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The map label for this gene is radC [C]

Identifier: 116328705

GI number: 116328705

Start: 2434643

End: 2435341

Strand: Reverse

Name: radC [C]

Synonym: LBL_2077

Alternate gene names: 116328705

Gene position: 2435341-2434643 (Counterclockwise)

Preceding gene: 116328706

Following gene: 116328704

Centisome position: 67.38

GC content: 44.92

Gene sequence:

>699_bases
TTGAAGTCTAGCGGAAAACTCTCTGAAAAGTTGAGTCCTTTCCCTGATCCTAGAACGCGGATCGCGTACGAAGCCGAATC
CCTAGAAGATTGGGAACTTTTGGCGGTACTTCTGGGAAGAGGGAACCGGGCTCAACCGATCGAAGAACTCAGTCGTGAAA
TTTTACATCAAAGTAAAGGCTTCGGTGGTCTGCTTCAAAAACAGGTTTCGGATCTTCGTAAAATTCCAGGGGTGGGAATT
GCTAAAGCAACTACTTTGCTTGCGGCTGTCGAATTTGCAAGACGTCTCAAATGGGAGGCTCTTAAAGGAAGACGTTATTC
TTCCGAACAACTTCTTAATTTTCTCGCTACTAGTTTGATCCCTAAAAACAGGGAATGTTTTGTACTCATCACTCTTTCTC
CGGAAGGTGCGGTTCTGCGGGCTGAGATTGTTGCAGTGGGGAGTTTGGAGGAAGTGGGAGTACAGACCAGGGATCTTCTG
AAAATCATTTTAAATGATGCGGCGTCTTCCGTCATCATTGCGCACAATCATCCTGAATCTAGTTCTAAACCCAGTAAGGA
GGATCTTTGGATCTTTGAAAATTTTGGGAGACTCCTTGACATGATAGGTTTGGAACTCTTGGACCAATGGATTTTTGGAA
TTGACGGGATCTATTCCTGTAAGAAAGGTAAGGTTCTTCAGGCTCGAGCGAAGTGTTGA

Upstream 100 bases:

>100_bases
CGGATTATCTGGAAGAGGTGTTTGAAGGGAACGTCGTTCAAAAAGGGACCTGGTTTTCAGATTCTCTTTCTGAGTTGAGT
AAAAATAATTTGAAGCGGAT

Downstream 100 bases:

>100_bases
AAAGTTTATCAATTCTTTGGATATTAGTAAAGAGGGATTACGCCTTACAATTTGCGGGAAGTTCCCTTGGAATCTCTTGG
ATGCTCGTTCAAAATCTCAG

Product: DNA repair protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 232; Mature: 232

Protein sequence:

>232_residues
MKSSGKLSEKLSPFPDPRTRIAYEAESLEDWELLAVLLGRGNRAQPIEELSREILHQSKGFGGLLQKQVSDLRKIPGVGI
AKATTLLAAVEFARRLKWEALKGRRYSSEQLLNFLATSLIPKNRECFVLITLSPEGAVLRAEIVAVGSLEEVGVQTRDLL
KIILNDAASSVIIAHNHPESSSKPSKEDLWIFENFGRLLDMIGLELLDQWIFGIDGIYSCKKGKVLQARAKC

Sequences:

>Translated_232_residues
MKSSGKLSEKLSPFPDPRTRIAYEAESLEDWELLAVLLGRGNRAQPIEELSREILHQSKGFGGLLQKQVSDLRKIPGVGI
AKATTLLAAVEFARRLKWEALKGRRYSSEQLLNFLATSLIPKNRECFVLITLSPEGAVLRAEIVAVGSLEEVGVQTRDLL
KIILNDAASSVIIAHNHPESSSKPSKEDLWIFENFGRLLDMIGLELLDQWIFGIDGIYSCKKGKVLQARAKC
>Mature_232_residues
MKSSGKLSEKLSPFPDPRTRIAYEAESLEDWELLAVLLGRGNRAQPIEELSREILHQSKGFGGLLQKQVSDLRKIPGVGI
AKATTLLAAVEFARRLKWEALKGRRYSSEQLLNFLATSLIPKNRECFVLITLSPEGAVLRAEIVAVGSLEEVGVQTRDLL
KIILNDAASSVIIAHNHPESSSKPSKEDLWIFENFGRLLDMIGLELLDQWIFGIDGIYSCKKGKVLQARAKC

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=202, Percent_Identity=30.1980198019802, Blast_Score=93, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 25766; Mature: 25766

Theoretical pI: Translated: 8.83; Mature: 8.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSSGKLSEKLSPFPDPRTRIAYEAESLEDWELLAVLLGRGNRAQPIEELSREILHQSKG
CCCCCCCHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCC
FGGLLQKQVSDLRKIPGVGIAKATTLLAAVEFARRLKWEALKGRRYSSEQLLNFLATSLI
CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC
PKNRECFVLITLSPEGAVLRAEIVAVGSLEEVGVQTRDLLKIILNDAASSVIIAHNHPES
CCCCCEEEEEEECCCCCEEEEHHHEECCHHHHCCHHHHHHHHHHHHCCCEEEEEECCCCC
SSKPSKEDLWIFENFGRLLDMIGLELLDQWIFGIDGIYSCKKGKVLQARAKC
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCEECCCCCC
>Mature Secondary Structure
MKSSGKLSEKLSPFPDPRTRIAYEAESLEDWELLAVLLGRGNRAQPIEELSREILHQSKG
CCCCCCCHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCC
FGGLLQKQVSDLRKIPGVGIAKATTLLAAVEFARRLKWEALKGRRYSSEQLLNFLATSLI
CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC
PKNRECFVLITLSPEGAVLRAEIVAVGSLEEVGVQTRDLLKIILNDAASSVIIAHNHPES
CCCCCEEEEEEECCCCCEEEEHHHEECCHHHHCCHHHHHHHHHHHHCCCEEEEEECCCCC
SSKPSKEDLWIFENFGRLLDMIGLELLDQWIFGIDGIYSCKKGKVLQARAKC
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA