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The map label for this gene is ycfF [C]

Identifier: 116328793

GI number: 116328793

Start: 2546951

End: 2547301

Strand: Direct

Name: ycfF [C]

Synonym: LBL_2168

Alternate gene names: 116328793

Gene position: 2546951-2547301 (Clockwise)

Preceding gene: 116328792

Following gene: 116328794

Centisome position: 70.47

GC content: 45.3

Gene sequence:

>351_bases
ATGAACGATCACCATTGTATTTTCTGCAAGATCATCCGTAAGGAAATTCCCTCCAAGATCGCGTTCGAAAATGAGGAAAT
ATTAGCTTTTCATGATATTTCTCCTCAAGCGCCGACCCACATCGTCTTCGTCCCAAAGAAGCACATAAAATCCCTCAGAG
AGATCGGAAACGAAGACTCTTCCCTACTCGGAAACATGCTACTCCGGATTCGAGACACCGCAAAGAATCTCGGTTTTGCG
GAAGACGGCTACAGAATCGTAAACAATACCGGAAGAAACGGAGGACAAACCGTTTTTCACATTCATTTTCATCTTTTAGC
GGAACGTCAACTGCTCTGGCCTCCGGGTTGA

Upstream 100 bases:

>100_bases
AACTTATCTTTCCGATTTTCAGAACTTATACCCAAATTCTGCCCGGAGGAAACATATCCGGAACCTTAGGCGCAGCGGCG
CTTTGTATGGAGAACCAAAA

Downstream 100 bases:

>100_bases
AACCAGGAATACCGCATTGAAACGTATTCTATTCGGAACCGTCGTCAGCGTAGCCGCTCTCGGATTTTTATTTTCAAAAC
TCGATCTGAGCGAGTTCGCA

Product: HIT family hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 116; Mature: 116

Protein sequence:

>116_residues
MNDHHCIFCKIIRKEIPSKIAFENEEILAFHDISPQAPTHIVFVPKKHIKSLREIGNEDSSLLGNMLLRIRDTAKNLGFA
EDGYRIVNNTGRNGGQTVFHIHFHLLAERQLLWPPG

Sequences:

>Translated_116_residues
MNDHHCIFCKIIRKEIPSKIAFENEEILAFHDISPQAPTHIVFVPKKHIKSLREIGNEDSSLLGNMLLRIRDTAKNLGFA
EDGYRIVNNTGRNGGQTVFHIHFHLLAERQLLWPPG
>Mature_116_residues
MNDHHCIFCKIIRKEIPSKIAFENEEILAFHDISPQAPTHIVFVPKKHIKSLREIGNEDSSLLGNMLLRIRDTAKNLGFA
EDGYRIVNNTGRNGGQTVFHIHFHLLAERQLLWPPG

Specific function: Unknown

COG id: COG0537

COG function: function code FGR; Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HIT domain [H]

Homologues:

Organism=Homo sapiens, GI4885413, Length=110, Percent_Identity=54.5454545454545, Blast_Score=131, Evalue=9e-32,
Organism=Homo sapiens, GI14211923, Length=111, Percent_Identity=45.945945945946, Blast_Score=115, Evalue=6e-27,
Organism=Escherichia coli, GI1787346, Length=106, Percent_Identity=49.0566037735849, Blast_Score=103, Evalue=3e-24,
Organism=Caenorhabditis elegans, GI17506713, Length=111, Percent_Identity=52.2522522522522, Blast_Score=132, Evalue=3e-32,
Organism=Saccharomyces cerevisiae, GI6320078, Length=107, Percent_Identity=38.3177570093458, Blast_Score=72, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24581222, Length=110, Percent_Identity=50.9090909090909, Blast_Score=123, Evalue=2e-29,
Organism=Drosophila melanogaster, GI28574010, Length=110, Percent_Identity=50.9090909090909, Blast_Score=123, Evalue=2e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011146
- InterPro:   IPR011151
- InterPro:   IPR019808
- InterPro:   IPR001310 [H]

Pfam domain/function: PF01230 HIT [H]

EC number: NA

Molecular weight: Translated: 13278; Mature: 13278

Theoretical pI: Translated: 8.29; Mature: 8.29

Prosite motif: PS00892 HIT_1 ; PS51084 HIT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDHHCIFCKIIRKEIPSKIAFENEEILAFHDISPQAPTHIVFVPKKHIKSLREIGNEDS
CCCCCCHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCEEEEEECHHHHHHHHHHCCCCH
SLLGNMLLRIRDTAKNLGFAEDGYRIVNNTGRNGGQTVFHIHFHLLAERQLLWPPG
HHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCEEEEEEEEEEECCEECCCCC
>Mature Secondary Structure
MNDHHCIFCKIIRKEIPSKIAFENEEILAFHDISPQAPTHIVFVPKKHIKSLREIGNEDS
CCCCCCHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCEEEEEECHHHHHHHHHHCCCCH
SLLGNMLLRIRDTAKNLGFAEDGYRIVNNTGRNGGQTVFHIHFHLLAERQLLWPPG
HHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCEEEEEEEEEEECCEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]