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The map label for this gene is cirA [C]

Identifier: 116329097

GI number: 116329097

Start: 2984406

End: 2986739

Strand: Direct

Name: cirA [C]

Synonym: LBL_2518

Alternate gene names: 116329097

Gene position: 2984406-2986739 (Clockwise)

Preceding gene: 116329096

Following gene: 116329098

Centisome position: 82.57

GC content: 43.62

Gene sequence:

>2334_bases
TTGAAAGAGCAAGTACATTTGTATTTTAGAATATTCATAGTTTCAATTTTTTTCTCTCCGGTTTCCGTTTTCGCTTTAGA
CGTTGCATTAATCGGCTTTATTAAAAACAAAAACGGAAAACCGATTTCGAACGCGAGGGTTCTTATCCAAGAGTCCAGAA
AAAGTGCGGTTACAAACGAAAATGGCGAGTTCGTTTTAGACCACGTCCCTCCGGGAAAATACGTTCTGACCGCCAGCGCA
AGAGGTTATCAATCGGAAACACTTTCGGTTACGATCGGAGAAAAAGACCAAAAAACCCAATTCATCCTCCTCGAAAGTTC
TTTGGACGGTTCCGCAATCAATGTCACCGCAAAATCCACAATTTCGGATTTTCTAACCTCTCCACAACCGATTACGGTTT
TGTCAGGCAGACAACTCGATCGTCAAAGAGGAGAAACGGCAATGTCGGCGATCAACAATACTCCCGGAGTTTCCAACTTA
ACCACGGGGGCTGGAACTTCAAAACCGATCGTCCGAGGTTTAACAGGGCAAAGAGTCCTTGTAATGACCGACGGAATCCG
CCAGGAAGAACAACAATTCGGAGACGACCACACAGTAGAATTAGATTCCTTTAATATTCAAAAAATTGAAATAATTCGAG
GACCGGGAAGTTTACTTTACGGTTCGGACGCTCTCGCCGGAGTAGTCAACGTGATCCGAGACAAAGCTCCTCGTTCGGGA
GAAGGTGTTCCCCAAATGGCGGGACTTTTCAACTCCAACAGCTATTCGAACAACAAACAAGACGCAGGAAATTTTGCGAT
ATACGGCAACGTGGACGGGTTCGGCTACCACGCCAGTGCAAATACGAGAAAAGCGGGAAAAATTACGACTCCAAACGGAA
CGATGCCTAACACAGGTATGATTGAAAAAAATCAAAATGCATCGATCGGTTTAGACGGAAAATGGGGAAATTTTTATCTG
GATTCTTTCCGAAGAGAACAAACTCAGGATCTATTGGACAATCCGAACGAAAATCCGGGTTCAACGGTTCATCAAAAACT
TCTTCATGAGAAATCTCATTTTCATTCTTTCCTTATTTTTCCCGCAGGAAACCTGGAACTCGATTTTTCCTACCAAAGGA
ACAATCGAAGAGAAATCGAATCCAAAAATAAACTCTTTCCTATCAAAGACGTTCTTCGGGACGAGAACGTAGACATTTTC
GACAAATCATTTCAATTCTATCAGGCCACTTCAAAGGCAAAATACCAAGGTCTAAATCTTCTTTTAGATACGACGACCGC
AGACGCAAAGTTTCATCACAAACCTATATTCAATCTTTTGCAAGGAACCCTAGGCGTTTCCGGTTTGGAACAAAGGAATA
GAACGATCGGAACGGAACCTTTGATTCCTTCCTATGGAATTGTAAACATAGCCGGTTATTTTCTGGAGGAACTCAAACTC
GGCTCCCTGACTCTGAGTGCGGGAGTCCGGGGCGATAAAAGATCCGCAGACATCAAAAACAACATGACTTTGGGTATCGC
GGAACAAACCAAAAATTATTATGCGACAACGAACTCGACTGGTCTCGTTTGGAGAATCGATAAATCTTTTTCCGCAATTT
TAAACTATGGACGCGGATTTAGGGCGCCTACCCCGTTCGAACTTTTTTCCAACGGAGTTCACGAAGGTACGGGAAAATTC
GAAATAGGAAAAGACTCCTTTAAACCCGAATATGCGAATAATCTAGACTTTTCCGTCAGATACGCTTCCTCTCGGATTCA
AATGGAAGTTAACGTATTTCAAAATCAGATTCAAAATTTCATATATGCCGCAAGTATCGCGGAAATCGATCCCAACTCCG
GCCTGCCGAAGTACAAATACAAACAGGGAAACGCCGTTTTAAAAGGAGGGGAATTTTCGATCCAAGCTGAACTCACTAAC
AAACTAGTTTTTTCCGGCGGAATCGATATTGTTTATGCAAGAAATCAGAACGACACCAACCCTCTTCCCCGAACAACTCC
GAATCGGGCGCGTGCGGGCCTTCGATGGACGGAAGGTTCTATTTTGGGGCTAAAGGATTTCTATTTTTCCATCAACGGAA
GATTTTACGATTCTCAGTATAGGGTCGATCCTAAGGAAACCCCAACCAAAGGTTATAATCTTACGGACATCGGGCTCGGT
TTCGAACTTCCCTACTTAGGAGACGGAACGTCTCGGCCCTCGGTGGACCTGAACGTCCAAAACGTATTCAATGTTTCTTA
TGTGGATCATCTCAGCAGATACAAAGACTACGCTCTCAACCCGGGCGTGAATGTAATTCTCAAAATCTCATTTCCGTTCA
CGGTCGTTCCATAG

Upstream 100 bases:

>100_bases
TCCAGCTCGGTCGAGCGCCTCCTTTTTCAATTTCCATCTCTTAAATCATTTTTTTCCGATTTTATTTGATTGAATGGATT
TTTTGTCCAGGAGGTTCGGC

Downstream 100 bases:

>100_bases
GAGATCTCATGAAAAAGTATATTCTCATTTTATTAATAATTCCGATTCTGTTCTGCCAAAAGGACAAACGAGAACAGGAC
CAACTCATTCGTTTACTTGT

Product: TonB dependent receptor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 777; Mature: 777

Protein sequence:

>777_residues
MKEQVHLYFRIFIVSIFFSPVSVFALDVALIGFIKNKNGKPISNARVLIQESRKSAVTNENGEFVLDHVPPGKYVLTASA
RGYQSETLSVTIGEKDQKTQFILLESSLDGSAINVTAKSTISDFLTSPQPITVLSGRQLDRQRGETAMSAINNTPGVSNL
TTGAGTSKPIVRGLTGQRVLVMTDGIRQEEQQFGDDHTVELDSFNIQKIEIIRGPGSLLYGSDALAGVVNVIRDKAPRSG
EGVPQMAGLFNSNSYSNNKQDAGNFAIYGNVDGFGYHASANTRKAGKITTPNGTMPNTGMIEKNQNASIGLDGKWGNFYL
DSFRREQTQDLLDNPNENPGSTVHQKLLHEKSHFHSFLIFPAGNLELDFSYQRNNRREIESKNKLFPIKDVLRDENVDIF
DKSFQFYQATSKAKYQGLNLLLDTTTADAKFHHKPIFNLLQGTLGVSGLEQRNRTIGTEPLIPSYGIVNIAGYFLEELKL
GSLTLSAGVRGDKRSADIKNNMTLGIAEQTKNYYATTNSTGLVWRIDKSFSAILNYGRGFRAPTPFELFSNGVHEGTGKF
EIGKDSFKPEYANNLDFSVRYASSRIQMEVNVFQNQIQNFIYAASIAEIDPNSGLPKYKYKQGNAVLKGGEFSIQAELTN
KLVFSGGIDIVYARNQNDTNPLPRTTPNRARAGLRWTEGSILGLKDFYFSINGRFYDSQYRVDPKETPTKGYNLTDIGLG
FELPYLGDGTSRPSVDLNVQNVFNVSYVDHLSRYKDYALNPGVNVILKISFPFTVVP

Sequences:

>Translated_777_residues
MKEQVHLYFRIFIVSIFFSPVSVFALDVALIGFIKNKNGKPISNARVLIQESRKSAVTNENGEFVLDHVPPGKYVLTASA
RGYQSETLSVTIGEKDQKTQFILLESSLDGSAINVTAKSTISDFLTSPQPITVLSGRQLDRQRGETAMSAINNTPGVSNL
TTGAGTSKPIVRGLTGQRVLVMTDGIRQEEQQFGDDHTVELDSFNIQKIEIIRGPGSLLYGSDALAGVVNVIRDKAPRSG
EGVPQMAGLFNSNSYSNNKQDAGNFAIYGNVDGFGYHASANTRKAGKITTPNGTMPNTGMIEKNQNASIGLDGKWGNFYL
DSFRREQTQDLLDNPNENPGSTVHQKLLHEKSHFHSFLIFPAGNLELDFSYQRNNRREIESKNKLFPIKDVLRDENVDIF
DKSFQFYQATSKAKYQGLNLLLDTTTADAKFHHKPIFNLLQGTLGVSGLEQRNRTIGTEPLIPSYGIVNIAGYFLEELKL
GSLTLSAGVRGDKRSADIKNNMTLGIAEQTKNYYATTNSTGLVWRIDKSFSAILNYGRGFRAPTPFELFSNGVHEGTGKF
EIGKDSFKPEYANNLDFSVRYASSRIQMEVNVFQNQIQNFIYAASIAEIDPNSGLPKYKYKQGNAVLKGGEFSIQAELTN
KLVFSGGIDIVYARNQNDTNPLPRTTPNRARAGLRWTEGSILGLKDFYFSINGRFYDSQYRVDPKETPTKGYNLTDIGLG
FELPYLGDGTSRPSVDLNVQNVFNVSYVDHLSRYKDYALNPGVNVILKISFPFTVVP
>Mature_777_residues
MKEQVHLYFRIFIVSIFFSPVSVFALDVALIGFIKNKNGKPISNARVLIQESRKSAVTNENGEFVLDHVPPGKYVLTASA
RGYQSETLSVTIGEKDQKTQFILLESSLDGSAINVTAKSTISDFLTSPQPITVLSGRQLDRQRGETAMSAINNTPGVSNL
TTGAGTSKPIVRGLTGQRVLVMTDGIRQEEQQFGDDHTVELDSFNIQKIEIIRGPGSLLYGSDALAGVVNVIRDKAPRSG
EGVPQMAGLFNSNSYSNNKQDAGNFAIYGNVDGFGYHASANTRKAGKITTPNGTMPNTGMIEKNQNASIGLDGKWGNFYL
DSFRREQTQDLLDNPNENPGSTVHQKLLHEKSHFHSFLIFPAGNLELDFSYQRNNRREIESKNKLFPIKDVLRDENVDIF
DKSFQFYQATSKAKYQGLNLLLDTTTADAKFHHKPIFNLLQGTLGVSGLEQRNRTIGTEPLIPSYGIVNIAGYFLEELKL
GSLTLSAGVRGDKRSADIKNNMTLGIAEQTKNYYATTNSTGLVWRIDKSFSAILNYGRGFRAPTPFELFSNGVHEGTGKF
EIGKDSFKPEYANNLDFSVRYASSRIQMEVNVFQNQIQNFIYAASIAEIDPNSGLPKYKYKQGNAVLKGGEFSIQAELTN
KLVFSGGIDIVYARNQNDTNPLPRTTPNRARAGLRWTEGSILGLKDFYFSINGRFYDSQYRVDPKETPTKGYNLTDIGLG
FELPYLGDGTSRPSVDLNVQNVFNVSYVDHLSRYKDYALNPGVNVILKISFPFTVVP

Specific function: Probable receptor, tonB-dependent [H]

COG id: COG1629

COG function: function code P; Outer membrane receptor proteins, mostly Fe transport

Gene ontology:

Cell location: Cell outer membrane (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tonB-dependent receptor family [H]

Homologues:

Organism=Escherichia coli, GI1788478, Length=141, Percent_Identity=32.6241134751773, Blast_Score=70, Evalue=5e-13,
Organism=Escherichia coli, GI1790405, Length=134, Percent_Identity=36.5671641791045, Blast_Score=69, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR000531 [H]

Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]

EC number: NA

Molecular weight: Translated: 86062; Mature: 86062

Theoretical pI: Translated: 9.17; Mature: 9.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEQVHLYFRIFIVSIFFSPVSVFALDVALIGFIKNKNGKPISNARVLIQESRKSAVTNE
CCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCEEEEEHHHHHHCCCC
NGEFVLDHVPPGKYVLTASARGYQSETLSVTIGEKDQKTQFILLESSLDGSAINVTAKST
CCCEEEEECCCCCEEEEECCCCCCCCEEEEEECCCCCCEEEEEEECCCCCCEEEEEEHHH
ISDFLTSPQPITVLSGRQLDRQRGETAMSAINNTPGVSNLTTGAGTSKPIVRGLTGQRVL
HHHHHCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCEEE
VMTDGIRQEEQQFGDDHTVELDSFNIQKIEIIRGPGSLLYGSDALAGVVNVIRDKAPRSG
EEECCCCHHHHHCCCCCEEEECCCCCEEEEEEECCCCEEECCHHHHHHHHHHHHCCCCCC
EGVPQMAGLFNSNSYSNNKQDAGNFAIYGNVDGFGYHASANTRKAGKITTPNGTMPNTGM
CCCHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCCCEEECCCCCCCCCCC
IEKNQNASIGLDGKWGNFYLDSFRREQTQDLLDNPNENPGSTVHQKLLHEKSHFHSFLIF
EECCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCEEEEE
PAGNLELDFSYQRNNRREIESKNKLFPIKDVLRDENVDIFDKSFQFYQATSKAKYQGLNL
ECCCEEEEEEECCCCCHHHHHCCCEECHHHHHCCCCCCEECCCHHHHHHHCCHHHCCCEE
LLDTTTADAKFHHKPIFNLLQGTLGVSGLEQRNRTIGTEPLIPSYGIVNIAGYFLEELKL
EEECCCCCCCCCCCHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCC
GSLTLSAGVRGDKRSADIKNNMTLGIAEQTKNYYATTNSTGLVWRIDKSFSAILNYGRGF
CEEEEECCCCCCCCCCCCCCCCEEEEEHHCCCEEEEECCCEEEEEECCHHHHHHHCCCCC
RAPTPFELFSNGVHEGTGKFEIGKDSFKPEYANNLDFSVRYASSRIQMEVNVFQNQIQNF
CCCCCHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCEEEEEECCEEEEEHHHHHHHHHHH
IYAASIAEIDPNSGLPKYKYKQGNAVLKGGEFSIQAELTNKLVFSGGIDIVYARNQNDTN
EEEEEEEEECCCCCCCCEEECCCCEEEECCCEEEEEEECCEEEEECCEEEEEECCCCCCC
PLPRTTPNRARAGLRWTEGSILGLKDFYFSINGRFYDSQYRVDPKETPTKGYNLTDIGLG
CCCCCCCHHHHCCCEECCCCEEEEEEEEEEECCEEECCEEEECCCCCCCCCCCEEEECCC
FELPYLGDGTSRPSVDLNVQNVFNVSYVDHLSRYKDYALNPGVNVILKISFPFTVVP
EECCCCCCCCCCCEEEEEHHHEEEHHHHHHHHHHHCCCCCCCCEEEEEEECCEEECC
>Mature Secondary Structure
MKEQVHLYFRIFIVSIFFSPVSVFALDVALIGFIKNKNGKPISNARVLIQESRKSAVTNE
CCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCEEEEEHHHHHHCCCC
NGEFVLDHVPPGKYVLTASARGYQSETLSVTIGEKDQKTQFILLESSLDGSAINVTAKST
CCCEEEEECCCCCEEEEECCCCCCCCEEEEEECCCCCCEEEEEEECCCCCCEEEEEEHHH
ISDFLTSPQPITVLSGRQLDRQRGETAMSAINNTPGVSNLTTGAGTSKPIVRGLTGQRVL
HHHHHCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCEEE
VMTDGIRQEEQQFGDDHTVELDSFNIQKIEIIRGPGSLLYGSDALAGVVNVIRDKAPRSG
EEECCCCHHHHHCCCCCEEEECCCCCEEEEEEECCCCEEECCHHHHHHHHHHHHCCCCCC
EGVPQMAGLFNSNSYSNNKQDAGNFAIYGNVDGFGYHASANTRKAGKITTPNGTMPNTGM
CCCHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCCCEEECCCCCCCCCCC
IEKNQNASIGLDGKWGNFYLDSFRREQTQDLLDNPNENPGSTVHQKLLHEKSHFHSFLIF
EECCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCEEEEE
PAGNLELDFSYQRNNRREIESKNKLFPIKDVLRDENVDIFDKSFQFYQATSKAKYQGLNL
ECCCEEEEEEECCCCCHHHHHCCCEECHHHHHCCCCCCEECCCHHHHHHHCCHHHCCCEE
LLDTTTADAKFHHKPIFNLLQGTLGVSGLEQRNRTIGTEPLIPSYGIVNIAGYFLEELKL
EEECCCCCCCCCCCHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCC
GSLTLSAGVRGDKRSADIKNNMTLGIAEQTKNYYATTNSTGLVWRIDKSFSAILNYGRGF
CEEEEECCCCCCCCCCCCCCCCEEEEEHHCCCEEEEECCCEEEEEECCHHHHHHHCCCCC
RAPTPFELFSNGVHEGTGKFEIGKDSFKPEYANNLDFSVRYASSRIQMEVNVFQNQIQNF
CCCCCHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCEEEEEECCEEEEEHHHHHHHHHHH
IYAASIAEIDPNSGLPKYKYKQGNAVLKGGEFSIQAELTNKLVFSGGIDIVYARNQNDTN
EEEEEEEEECCCCCCCCEEECCCCEEEECCCEEEEEEECCEEEEECCEEEEEECCCCCCC
PLPRTTPNRARAGLRWTEGSILGLKDFYFSINGRFYDSQYRVDPKETPTKGYNLTDIGLG
CCCCCCCHHHHCCCEECCCCEEEEEEEEEEECCEEECCEEEECCCCCCCCCCCEEEECCC
FELPYLGDGTSRPSVDLNVQNVFNVSYVDHLSRYKDYALNPGVNVILKISFPFTVVP
EECCCCCCCCCCCEEEEEHHHEEEHHHHHHHHHHHCCCCCCCCEEEEEEECCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10710307 [H]