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The map label for this gene is cph2 [H]

Identifier: 116328538

GI number: 116328538

Start: 2207180

End: 2208172

Strand: Reverse

Name: cph2 [H]

Synonym: LBL_1891

Alternate gene names: 116328538

Gene position: 2208172-2207180 (Counterclockwise)

Preceding gene: 116328548

Following gene: 116328537

Centisome position: 61.09

GC content: 44.01

Gene sequence:

>993_bases
ATGAATTCCATTCTTATTTTAGACGACGCACAAGAGAATTGTATGTTGATGCAAGGTATCTTGAGGAAGTCGGGATACAA
GAATACGTATACGAGTCAATCTCCGGAGGAAGTTATCGACTGGTTGAATTTAAAAAATCAGGATCCTCCTCAAAAAGAAT
GTTCTTTGATACTTTTGGACATTCTTCTCCCCGGAGTTACGGGATTTGAGATTCTCGAATTGATCCGCGAGAAGAAGGAG
TTAAAGGATATCCCGGTTATTATGATTACCGCATTGAAAGAGTCGAATGTCTTGCAAAAAGCGTTTGATTCGGGCGCCAT
CGATTACGTCATAAAACCGTTCGATGCGACCGAACTTTTGGCGCGGGTTCGTTCCGCCCTTCGACTTTTCGAGGAAATGA
CTCGAAGAAAAGAAAGGGAAAAAGAGTTGGAAAAACTTACCGATCAGCTTCAAGAAGTGAATTCCTATCTCGTTGCGATT
TCGAGGACGGATTCCCTTACGGGACTTTATAATCGGCGGTACTTCTACGAGATTTTGACGACGGAATGGAAACGATGTTG
GAGAACCGGCGCCGGTATTGCTCTCATCATGTTGGATATCGATCATTTTAAACTTTATAACGATACCTACGGACATCAAG
GTGGAGATCAATGTTTGAAACAAGTTGCACGTGCAATTAGAGACTGTGCTAGAAGGGCGGGGGACGTGGCTGCAAGATAC
GGAGGAGAGGAATTTGCGGTCATTCTTCCGGAGACAAACGAATCGAATGCGGTCGTTGTAAGTCGGAATATTTTGGAAAA
CGTGGAAAAGATGGCGATTCCACATTCGGCTTCGAAGACGAATTCGATTGTAACGGTCAGTATCGGTATGGCTACTTTAA
GTCCGAGTCCGGAAAACTCCATCACCGAACTGATCGAAAGAGCGGACAAGGCGCTTTATTTAGCTAAAGAAGAAGGAAGA
AATTGTCTTCGATTTTACCCTCAGGGCGATTGA

Upstream 100 bases:

>100_bases
AGTTTTTAAAAATCGTTTGATTTCATTGGCAACTAGGTAAAGTTTTGTATTTCTTTCCTAGGTTGGTTCGTTGCTTTGAA
AACTGGGGAGAACATTCGTG

Downstream 100 bases:

>100_bases
AATATTTTTTCGAATCGGTTTCAAAAATAATTTAGGACTGAATTCAAAATTGATTGAGAACGAATTTCGACGCGAAAAAA
ACTCCAAAAGATCAATTCGG

Product: GGDEF domain-containing protein

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 330; Mature: 330

Protein sequence:

>330_residues
MNSILILDDAQENCMLMQGILRKSGYKNTYTSQSPEEVIDWLNLKNQDPPQKECSLILLDILLPGVTGFEILELIREKKE
LKDIPVIMITALKESNVLQKAFDSGAIDYVIKPFDATELLARVRSALRLFEEMTRRKEREKELEKLTDQLQEVNSYLVAI
SRTDSLTGLYNRRYFYEILTTEWKRCWRTGAGIALIMLDIDHFKLYNDTYGHQGGDQCLKQVARAIRDCARRAGDVAARY
GGEEFAVILPETNESNAVVVSRNILENVEKMAIPHSASKTNSIVTVSIGMATLSPSPENSITELIERADKALYLAKEEGR
NCLRFYPQGD

Sequences:

>Translated_330_residues
MNSILILDDAQENCMLMQGILRKSGYKNTYTSQSPEEVIDWLNLKNQDPPQKECSLILLDILLPGVTGFEILELIREKKE
LKDIPVIMITALKESNVLQKAFDSGAIDYVIKPFDATELLARVRSALRLFEEMTRRKEREKELEKLTDQLQEVNSYLVAI
SRTDSLTGLYNRRYFYEILTTEWKRCWRTGAGIALIMLDIDHFKLYNDTYGHQGGDQCLKQVARAIRDCARRAGDVAARY
GGEEFAVILPETNESNAVVVSRNILENVEKMAIPHSASKTNSIVTVSIGMATLSPSPENSITELIERADKALYLAKEEGR
NCLRFYPQGD
>Mature_330_residues
MNSILILDDAQENCMLMQGILRKSGYKNTYTSQSPEEVIDWLNLKNQDPPQKECSLILLDILLPGVTGFEILELIREKKE
LKDIPVIMITALKESNVLQKAFDSGAIDYVIKPFDATELLARVRSALRLFEEMTRRKEREKELEKLTDQLQEVNSYLVAI
SRTDSLTGLYNRRYFYEILTTEWKRCWRTGAGIALIMLDIDHFKLYNDTYGHQGGDQCLKQVARAIRDCARRAGDVAARY
GGEEFAVILPETNESNAVVVSRNILENVEKMAIPHSASKTNSIVTVSIGMATLSPSPENSITELIERADKALYLAKEEGR
NCLRFYPQGD

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG3706

COG function: function code T; Response regulator containing a CheY-like receiver domain and a GGDEF domain

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1786584, Length=173, Percent_Identity=35.8381502890173, Blast_Score=111, Evalue=7e-26,
Organism=Escherichia coli, GI145693134, Length=181, Percent_Identity=35.3591160220994, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI87081881, Length=180, Percent_Identity=37.7777777777778, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1787262, Length=164, Percent_Identity=39.0243902439024, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI87082007, Length=160, Percent_Identity=38.75, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1787816, Length=187, Percent_Identity=35.8288770053476, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1787541, Length=171, Percent_Identity=35.0877192982456, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI1787802, Length=161, Percent_Identity=35.4037267080745, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI87081977, Length=118, Percent_Identity=42.3728813559322, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1788085, Length=158, Percent_Identity=31.6455696202532, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788381, Length=166, Percent_Identity=32.5301204819277, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI87082012, Length=128, Percent_Identity=38.28125, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI87081974, Length=110, Percent_Identity=33.6363636363636, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1788394, Length=125, Percent_Identity=36.8, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1786599, Length=131, Percent_Identity=31.2977099236641, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1788956, Length=178, Percent_Identity=29.7752808988764, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1786784, Length=76, Percent_Identity=43.421052631579, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 37448; Mature: 37448

Theoretical pI: Translated: 5.07; Mature: 5.07

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSILILDDAQENCMLMQGILRKSGYKNTYTSQSPEEVIDWLNLKNQDPPQKECSLILLD
CCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHH
ILLPGVTGFEILELIREKKELKDIPVIMITALKESNVLQKAFDSGAIDYVIKPFDATELL
HHHCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEEEECCCCHHHHH
ARVRSALRLFEEMTRRKEREKELEKLTDQLQEVNSYLVAISRTDSLTGLYNRRYFYEILT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHH
TEWKRCWRTGAGIALIMLDIDHFKLYNDTYGHQGGDQCLKQVARAIRDCARRAGDVAARY
HHHHHHHHCCCCEEEEEEECCHHEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
GGEEFAVILPETNESNAVVVSRNILENVEKMAIPHSASKTNSIVTVSIGMATLSPSPENS
CCCEEEEEEECCCCCCEEEEEHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCHH
ITELIERADKALYLAKEEGRNCLRFYPQGD
HHHHHHHHHHHEEEEHHHCCCEEECCCCCC
>Mature Secondary Structure
MNSILILDDAQENCMLMQGILRKSGYKNTYTSQSPEEVIDWLNLKNQDPPQKECSLILLD
CCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHH
ILLPGVTGFEILELIREKKELKDIPVIMITALKESNVLQKAFDSGAIDYVIKPFDATELL
HHHCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEEEECCCCHHHHH
ARVRSALRLFEEMTRRKEREKELEKLTDQLQEVNSYLVAISRTDSLTGLYNRRYFYEILT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHH
TEWKRCWRTGAGIALIMLDIDHFKLYNDTYGHQGGDQCLKQVARAIRDCARRAGDVAARY
HHHHHHHHCCCCEEEEEEECCHHEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
GGEEFAVILPETNESNAVVVSRNILENVEKMAIPHSASKTNSIVTVSIGMATLSPSPENS
CCCEEEEEEECCCCCCEEEEEHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCHH
ITELIERADKALYLAKEEGRNCLRFYPQGD
HHHHHHHHHHHEEEEHHHCCCEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]