BacMap

Definition	Leptospira borgpetersenii serovar Hardjo-bovis L550 chromosome 1, complete sequence.
Accession	NC_008508
Length	3,614,446

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The map label for this gene is popC [H]

Identifier: 116328837

GI number: 116328837

Start: 2609848

End: 2610255

Strand: Direct

Name: popC [H]

Synonym: LBL_2216

Alternate gene names: 116328837

Gene position: 2609848-2610255 (Clockwise)

Preceding gene: 116328833

Following gene: 116328840

Centisome position: 72.21

GC content: 33.82

Gene sequence:

>408_bases
TTGCAAAACCTGACAGAATTACATTTAAGCGAAAATCAACTCCAAGCTCTTCCCAAAGAAATCGGGAAATTGAAAAACCT
AACAGAATTATATTTAAGCGGCAATCAACTCAAAACGCTCCCAAAAGATATCGGATATCTGAAAAATCTGACAGAATTAT
ATTTAAGCGAAAATCAACTCAAAACTCTTTCCCAAGAAATCGGAAAATTGAAAAAGCTGCGAGAATTAGATTTAACCAAC
AATCAACTCAAAACTCTTCCGAACGAAATCGAATATTTGAAAAACCTACAAGAATTATATTTAGATGATATACCCGCTTG
GAGATCCCAAAAAGAAAGGATTCGGAAATTACTTCCCCAAACGCATATTAGCTTTACTAAAATAGAAAAGCAACGACCTA
ACGAATGA

Upstream 100 bases:

>100_bases
CTATCACAATCTAACCGAGGCGCTTCAAAATCCGACGGATGTCCGAATTTTAGATTTAAGCCACAAACGACTCACAACTC
TTCCAAAGGAAATCGGGGAA

Downstream 100 bases:

>100_bases
CACTGTTAGGTTTTGGGACAAACTCTGCGTATTTTTCGATATTTAGAATAGAATGAAAGTCTTTCACATTCCACCTCCAA
CCCAACCGAACCGGATCAGA

Product: leucine-rich repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 135; Mature: 135

Protein sequence:

>135_residues
MQNLTELHLSENQLQALPKEIGKLKNLTELYLSGNQLKTLPKDIGYLKNLTELYLSENQLKTLSQEIGKLKKLRELDLTN
NQLKTLPNEIEYLKNLQELYLDDIPAWRSQKERIRKLLPQTHISFTKIEKQRPNE

Sequences:

>Translated_135_residues
MQNLTELHLSENQLQALPKEIGKLKNLTELYLSGNQLKTLPKDIGYLKNLTELYLSENQLKTLSQEIGKLKKLRELDLTN
NQLKTLPNEIEYLKNLQELYLDDIPAWRSQKERIRKLLPQTHISFTKIEKQRPNE
>Mature_135_residues
MQNLTELHLSENQLQALPKEIGKLKNLTELYLSGNQLKTLPKDIGYLKNLTELYLSENQLKTLSQEIGKLKKLRELDLTN
NQLKTLPNEIEYLKNLQELYLDDIPAWRSQKERIRKLLPQTHISFTKIEKQRPNE

Specific function: Probably involved in host-pathogen interactions. May interact with plant target proteins; may modulate a plant signal transduction pathway [H]

COG id: COG4886

COG function: function code S; Leucine-rich repeat (LRR) protein

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 22 LRR (leucine-rich) repeats [H]

Homologues:

Organism=Homo sapiens, GI41281398, Length=100, Percent_Identity=48, Blast_Score=87, Evalue=4e-18,
Organism=Homo sapiens, GI95113664, Length=122, Percent_Identity=42.6229508196721, Blast_Score=81, Evalue=2e-16,
Organism=Homo sapiens, GI8923909, Length=101, Percent_Identity=40.5940594059406, Blast_Score=79, Evalue=8e-16,
Organism=Homo sapiens, GI55770895, Length=101, Percent_Identity=40.5940594059406, Blast_Score=79, Evalue=8e-16,
Organism=Homo sapiens, GI16904383, Length=100, Percent_Identity=44, Blast_Score=79, Evalue=1e-15,
Organism=Homo sapiens, GI21361633, Length=119, Percent_Identity=39.4957983193277, Blast_Score=75, Evalue=2e-14,
Organism=Homo sapiens, GI33859670, Length=90, Percent_Identity=50, Blast_Score=74, Evalue=3e-14,
Organism=Homo sapiens, GI45827729, Length=89, Percent_Identity=44.9438202247191, Blast_Score=74, Evalue=3e-14,
Organism=Homo sapiens, GI45827731, Length=89, Percent_Identity=44.9438202247191, Blast_Score=74, Evalue=3e-14,
Organism=Homo sapiens, GI61742784, Length=101, Percent_Identity=44.5544554455446, Blast_Score=74, Evalue=4e-14,
Organism=Homo sapiens, GI256017174, Length=90, Percent_Identity=50, Blast_Score=74, Evalue=4e-14,
Organism=Homo sapiens, GI61742786, Length=101, Percent_Identity=44.5544554455446, Blast_Score=74, Evalue=4e-14,
Organism=Homo sapiens, GI256017180, Length=90, Percent_Identity=50, Blast_Score=74, Evalue=4e-14,
Organism=Homo sapiens, GI153792305, Length=105, Percent_Identity=40.9523809523809, Blast_Score=72, Evalue=1e-13,
Organism=Homo sapiens, GI40217803, Length=103, Percent_Identity=38.8349514563107, Blast_Score=72, Evalue=1e-13,
Organism=Homo sapiens, GI110825984, Length=103, Percent_Identity=38.8349514563107, Blast_Score=72, Evalue=2e-13,
Organism=Homo sapiens, GI63003903, Length=94, Percent_Identity=41.4893617021277, Blast_Score=70, Evalue=5e-13,
Organism=Homo sapiens, GI53729363, Length=96, Percent_Identity=39.5833333333333, Blast_Score=70, Evalue=6e-13,
Organism=Homo sapiens, GI53729359, Length=96, Percent_Identity=39.5833333333333, Blast_Score=70, Evalue=6e-13,
Organism=Homo sapiens, GI53729361, Length=96, Percent_Identity=39.5833333333333, Blast_Score=70, Evalue=6e-13,
Organism=Homo sapiens, GI299758423, Length=96, Percent_Identity=39.5833333333333, Blast_Score=70, Evalue=6e-13,
Organism=Homo sapiens, GI187829877, Length=99, Percent_Identity=38.3838383838384, Blast_Score=70, Evalue=7e-13,
Organism=Homo sapiens, GI62241040, Length=99, Percent_Identity=38.3838383838384, Blast_Score=70, Evalue=7e-13,
Organism=Homo sapiens, GI187829871, Length=99, Percent_Identity=38.3838383838384, Blast_Score=70, Evalue=7e-13,
Organism=Homo sapiens, GI157743290, Length=98, Percent_Identity=38.7755102040816, Blast_Score=69, Evalue=1e-12,
Organism=Homo sapiens, GI28872863, Length=83, Percent_Identity=44.578313253012, Blast_Score=69, Evalue=1e-12,
Organism=Homo sapiens, GI197333706, Length=103, Percent_Identity=39.8058252427184, Blast_Score=69, Evalue=2e-12,
Organism=Homo sapiens, GI34222199, Length=103, Percent_Identity=39.8058252427184, Blast_Score=69, Evalue=2e-12,
Organism=Homo sapiens, GI40254924, Length=101, Percent_Identity=46.5346534653465, Blast_Score=68, Evalue=2e-12,
Organism=Homo sapiens, GI14249428, Length=96, Percent_Identity=39.5833333333333, Blast_Score=68, Evalue=2e-12,
Organism=Homo sapiens, GI122937315, Length=100, Percent_Identity=42, Blast_Score=68, Evalue=3e-12,
Organism=Homo sapiens, GI6912638, Length=105, Percent_Identity=41.9047619047619, Blast_Score=68, Evalue=3e-12,
Organism=Homo sapiens, GI154091020, Length=90, Percent_Identity=44.4444444444444, Blast_Score=67, Evalue=3e-12,
Organism=Homo sapiens, GI34577083, Length=103, Percent_Identity=42.7184466019417, Blast_Score=67, Evalue=4e-12,
Organism=Homo sapiens, GI30181233, Length=102, Percent_Identity=39.2156862745098, Blast_Score=67, Evalue=5e-12,
Organism=Homo sapiens, GI238908508, Length=106, Percent_Identity=34.9056603773585, Blast_Score=65, Evalue=1e-11,
Organism=Homo sapiens, GI33285015, Length=107, Percent_Identity=40.1869158878505, Blast_Score=64, Evalue=3e-11,
Organism=Homo sapiens, GI193788651, Length=110, Percent_Identity=38.1818181818182, Blast_Score=64, Evalue=5e-11,
Organism=Homo sapiens, GI223005922, Length=93, Percent_Identity=35.4838709677419, Blast_Score=63, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI71981160, Length=124, Percent_Identity=40.3225806451613, Blast_Score=79, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI71981152, Length=124, Percent_Identity=40.3225806451613, Blast_Score=79, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI71993778, Length=109, Percent_Identity=41.2844036697248, Blast_Score=75, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI71993783, Length=109, Percent_Identity=41.2844036697248, Blast_Score=75, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI71991525, Length=102, Percent_Identity=40.1960784313725, Blast_Score=74, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI71991531, Length=102, Percent_Identity=40.1960784313725, Blast_Score=74, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI25143890, Length=102, Percent_Identity=43.1372549019608, Blast_Score=67, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI25150706, Length=84, Percent_Identity=42.8571428571429, Blast_Score=66, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI71999722, Length=84, Percent_Identity=42.8571428571429, Blast_Score=66, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI71999724, Length=84, Percent_Identity=42.8571428571429, Blast_Score=66, Evalue=4e-12,
Organism=Drosophila melanogaster, GI221379725, Length=100, Percent_Identity=49, Blast_Score=81, Evalue=2e-16,
Organism=Drosophila melanogaster, GI221379722, Length=100, Percent_Identity=49, Blast_Score=81, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24650336, Length=102, Percent_Identity=44.1176470588235, Blast_Score=75, Evalue=2e-14,
Organism=Drosophila melanogaster, GI62472958, Length=102, Percent_Identity=44.1176470588235, Blast_Score=75, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24650330, Length=102, Percent_Identity=44.1176470588235, Blast_Score=75, Evalue=2e-14,
Organism=Drosophila melanogaster, GI116007092, Length=102, Percent_Identity=44.1176470588235, Blast_Score=74, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24650334, Length=102, Percent_Identity=44.1176470588235, Blast_Score=74, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24650332, Length=102, Percent_Identity=44.1176470588235, Blast_Score=74, Evalue=2e-14,
Organism=Drosophila melanogaster, GI281362655, Length=102, Percent_Identity=44.1176470588235, Blast_Score=74, Evalue=3e-14,
Organism=Drosophila melanogaster, GI281362651, Length=102, Percent_Identity=44.1176470588235, Blast_Score=74, Evalue=3e-14,
Organism=Drosophila melanogaster, GI281362657, Length=102, Percent_Identity=44.1176470588235, Blast_Score=74, Evalue=3e-14,
Organism=Drosophila melanogaster, GI281362653, Length=102, Percent_Identity=44.1176470588235, Blast_Score=74, Evalue=3e-14,
Organism=Drosophila melanogaster, GI19922294, Length=103, Percent_Identity=38.8349514563107, Blast_Score=72, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24641036, Length=114, Percent_Identity=36.8421052631579, Blast_Score=69, Evalue=1e-12,
Organism=Drosophila melanogaster, GI45550188, Length=89, Percent_Identity=44.9438202247191, Blast_Score=65, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24649579, Length=74, Percent_Identity=50, Blast_Score=64, Evalue=3e-11,
Organism=Drosophila melanogaster, GI28572072, Length=74, Percent_Identity=50, Blast_Score=64, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24649583, Length=74, Percent_Identity=50, Blast_Score=64, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24649581, Length=74, Percent_Identity=50, Blast_Score=64, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24649585, Length=74, Percent_Identity=50, Blast_Score=64, Evalue=3e-11,
Organism=Drosophila melanogaster, GI21355269, Length=105, Percent_Identity=40.9523809523809, Blast_Score=63, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001611 [H]

Pfam domain/function: PF00560 LRR_1 [H]

EC number: NA

Molecular weight: Translated: 15910; Mature: 15910

Theoretical pI: Translated: 9.58; Mature: 9.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNLTELHLSENQLQALPKEIGKLKNLTELYLSGNQLKTLPKDIGYLKNLTELYLSENQL
CCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
KTLSQEIGKLKKLRELDLTNNQLKTLPNEIEYLKNLQELYLDDIPAWRSQKERIRKLLPQ
HHHHHHHHHHHHHHHHCCCCHHHHHCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
THISFTKIEKQRPNE
HHHHHHHHHHCCCCC
>Mature Secondary Structure
MQNLTELHLSENQLQALPKEIGKLKNLTELYLSGNQLKTLPKDIGYLKNLTELYLSENQL
CCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
KTLSQEIGKLKKLRELDLTNNQLKTLPNEIEYLKNLQELYLDDIPAWRSQKERIRKLLPQ
HHHHHHHHHHHHHHHHCCCCHHHHHCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
THISFTKIEKQRPNE
HHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10792715; 11823852 [H]