEEFLHS
CCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure 
SGIRSTRNIYAFIQARTGSARLPGKVLRELPSGSGKTLIDRIQDRIRVVLPEEQIVYLI
CCCCCCCEEEEEEEECCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHEEEECCCCEEEEE
PEADQELRSFLENRKYRFFTGDPLDVRLRYIKAAEFFKAEAILRLTGDNPFYDTLHLDQL
CCCCHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHH
LQSFQFTKPDLAYVTELPLGMGGEIFTRKALEWCPQVLEERHKEHVSLSIKENPHRFRIT
HHHHCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCEEEHH
KLSSLLTEKEKQVLPKLRLTVDEPKDFETVSRIFNLLNDRNPFFGAKECIQLFEKEPNVF
HHHHHHHHHHHHHCCHHEEECCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCEE
VGNQDVEQIRFQTQSTKMTNQFRVGILVGDPKKFGSGHFERSRILFALLSAASYKTFWLE
ECCCCHHHHHHHHHHHCCCCEEEEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCEEEEE
DFPADGELDLLVVDSRDIPIPEYSKTRIFLLDHFGPDRKKYGHYDLLPHPTISDRFSLDR
CCCCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCH
ILISPGLLNVDPISNSFLLCYAGSINSSKELDFFLSSLLSKDKSLSQIVRVGGAPPVGNS
HEECCCCEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCC
IEFIPRVSRFQFQNLLASCSGFVSYFGQSLFEAVFLKKRICSYSISPIHSSLARFCEQKF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC
GIPFAGELSSGGLDSNTEPSVAFQSVSGEGYSLLLREIEEFLHS
CCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]