Click here to switch to the map view.

The map label for this gene is ccmF [H]

Identifier: 116329101

GI number: 116329101

Start: 2988818

End: 2991007

Strand: Direct

Name: ccmF [H]

Synonym: LBL_2522

Alternate gene names: 116329101

Gene position: 2988818-2991007 (Clockwise)

Preceding gene: 116329100

Following gene: 116329102

Centisome position: 82.69

GC content: 43.29

Gene sequence:

>2190_bases
ATGAATGATTTCGGCGCACTTTGCATCATCACTTCTTTCGCGATTCTTCTTTTTTCGATCGTTCAGACTTCTTACGGAAT
TTGGAAACAAGACCGACAAGCAATCGAATTAGGCAGATATACCCTAGCGGCAAACACCGCGGTTATTCTTCTCGCTTTTA
TCGTTCTGCTCGTTCAACTTTTCAGAACCGACCTCTCAAATTATTACGTGGTGATGCATTCGAATGAACACCTTCCCTTA
TTTTACAGACTTACCGGAATCTGGTCCGGATCTTCAGGTTCTCTTCTCTTTTGGAATCTCTTACTTTCCGTTTTTACGTT
CATCGTTCTTTGGCAAACCAGAGAACTCGTTCAGGATCGAATCCCGATCATGAATCTCACGTTAGCCGTCATTTCAGCTT
TTTTTTCCTATCTCGCCGTATTTTATCCGGACGCACAACCATTTCGGGAATTTCAACCGGCCGCCGTCGCGGGAAGGGGC
CTAAATCCGCTTCTGCAACACTGGGCGATGGTGATTCACCCTCCGATCCTTTATGTGGGCTATGTGAGTTTTGCAATCCC
TTTTGCGATCGCCACATCCGCTTTGATCACGGGACATCTTTCCGAAAACTGGTTTCGTTTTGTAAGAAGATGGACTATCT
TCTCTTGGTTTTTTTTGGGAACCGGAATTCTTCTCGGATCGAAATGGGCCTACGAGGAATTGGGCTGGGGAGGTTATTGG
GCTTGGGATCCTGTGGAAAACGCGTCTCTGATGCCTTGGCTGTTATCGACGGCATTTCTTCATTCCATGATCATACAGGA
AAGAAGAGGAATGTTAAAGTTTTGGAATATGCTTTTGATTATCTTCGCTTTCCATTTTTGTTTATTGGGAACTTGGATCA
CTCGAAGCGGCGTCCTCGAAGGTCCTCATAGTTTTTCAAAGTCCACAATCGGAACTCCCTTCATCATCTACATCGGAGTG
AGTTTATTTTTCTTTCTGGGGTTTCTGATCTATCGCAGGAATTCACTCAAACCCGAACGCAATCTTGAAGCCTTAACTTC
CAAAGAAGGAAGTTTTCTTTTTAACAACTTTCTACTAGTAATTGCAACTCTTGCGATTCTTCTCGGAGTTTTCTCACCTC
TTCTTTACGGAAGAGAGTTCAAAGCCCCCTGGTTTAATTCCTGGGGAGTTCCTGCGGGAATTCTTTTAATGCTTTTGATG
GGTTCGGCTCCGCTTCTGGCTTGGAGAAAGGGGGCGGATAAGATTTTCTTTTCCACTCTCATCAAACCGTTGTTAGTCGG
CTTTGCAGGAGCCGGCGTTTATATCCTTTTCTATAGGCGGAATTTTACAATCAGCGATTACAGCCTTGGAGACGTTTTAG
GCGAAGTGTATTCTGTGATCGCGGTCGGTCTCGGAATTTTTACGATTTCCGGAATCCTCCAAGAATATCACAGAGGTATT
CTTGCGCGAAAAACTTCCTATCCCGGAGAAAATTATTTCTTTGCCGGTTTCAGAATGCTTTTGAAAAACAAAAGAAGATA
CGGCGGTTATCTTGTTCACTTGGCGATGGTAATCCTTTTTATCGGTTACGCAGGGAATGCGTTCAAACAAAACACTTCCA
TTAAATTTTTCTATTTTTTAAACGCTCCCGAAAATAACGAAATCGTTTATTCCAGCCAGGATACGGGGATTTTAGGAAAC
TATCAGATCTCCGCGGACACCCTCAAAATCAAACCCCTTGTAAACGGGGACGCAAAAAACGGATTGAACATACAGAACGT
AATCGTTTCTCACGAGGCGACTTTTCAGGTTAAACGTCATTTGAAAGAATTCTCCACAATGGTAACCGAAAGAAGATTTT
ATCCTCAGATCTCGCACTTAAGCGGAGAATTTGAAACTCATATTCCTACAAGCGAGCCCTCGATCACTTCCACTCCGAAA
GAAGATTTATACATTCAGTTGGGCGCCGTGGAACATTCCGATCTTTCGGATGAAAATCCGGATCTCCCTCTTCTTTTTAT
GAATTATCTTTTTACGAACGAAAATCAACCCGTCCGCAAATTGGAGAACTTTAATCGATTTCCGAGACAGATCGTCGCCA
ATCTTGAAGTCTGGATAAACCCACTCGTAAAATTCATCTGGGCGGGCTCATTGTTATTTTTCTTTTCGGGACTTTTGATT
CTTCTTCCAATCGGAGAATCCAGATCATGA

Upstream 100 bases:

>100_bases
ACGGAGTGTTAGTCTCGGATCACGTAGAAGCGAAATGCGCCTCCAAATACGAAGCCGATTATTCGGAAGAAAACAAATAA
AAGGATTACGTTTTTTTAAT

Downstream 100 bases:

>100_bases
AAATAGAATTTTATAAAATTCTAATTCTCTTAACGTTTTTATTCGTTTACGTCTTTGGTTCGTCTTTGTCTGCCGATTCC
ACCTTCACAAACCTGACGGA

Product: cytochrome c biogenesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 729; Mature: 729

Protein sequence:

>729_residues
MNDFGALCIITSFAILLFSIVQTSYGIWKQDRQAIELGRYTLAANTAVILLAFIVLLVQLFRTDLSNYYVVMHSNEHLPL
FYRLTGIWSGSSGSLLFWNLLLSVFTFIVLWQTRELVQDRIPIMNLTLAVISAFFSYLAVFYPDAQPFREFQPAAVAGRG
LNPLLQHWAMVIHPPILYVGYVSFAIPFAIATSALITGHLSENWFRFVRRWTIFSWFFLGTGILLGSKWAYEELGWGGYW
AWDPVENASLMPWLLSTAFLHSMIIQERRGMLKFWNMLLIIFAFHFCLLGTWITRSGVLEGPHSFSKSTIGTPFIIYIGV
SLFFFLGFLIYRRNSLKPERNLEALTSKEGSFLFNNFLLVIATLAILLGVFSPLLYGREFKAPWFNSWGVPAGILLMLLM
GSAPLLAWRKGADKIFFSTLIKPLLVGFAGAGVYILFYRRNFTISDYSLGDVLGEVYSVIAVGLGIFTISGILQEYHRGI
LARKTSYPGENYFFAGFRMLLKNKRRYGGYLVHLAMVILFIGYAGNAFKQNTSIKFFYFLNAPENNEIVYSSQDTGILGN
YQISADTLKIKPLVNGDAKNGLNIQNVIVSHEATFQVKRHLKEFSTMVTERRFYPQISHLSGEFETHIPTSEPSITSTPK
EDLYIQLGAVEHSDLSDENPDLPLLFMNYLFTNENQPVRKLENFNRFPRQIVANLEVWINPLVKFIWAGSLLFFFSGLLI
LLPIGESRS

Sequences:

>Translated_729_residues
MNDFGALCIITSFAILLFSIVQTSYGIWKQDRQAIELGRYTLAANTAVILLAFIVLLVQLFRTDLSNYYVVMHSNEHLPL
FYRLTGIWSGSSGSLLFWNLLLSVFTFIVLWQTRELVQDRIPIMNLTLAVISAFFSYLAVFYPDAQPFREFQPAAVAGRG
LNPLLQHWAMVIHPPILYVGYVSFAIPFAIATSALITGHLSENWFRFVRRWTIFSWFFLGTGILLGSKWAYEELGWGGYW
AWDPVENASLMPWLLSTAFLHSMIIQERRGMLKFWNMLLIIFAFHFCLLGTWITRSGVLEGPHSFSKSTIGTPFIIYIGV
SLFFFLGFLIYRRNSLKPERNLEALTSKEGSFLFNNFLLVIATLAILLGVFSPLLYGREFKAPWFNSWGVPAGILLMLLM
GSAPLLAWRKGADKIFFSTLIKPLLVGFAGAGVYILFYRRNFTISDYSLGDVLGEVYSVIAVGLGIFTISGILQEYHRGI
LARKTSYPGENYFFAGFRMLLKNKRRYGGYLVHLAMVILFIGYAGNAFKQNTSIKFFYFLNAPENNEIVYSSQDTGILGN
YQISADTLKIKPLVNGDAKNGLNIQNVIVSHEATFQVKRHLKEFSTMVTERRFYPQISHLSGEFETHIPTSEPSITSTPK
EDLYIQLGAVEHSDLSDENPDLPLLFMNYLFTNENQPVRKLENFNRFPRQIVANLEVWINPLVKFIWAGSLLFFFSGLLI
LLPIGESRS
>Mature_729_residues
MNDFGALCIITSFAILLFSIVQTSYGIWKQDRQAIELGRYTLAANTAVILLAFIVLLVQLFRTDLSNYYVVMHSNEHLPL
FYRLTGIWSGSSGSLLFWNLLLSVFTFIVLWQTRELVQDRIPIMNLTLAVISAFFSYLAVFYPDAQPFREFQPAAVAGRG
LNPLLQHWAMVIHPPILYVGYVSFAIPFAIATSALITGHLSENWFRFVRRWTIFSWFFLGTGILLGSKWAYEELGWGGYW
AWDPVENASLMPWLLSTAFLHSMIIQERRGMLKFWNMLLIIFAFHFCLLGTWITRSGVLEGPHSFSKSTIGTPFIIYIGV
SLFFFLGFLIYRRNSLKPERNLEALTSKEGSFLFNNFLLVIATLAILLGVFSPLLYGREFKAPWFNSWGVPAGILLMLLM
GSAPLLAWRKGADKIFFSTLIKPLLVGFAGAGVYILFYRRNFTISDYSLGDVLGEVYSVIAVGLGIFTISGILQEYHRGI
LARKTSYPGENYFFAGFRMLLKNKRRYGGYLVHLAMVILFIGYAGNAFKQNTSIKFFYFLNAPENNEIVYSSQDTGILGN
YQISADTLKIKPLVNGDAKNGLNIQNVIVSHEATFQVKRHLKEFSTMVTERRFYPQISHLSGEFETHIPTSEPSITSTPK
EDLYIQLGAVEHSDLSDENPDLPLLFMNYLFTNENQPVRKLENFNRFPRQIVANLEVWINPLVKFIWAGSLLFFFSGLLI
LLPIGESRS

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG1138

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

Organism=Escherichia coli, GI1788524, Length=729, Percent_Identity=29.9039780521262, Blast_Score=252, Evalue=7e-68,
Organism=Escherichia coli, GI1790511, Length=345, Percent_Identity=35.9420289855072, Blast_Score=192, Evalue=7e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR003567
- InterPro:   IPR003568 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 82957; Mature: 82957

Theoretical pI: Translated: 9.36; Mature: 9.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDFGALCIITSFAILLFSIVQTSYGIWKQDRQAIELGRYTLAANTAVILLAFIVLLVQL
CCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
FRTDLSNYYVVMHSNEHLPLFYRLTGIWSGSSGSLLFWNLLLSVFTFIVLWQTRELVQDR
HHHCCCCEEEEEECCCCCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
IPIMNLTLAVISAFFSYLAVFYPDAQPFREFQPAAVAGRGLNPLLQHWAMVIHPPILYVG
CCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHCCCCCCHHHHHHHHHHCCHHHHHH
YVSFAIPFAIATSALITGHLSENWFRFVRRWTIFSWFFLGTGILLGSKWAYEELGWGGYW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCEE
AWDPVENASLMPWLLSTAFLHSMIIQERRGMLKFWNMLLIIFAFHFCLLGTWITRSGVLE
CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
GPHSFSKSTIGTPFIIYIGVSLFFFLGFLIYRRNSLKPERNLEALTSKEGSFLFNNFLLV
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCHHHHHHHHH
IATLAILLGVFSPLLYGREFKAPWFNSWGVPAGILLMLLMGSAPLLAWRKGADKIFFSTL
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHCCCHHHHHHHH
IKPLLVGFAGAGVYILFYRRNFTISDYSLGDVLGEVYSVIAVGLGIFTISGILQEYHRGI
HHHHHHHHCCCCEEEEEEECCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LARKTSYPGENYFFAGFRMLLKNKRRYGGYLVHLAMVILFIGYAGNAFKQNTSIKFFYFL
HHCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEE
NAPENNEIVYSSQDTGILGNYQISADTLKIKPLVNGDAKNGLNIQNVIVSHEATFQVKRH
ECCCCCCEEEECCCCCEEECEEEECCEEEEEEEECCCCCCCCCHHHEEECCHHHHHHHHH
LKEFSTMVTERRFYPQISHLSGEFETHIPTSEPSITSTPKEDLYIQLGAVEHSDLSDENP
HHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECEECCCCCCCCC
DLPLLFMNYLFTNENQPVRKLENFNRFPRQIVANLEVWINPLVKFIWAGSLLFFFSGLLI
CCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHE
LLPIGESRS
EEECCCCCC
>Mature Secondary Structure
MNDFGALCIITSFAILLFSIVQTSYGIWKQDRQAIELGRYTLAANTAVILLAFIVLLVQL
CCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
FRTDLSNYYVVMHSNEHLPLFYRLTGIWSGSSGSLLFWNLLLSVFTFIVLWQTRELVQDR
HHHCCCCEEEEEECCCCCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
IPIMNLTLAVISAFFSYLAVFYPDAQPFREFQPAAVAGRGLNPLLQHWAMVIHPPILYVG
CCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHCCCCCCHHHHHHHHHHCCHHHHHH
YVSFAIPFAIATSALITGHLSENWFRFVRRWTIFSWFFLGTGILLGSKWAYEELGWGGYW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCEE
AWDPVENASLMPWLLSTAFLHSMIIQERRGMLKFWNMLLIIFAFHFCLLGTWITRSGVLE
CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
GPHSFSKSTIGTPFIIYIGVSLFFFLGFLIYRRNSLKPERNLEALTSKEGSFLFNNFLLV
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCHHHHHHHHH
IATLAILLGVFSPLLYGREFKAPWFNSWGVPAGILLMLLMGSAPLLAWRKGADKIFFSTL
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHCCCHHHHHHHH
IKPLLVGFAGAGVYILFYRRNFTISDYSLGDVLGEVYSVIAVGLGIFTISGILQEYHRGI
HHHHHHHHCCCCEEEEEEECCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LARKTSYPGENYFFAGFRMLLKNKRRYGGYLVHLAMVILFIGYAGNAFKQNTSIKFFYFL
HHCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEE
NAPENNEIVYSSQDTGILGNYQISADTLKIKPLVNGDAKNGLNIQNVIVSHEATFQVKRH
ECCCCCCEEEECCCCCEEECEEEECCEEEEEEEECCCCCCCCCHHHEEECCHHHHHHHHH
LKEFSTMVTERRFYPQISHLSGEFETHIPTSEPSITSTPKEDLYIQLGAVEHSDLSDENP
HHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECEECCCCCCCCC
DLPLLFMNYLFTNENQPVRKLENFNRFPRQIVANLEVWINPLVKFIWAGSLLFFFSGLLI
CCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHE
LLPIGESRS
EEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]