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The map label for this gene is secF [H]

Identifier: 116328772

GI number: 116328772

Start: 2520109

End: 2521047

Strand: Reverse

Name: secF [H]

Synonym: LBL_2147

Alternate gene names: 116328772

Gene position: 2521047-2520109 (Counterclockwise)

Preceding gene: 116328773

Following gene: 116328771

Centisome position: 69.75

GC content: 40.89

Gene sequence:

>939_bases
ATGTTTGACTTTATAAAATATAAATACGTTTCCATCGGCTTTTCCTTGGTTCTAATCGTATTCGGTTTTGGTTATACGTA
TTTTGTTCACGGAGGGTTTGCGAATTCTTTGGATTTTAACGGGGGACTTAGAACCGTGATCGAATTCGACCAAAATACGG
ACCGCAAAAAATTGGAAAGTTATTTTGCGGAAAATAAGATCGAAGCGGTGTTATTGCTCTTGGATAAAGAAAAACATCAT
TATCAAATCGATATTGGTCTTGGTTCTTTAGATCTCATTCTACAAAAATACAAGGAAAAGAGCGGATTGAAACCTACGGA
CAAGGTGGAGCTTTCCGGTATCGACGCCCTTATCTCTATCCTGATTGCGGATTTTGGAATTGATAAAAGTAATGTACTCA
GCGCCAATCAGGTTGGTGCGATCGTAGGAGGTGAACTTTCTTCTACTGGAATCACTCTGCTTGGACTAACGATGGCGATT
ATTCTCGCATATATTAGTTTTCGGTTTCAATTCAAATTCGCCTTGGGAGCGATTGTGGCCTTGACCCACGATTTAATATT
GACTGTTGCGTTTATCGGGTTTTTCCAAATCAAACCGAGTGTTCCAATCATCGCCGCTCTTTTGACTCTCCTAGGGTATT
CGATCAACGATACGATCGTCGTTTTCGATCGAATTCGGGAGAATTCGTCCGGAAATTTAGATCAAACTTTCGGTGAGACT
ATCAATGCCGCGATCAATCAAACTCTAGGAAGAACGTTTAATACATCTTTTGCGACTTTGATCTCCATTGTTGCGATTAT
CATTGGAGGGGCGACCGAACTTTTCGACTTCGCTTATATACTCACCTTCGGGATTATTATCGGAACGTATTCTTCCATTT
TTATTGCGGCCCCTCTCGTGGATATCTACGACCATATTATACGAAAGGCTCGAGACTGA

Upstream 100 bases:

>100_bases
TTACATCCTTGTTCTTCAGCCGTTTGGTGATGGATCTTTTGGTCAATAAGTTGGGAGTTCAAAGACTCCGGCTCGGCTTT
AAAAAATTGGAGTATTGAGA

Downstream 100 bases:

>100_bases
TGACTCTGCTCCCGGAAGAATTTCGGGAGGAATTGCGTAAACTTTCCTTTTTATCGACGGGCGAAAGTTCTCCGAATCCG
CCCGTTTCTTGCCTTATCAC

Product: preprotein translocase subunit SecF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 312; Mature: 312

Protein sequence:

>312_residues
MFDFIKYKYVSIGFSLVLIVFGFGYTYFVHGGFANSLDFNGGLRTVIEFDQNTDRKKLESYFAENKIEAVLLLLDKEKHH
YQIDIGLGSLDLILQKYKEKSGLKPTDKVELSGIDALISILIADFGIDKSNVLSANQVGAIVGGELSSTGITLLGLTMAI
ILAYISFRFQFKFALGAIVALTHDLILTVAFIGFFQIKPSVPIIAALLTLLGYSINDTIVVFDRIRENSSGNLDQTFGET
INAAINQTLGRTFNTSFATLISIVAIIIGGATELFDFAYILTFGIIIGTYSSIFIAAPLVDIYDHIIRKARD

Sequences:

>Translated_312_residues
MFDFIKYKYVSIGFSLVLIVFGFGYTYFVHGGFANSLDFNGGLRTVIEFDQNTDRKKLESYFAENKIEAVLLLLDKEKHH
YQIDIGLGSLDLILQKYKEKSGLKPTDKVELSGIDALISILIADFGIDKSNVLSANQVGAIVGGELSSTGITLLGLTMAI
ILAYISFRFQFKFALGAIVALTHDLILTVAFIGFFQIKPSVPIIAALLTLLGYSINDTIVVFDRIRENSSGNLDQTFGET
INAAINQTLGRTFNTSFATLISIVAIIIGGATELFDFAYILTFGIIIGTYSSIFIAAPLVDIYDHIIRKARD
>Mature_312_residues
MFDFIKYKYVSIGFSLVLIVFGFGYTYFVHGGFANSLDFNGGLRTVIEFDQNTDRKKLESYFAENKIEAVLLLLDKEKHH
YQIDIGLGSLDLILQKYKEKSGLKPTDKVELSGIDALISILIADFGIDKSNVLSANQVGAIVGGELSSTGITLLGLTMAI
ILAYISFRFQFKFALGAIVALTHDLILTVAFIGFFQIKPSVPIIAALLTLLGYSINDTIVVFDRIRENSSGNLDQTFGET
INAAINQTLGRTFNTSFATLISIVAIIIGGATELFDFAYILTFGIIIGTYSSIFIAAPLVDIYDHIIRKARD

Specific function: Involved in protein export [H]

COG id: COG0341

COG function: function code U; Preprotein translocase subunit SecF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786610, Length=303, Percent_Identity=32.3432343234323, Blast_Score=122, Evalue=3e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645
- InterPro:   IPR005665 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 34276; Mature: 34276

Theoretical pI: Translated: 5.33; Mature: 5.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
0.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFDFIKYKYVSIGFSLVLIVFGFGYTYFVHGGFANSLDFNGGLRTVIEFDQNTDRKKLES
CCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCEEEEEEECCCCCHHHHHH
YFAENKIEAVLLLLDKEKHHYQIDIGLGSLDLILQKYKEKSGLKPTDKVELSGIDALISI
HHHHCHHHEEEEEEECCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHH
LIADFGIDKSNVLSANQVGAIVGGELSSTGITLLGLTMAIILAYISFRFQFKFALGAIVA
HHHHCCCCHHHCCCHHHCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTHDLILTVAFIGFFQIKPSVPIIAALLTLLGYSINDTIVVFDRIRENSSGNLDQTFGET
HHHHHHHHHHHHHHHEECCCCHHHHHHHHHHCCCCCCEEEEEEHHCCCCCCCCHHHHHHH
INAAINQTLGRTFNTSFATLISIVAIIIGGATELFDFAYILTFGIIIGTYSSIFIAAPLV
HHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DIYDHIIRKARD
HHHHHHHHHCCC
>Mature Secondary Structure
MFDFIKYKYVSIGFSLVLIVFGFGYTYFVHGGFANSLDFNGGLRTVIEFDQNTDRKKLES
CCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCEEEEEEECCCCCHHHHHH
YFAENKIEAVLLLLDKEKHHYQIDIGLGSLDLILQKYKEKSGLKPTDKVELSGIDALISI
HHHHCHHHEEEEEEECCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHH
LIADFGIDKSNVLSANQVGAIVGGELSSTGITLLGLTMAIILAYISFRFQFKFALGAIVA
HHHHCCCCHHHCCCHHHCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTHDLILTVAFIGFFQIKPSVPIIAALLTLLGYSINDTIVVFDRIRENSSGNLDQTFGET
HHHHHHHHHHHHHHHEECCCCHHHHHHHHHHCCCCCCEEEEEEHHCCCCCCCCHHHHHHH
INAAINQTLGRTFNTSFATLISIVAIIIGGATELFDFAYILTFGIIIGTYSSIFIAAPLV
HHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DIYDHIIRKARD
HHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA