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The map label for this gene is secD [H]

Identifier: 116328773

GI number: 116328773

Start: 2521050

End: 2522978

Strand: Reverse

Name: secD [H]

Synonym: LBL_2148

Alternate gene names: 116328773

Gene position: 2522978-2521050 (Counterclockwise)

Preceding gene: 116328774

Following gene: 116328772

Centisome position: 69.8

GC content: 44.43

Gene sequence:

>1929_bases
TTGAAATCTGCGACATGGATTTTCCTGCCGCTTACTATTATTTTAGTGGCTACGGTAATACTTTATCCCAACTTTGCAAC
TAGAGAGTTGGAACTTGCGGTTAAGAAAGAATTCATTTCTCTCCCGCCGGAGCAAAAAAAGGCGATTCTTTCCCGGTTTG
AAAAACGTTGGAACTTGGAATACAAACAATCCAGCTGGACGATTACTCCTGTTCCGACCGCTTTTCAGGAAGAATCTTAT
CTTTTGGTCAAAGGTAGATTCATCACTTCCGCAAAGATCAACCAAATCTCTCAGGAAAATCCCGAGCTGATTTTGGAAGC
CAAAAGCAAACTCCGTCCAACTTTCGTGGAGGAATGGATTACCAAAGGACGTCCTCTTACGATCAAACTCGGTCTCGACT
TACAAGGTGGGATGCGGGTCGCCCTGAAAGGGGATTTCGAGGATTACACGTTTAAACTCCGTGAAAGTTATATTAAAGAA
ATTGAAACTTTACAAAAGACTGTGGCGGATTCCTCCGCCGACGAAAAGGAAAAGAAAAAAGCCGAAGATCGTCTGAGCGA
GATCGAAAGTTATTTTGAACTTTCTCCGAGCCGAAAACTTTTGGAATTGGAAAAGGCGAAACTCATCATCGATAATCGTC
TTACGAGTCAGAATCTCACAGAACCTCAAGTGCGGATTCAAAAGGATCAGGATTCCATCGAGGTTTCTCTTCCCGGTGTG
ACTAACTCTTCCCAAATTCTGGAGGTCATCCAGAACACCGAAACCGTGGAATATCGACTGGAAGAACCCGAAAATTCGGC
GGGGAACGGACTTACCTACGCGGCGATGATCCAACAGGAAGAAAATAGGCTTCTCGAACTGAAAAGAAGAGAAGAAACCG
ATATTGTTCAATATCAAAATATTGTAAAACAAAAATTAGGTAGAGCGGAACAGGATAAATTTCTGCAAGCCTTAGAAGAT
AAGTATAAAATTCCCAAGGATAAGTACAGGGTTTTCGCCTATTGGGCGAGGGGAAACAATCAAAATTCTCCTTTATTGCC
GAGACGGTTCATCGTTTTGGAAAAAGCGATCGCTCTGGACGGAAGGGATATGAGGGATGCAAGGCCTTCCTTTGAAAATA
ATTCCTTCGGTTATATTGTTTCGTTTACGTTGACCAGTTCGGGAGCCGAAAAATTCTTCGAGATCACTTCTCAAAACAAA
GGTAGAAATTTAGCGATCGTTTGGGGAGATAAAGTGGTTTCCGCTCCTACGATTCGCGGCGCAATTGCGGGTGGTGTAGC
GCAGATCGACGGTTCTTTTGCCAAAGAAGAGGCGGTGGATCTTGCAAACGTAATCAGCGAAGGAGCGCTTCCAATTCCTC
TCCGAGTTTTGGAAATGAGATTTATCGGACCCACTCTCGGGATCGAATCCATCGAAGTCGGTATGAAGGCGGTTCTGATC
GGATTCGTTCTTGTCATGTTCTATATGATTTTGATTTACCGTCTTTCCGGTTTGGTGGCCAATATCGCCCTTTTTGCGAA
CATCCTAATCCTCAGCGCTCTCCTTTCCTTGATGGGATTTACTTTGACTTTGCCTGGTTTTGCCGGGATCATTTTGACCG
TAGGTATGGCGGTTGACGCGAATGTGATCATCTACGAACGGATCAAAGAGGAATTGTGGGCCGGTAAATCCGCTGCGGTT
GCGGTGGCGCAGGGTTTCGACAATGCATTCTGGACGATCATAGACAGTAACGTAACCACGTTGATTTCCGGTATTTTGAT
GATTCGCCTAGGAAACGGTCCCATTAAAGGATTTGCGATTACGCTTTGTTGGGGGATCGTTACTTCTCTTTTTACATCCT
TGTTCTTCAGCCGTTTGGTGATGGATCTTTTGGTCAATAAGTTGGGAGTTCAAAGACTCCGGCTCGGCTTTAAAAAATTG
GAGTATTGA

Upstream 100 bases:

>100_bases
TGCTTTGTATCGATTGAAAGCGGGCAAATCGCGCGGCAATTCTAGTCGCAGATCATCCCCGGTTACGATCAATAAAATGA
GAAGAGATTAGGAGTTTCCC

Downstream 100 bases:

>100_bases
GAATGTTTGACTTTATAAAATATAAATACGTTTCCATCGGCTTTTCCTTGGTTCTAATCGTATTCGGTTTTGGTTATACG
TATTTTGTTCACGGAGGGTT

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 642; Mature: 642

Protein sequence:

>642_residues
MKSATWIFLPLTIILVATVILYPNFATRELELAVKKEFISLPPEQKKAILSRFEKRWNLEYKQSSWTITPVPTAFQEESY
LLVKGRFITSAKINQISQENPELILEAKSKLRPTFVEEWITKGRPLTIKLGLDLQGGMRVALKGDFEDYTFKLRESYIKE
IETLQKTVADSSADEKEKKKAEDRLSEIESYFELSPSRKLLELEKAKLIIDNRLTSQNLTEPQVRIQKDQDSIEVSLPGV
TNSSQILEVIQNTETVEYRLEEPENSAGNGLTYAAMIQQEENRLLELKRREETDIVQYQNIVKQKLGRAEQDKFLQALED
KYKIPKDKYRVFAYWARGNNQNSPLLPRRFIVLEKAIALDGRDMRDARPSFENNSFGYIVSFTLTSSGAEKFFEITSQNK
GRNLAIVWGDKVVSAPTIRGAIAGGVAQIDGSFAKEEAVDLANVISEGALPIPLRVLEMRFIGPTLGIESIEVGMKAVLI
GFVLVMFYMILIYRLSGLVANIALFANILILSALLSLMGFTLTLPGFAGIILTVGMAVDANVIIYERIKEELWAGKSAAV
AVAQGFDNAFWTIIDSNVTTLISGILMIRLGNGPIKGFAITLCWGIVTSLFTSLFFSRLVMDLLVNKLGVQRLRLGFKKL
EY

Sequences:

>Translated_642_residues
MKSATWIFLPLTIILVATVILYPNFATRELELAVKKEFISLPPEQKKAILSRFEKRWNLEYKQSSWTITPVPTAFQEESY
LLVKGRFITSAKINQISQENPELILEAKSKLRPTFVEEWITKGRPLTIKLGLDLQGGMRVALKGDFEDYTFKLRESYIKE
IETLQKTVADSSADEKEKKKAEDRLSEIESYFELSPSRKLLELEKAKLIIDNRLTSQNLTEPQVRIQKDQDSIEVSLPGV
TNSSQILEVIQNTETVEYRLEEPENSAGNGLTYAAMIQQEENRLLELKRREETDIVQYQNIVKQKLGRAEQDKFLQALED
KYKIPKDKYRVFAYWARGNNQNSPLLPRRFIVLEKAIALDGRDMRDARPSFENNSFGYIVSFTLTSSGAEKFFEITSQNK
GRNLAIVWGDKVVSAPTIRGAIAGGVAQIDGSFAKEEAVDLANVISEGALPIPLRVLEMRFIGPTLGIESIEVGMKAVLI
GFVLVMFYMILIYRLSGLVANIALFANILILSALLSLMGFTLTLPGFAGIILTVGMAVDANVIIYERIKEELWAGKSAAV
AVAQGFDNAFWTIIDSNVTTLISGILMIRLGNGPIKGFAITLCWGIVTSLFTSLFFSRLVMDLLVNKLGVQRLRLGFKKL
EY
>Mature_642_residues
MKSATWIFLPLTIILVATVILYPNFATRELELAVKKEFISLPPEQKKAILSRFEKRWNLEYKQSSWTITPVPTAFQEESY
LLVKGRFITSAKINQISQENPELILEAKSKLRPTFVEEWITKGRPLTIKLGLDLQGGMRVALKGDFEDYTFKLRESYIKE
IETLQKTVADSSADEKEKKKAEDRLSEIESYFELSPSRKLLELEKAKLIIDNRLTSQNLTEPQVRIQKDQDSIEVSLPGV
TNSSQILEVIQNTETVEYRLEEPENSAGNGLTYAAMIQQEENRLLELKRREETDIVQYQNIVKQKLGRAEQDKFLQALED
KYKIPKDKYRVFAYWARGNNQNSPLLPRRFIVLEKAIALDGRDMRDARPSFENNSFGYIVSFTLTSSGAEKFFEITSQNK
GRNLAIVWGDKVVSAPTIRGAIAGGVAQIDGSFAKEEAVDLANVISEGALPIPLRVLEMRFIGPTLGIESIEVGMKAVLI
GFVLVMFYMILIYRLSGLVANIALFANILILSALLSLMGFTLTLPGFAGIILTVGMAVDANVIIYERIKEELWAGKSAAV
AVAQGFDNAFWTIIDSNVTTLISGILMIRLGNGPIKGFAITLCWGIVTSLFTSLFFSRLVMDLLVNKLGVQRLRLGFKKL
EY

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=305, Percent_Identity=36.0655737704918, Blast_Score=180, Evalue=2e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001036
- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 72259; Mature: 72259

Theoretical pI: Translated: 8.65; Mature: 8.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSATWIFLPLTIILVATVILYPNFATRELELAVKKEFISLPPEQKKAILSRFEKRWNLE
CCCCCEEHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC
YKQSSWTITPVPTAFQEESYLLVKGRFITSAKINQISQENPELILEAKSKLRPTFVEEWI
EECCCEEEECCCCCCCCCCEEEEEEEEECHHHHHHHCCCCCCEEEECHHHCCHHHHHHHH
TKGRPLTIKLGLDLQGGMRVALKGDFEDYTFKLRESYIKEIETLQKTVADSSADEKEKKK
HCCCCEEEEECCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
AEDRLSEIESYFELSPSRKLLELEKAKLIIDNRLTSQNLTEPQVRIQKDQDSIEVSLPGV
HHHHHHHHHHHHHCCCCHHHHHHHHHHHEEECCCCCCCCCCCCCEEECCCCCEEEEECCC
TNSSQILEVIQNTETVEYRLEEPENSAGNGLTYAAMIQQEENRLLELKRREETDIVQYQN
CCHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEHHHHHHHHHHHHHHHHCCHHHHHHHHH
IVKQKLGRAEQDKFLQALEDKYKIPKDKYRVFAYWARGNNQNSPLLPRRFIVLEKAIALD
HHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHCC
GRDMRDARPSFENNSFGYIVSFTLTSSGAEKFFEITSQNKGRNLAIVWGDKVVSAPTIRG
CCCCCCCCCCCCCCCCEEEEEEEEECCCHHHHHHHHCCCCCCEEEEEECCCEECCCCHHH
AIAGGVAQIDGSFAKEEAVDLANVISEGALPIPLRVLEMRFIGPTLGIESIEVGMKAVLI
HHHCCHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHH
GFVLVMFYMILIYRLSGLVANIALFANILILSALLSLMGFTLTLPGFAGIILTVGMAVDA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC
NVIIYERIKEELWAGKSAAVAVAQGFDNAFWTIIDSNVTTLISGILMIRLGNGPIKGFAI
CCHHHHHHHHHHHCCCCHHEEEECCCCCCEEEEECCCHHHHHHHHHEEEECCCCCCHHHH
TLCWGIVTSLFTSLFFSRLVMDLLVNKLGVQRLRLGFKKLEY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKSATWIFLPLTIILVATVILYPNFATRELELAVKKEFISLPPEQKKAILSRFEKRWNLE
CCCCCEEHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC
YKQSSWTITPVPTAFQEESYLLVKGRFITSAKINQISQENPELILEAKSKLRPTFVEEWI
EECCCEEEECCCCCCCCCCEEEEEEEEECHHHHHHHCCCCCCEEEECHHHCCHHHHHHHH
TKGRPLTIKLGLDLQGGMRVALKGDFEDYTFKLRESYIKEIETLQKTVADSSADEKEKKK
HCCCCEEEEECCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
AEDRLSEIESYFELSPSRKLLELEKAKLIIDNRLTSQNLTEPQVRIQKDQDSIEVSLPGV
HHHHHHHHHHHHHCCCCHHHHHHHHHHHEEECCCCCCCCCCCCCEEECCCCCEEEEECCC
TNSSQILEVIQNTETVEYRLEEPENSAGNGLTYAAMIQQEENRLLELKRREETDIVQYQN
CCHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEHHHHHHHHHHHHHHHHCCHHHHHHHHH
IVKQKLGRAEQDKFLQALEDKYKIPKDKYRVFAYWARGNNQNSPLLPRRFIVLEKAIALD
HHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHCC
GRDMRDARPSFENNSFGYIVSFTLTSSGAEKFFEITSQNKGRNLAIVWGDKVVSAPTIRG
CCCCCCCCCCCCCCCCEEEEEEEEECCCHHHHHHHHCCCCCCEEEEEECCCEECCCCHHH
AIAGGVAQIDGSFAKEEAVDLANVISEGALPIPLRVLEMRFIGPTLGIESIEVGMKAVLI
HHHCCHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHH
GFVLVMFYMILIYRLSGLVANIALFANILILSALLSLMGFTLTLPGFAGIILTVGMAVDA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC
NVIIYERIKEELWAGKSAAVAVAQGFDNAFWTIIDSNVTTLISGILMIRLGNGPIKGFAI
CCHHHHHHHHHHHCCCCHHEEEECCCCCCEEEEECCCHHHHHHHHHEEEECCCCCCHHHH
TLCWGIVTSLFTSLFFSRLVMDLLVNKLGVQRLRLGFKKLEY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA