Click here to switch to the map view.

The map label for this gene is psd [H]

Identifier: 116328502

GI number: 116328502

Start: 2154037

End: 2156268

Strand: Reverse

Name: psd [H]

Synonym: LBL_1850

Alternate gene names: 116328502

Gene position: 2156268-2154037 (Counterclockwise)

Preceding gene: 116328504

Following gene: 116328501

Centisome position: 59.66

GC content: 42.38

Gene sequence:

>2232_bases
ATGTTGCAATTTCATTTTTTTCAGTTTTTCAATTGGGACTTAGTCAGATTCTTTTTCTATTTCTTAAGTTTTATCGGGAT
TTTCCTAACGTTTAGACTTCGTTTCCCACAACTCCGGTTCTTCTTTCTCGCAGTAAAAATTTTCTCGGGTAATATGGATC
ATAAGGGTTCTCGTGGAAGGTTGGTTCACTCACAAGCGTTCTTTTCCGGAACCGCATCTTCGCTCGTTCCGGGTTCGGTG
ATCGGCTCGGCTTTGGCTCTGATGATCGGGGGACCGGGAGTTTTATTTTGGATTTGGATTTCTTCCTTTTTCGTTATGCC
TCTTCGATTTGTCTCTTCCACGCTCGCGATTCGCTTTAGAACCAAAACTGCATCCGGAAGATATCTTTCCGGTCCGATGT
ATTTCATTGAAAGGGCGTTGAAAGCGAAATGGCTCGCTATGAGTTTTGCGATTGTAGGGCTTTTGACTGTACTTGTGATG
GGTGGAGCGGTACCGATGTTGTATGTGACTCATATCACAAATCGAGCTTTCGAGATAACGGGAATGACGGTTCCCTTTTT
GTTGTCCGTGATTCTCGTATTTATCGTATTAGGCGGGGTGAGAAGAGTCGGAAAAGTTTCGGCGTATCTGGCTCCGATCG
GAATTCTTTTGTTTTTTTCCGGATGTTTCTTTTTGTTTAAAAATTCCCTGATGAACTTCGAGGATTTTCTTCGTTTGTCG
TTTCAAGAAGCGTTTCAACCTACGGCTGCCGTTACGGGAGGAAGTTTTGTTATAGCTAGAATTTTCGGTATGGCTTCCGG
AATGTTTTTCGTTTCCACGGAAACCGGGATCGGTAAAAGCGCCGGATTATCCGGAGTTGTAAGAACGGATTATCCAGCGA
AACAAGGTCTCGTGAGTATGCTTGCTACCTTTTTCGAAGGTTTTATCATTTCCACACTCGTGATCTACGTGCTTTCTTCT
TATGGCGCATTTAGGGCGGAAGAGCAAGTTGTATTCTTAAACGCTTTGTTTCAAGGACATACCGGTCCTGTAAAACTCGC
CTTTTTCGGATCTTTTTTATCATTCGGGGTTCTTTCAATCACTGGTTGGTTTTACACGGGAGAGCAGAATGCGCTTTATA
TGTTCGGGGAAAGGTTTGCGAACTTTTTTAGAATGCTCTTTTTGGTTACGATTCTTTTGGCAGCTTATCTTTATGTGAAG
AATGGAGACTGGATTCTTTTCGAAGTTTTCGGTTTGGGGTATTCTCTCTCAATCGTGACCGCCGTTCCGGTTTTAATTTC
TTTGGTTTTGCTTGAAAAAATTGCGAGAATGGAGTTAAAACGATTTTTAGCGGAAAGCGGAGCGAGATACGAAGTTTTAA
AGGATTTTTATCTTTTAATATTGTCCATCGTTCCTAAGAATTTGCTTTCTCTCTTATTCGGACTTCTGGCTTCTTTCAGG
CTTCCACGTTTTCTTTTGATCCCGATTCTGAAGGCATTTGCAAGAGCGTATAAAATCAACGTTGATGAGGCGGAATTCGA
AATCCAAGAATATAATTCTCTCAATGCATTTTTCACAAGAGCCTTAAAGGCGGAAGCCAGAATCATCGATTCCACAGATA
ATGAAATGGTATCTCCCGTGGATGCAAGGATTACCGGTTATGGGGATATCAATCAAAGAATTATCATTCAAGCCAAGGGG
GTCGATTATAACCTGAAGGAGCTTTTAGGGGGAGGCGGGTCGAAGTATATAGACGATTTTACGAACGGAAAATACATCAC
ATTTTATCTTTCACCCCAGGACTATCATAGGATTCATTCTCCCGCCTACGGAAAAATTTTGGGTTATTACTACGAACCCG
GAAAGTTATTTCCGGTAAATGAGCTTGCGGTTTTTGGCATTCGAGGACTTTTTCCGAAGAACGAAAGATTGATCACCTAT
CTACAGACTGAATACGGAAAGGTGGCCGTCATCAAGGTGGGTGCTTCGAATGTAGGAAGAATTCGAGTGACTTACGACAA
TAAGATCGTGACGAACAGTCTCATTCGAACTGCGAGAACCGTAGAATATAAGGAAGTTTCGATCATGATTGACAAGGGAG
CCGAACTAGGACGGTTCGAGATGGGATCAACGGTGATTCTTCTCATGGAAAAAGATACGTTTCAGTTCGATGCACTGACC
ATGAATGAGAAAATTACTTATGGGACCACGATCGGAAGATTCGGAGGGAAAAAGTGTAGACTTCCTAGGTAG

Upstream 100 bases:

>100_bases
TCAAGAAGATCCTGAAAATTTTGCTGGTAGCCCTCATTATTACAGGATTTCTAGCAAGGACTTCCATACAAAGCGGATTT
TCTTCCTATCGGGTAGGATC

Downstream 100 bases:

>100_bases
TGGGGTCTTATTTCAAAGACTTCCATTCGCTTTTGGAAAATCACAAGTGAAAATCAAAATGAGGATAGTGTTACAATAGG
GTTGTAAGGCGAAGTCCGGA

Product: bifunctional phosphatidylserine decarboxylase and sodium/alanine symporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 743; Mature: 743

Protein sequence:

>743_residues
MLQFHFFQFFNWDLVRFFFYFLSFIGIFLTFRLRFPQLRFFFLAVKIFSGNMDHKGSRGRLVHSQAFFSGTASSLVPGSV
IGSALALMIGGPGVLFWIWISSFFVMPLRFVSSTLAIRFRTKTASGRYLSGPMYFIERALKAKWLAMSFAIVGLLTVLVM
GGAVPMLYVTHITNRAFEITGMTVPFLLSVILVFIVLGGVRRVGKVSAYLAPIGILLFFSGCFFLFKNSLMNFEDFLRLS
FQEAFQPTAAVTGGSFVIARIFGMASGMFFVSTETGIGKSAGLSGVVRTDYPAKQGLVSMLATFFEGFIISTLVIYVLSS
YGAFRAEEQVVFLNALFQGHTGPVKLAFFGSFLSFGVLSITGWFYTGEQNALYMFGERFANFFRMLFLVTILLAAYLYVK
NGDWILFEVFGLGYSLSIVTAVPVLISLVLLEKIARMELKRFLAESGARYEVLKDFYLLILSIVPKNLLSLLFGLLASFR
LPRFLLIPILKAFARAYKINVDEAEFEIQEYNSLNAFFTRALKAEARIIDSTDNEMVSPVDARITGYGDINQRIIIQAKG
VDYNLKELLGGGGSKYIDDFTNGKYITFYLSPQDYHRIHSPAYGKILGYYYEPGKLFPVNELAVFGIRGLFPKNERLITY
LQTEYGKVAVIKVGASNVGRIRVTYDNKIVTNSLIRTARTVEYKEVSIMIDKGAELGRFEMGSTVILLMEKDTFQFDALT
MNEKITYGTTIGRFGGKKCRLPR

Sequences:

>Translated_743_residues
MLQFHFFQFFNWDLVRFFFYFLSFIGIFLTFRLRFPQLRFFFLAVKIFSGNMDHKGSRGRLVHSQAFFSGTASSLVPGSV
IGSALALMIGGPGVLFWIWISSFFVMPLRFVSSTLAIRFRTKTASGRYLSGPMYFIERALKAKWLAMSFAIVGLLTVLVM
GGAVPMLYVTHITNRAFEITGMTVPFLLSVILVFIVLGGVRRVGKVSAYLAPIGILLFFSGCFFLFKNSLMNFEDFLRLS
FQEAFQPTAAVTGGSFVIARIFGMASGMFFVSTETGIGKSAGLSGVVRTDYPAKQGLVSMLATFFEGFIISTLVIYVLSS
YGAFRAEEQVVFLNALFQGHTGPVKLAFFGSFLSFGVLSITGWFYTGEQNALYMFGERFANFFRMLFLVTILLAAYLYVK
NGDWILFEVFGLGYSLSIVTAVPVLISLVLLEKIARMELKRFLAESGARYEVLKDFYLLILSIVPKNLLSLLFGLLASFR
LPRFLLIPILKAFARAYKINVDEAEFEIQEYNSLNAFFTRALKAEARIIDSTDNEMVSPVDARITGYGDINQRIIIQAKG
VDYNLKELLGGGGSKYIDDFTNGKYITFYLSPQDYHRIHSPAYGKILGYYYEPGKLFPVNELAVFGIRGLFPKNERLITY
LQTEYGKVAVIKVGASNVGRIRVTYDNKIVTNSLIRTARTVEYKEVSIMIDKGAELGRFEMGSTVILLMEKDTFQFDALT
MNEKITYGTTIGRFGGKKCRLPR
>Mature_743_residues
MLQFHFFQFFNWDLVRFFFYFLSFIGIFLTFRLRFPQLRFFFLAVKIFSGNMDHKGSRGRLVHSQAFFSGTASSLVPGSV
IGSALALMIGGPGVLFWIWISSFFVMPLRFVSSTLAIRFRTKTASGRYLSGPMYFIERALKAKWLAMSFAIVGLLTVLVM
GGAVPMLYVTHITNRAFEITGMTVPFLLSVILVFIVLGGVRRVGKVSAYLAPIGILLFFSGCFFLFKNSLMNFEDFLRLS
FQEAFQPTAAVTGGSFVIARIFGMASGMFFVSTETGIGKSAGLSGVVRTDYPAKQGLVSMLATFFEGFIISTLVIYVLSS
YGAFRAEEQVVFLNALFQGHTGPVKLAFFGSFLSFGVLSITGWFYTGEQNALYMFGERFANFFRMLFLVTILLAAYLYVK
NGDWILFEVFGLGYSLSIVTAVPVLISLVLLEKIARMELKRFLAESGARYEVLKDFYLLILSIVPKNLLSLLFGLLASFR
LPRFLLIPILKAFARAYKINVDEAEFEIQEYNSLNAFFTRALKAEARIIDSTDNEMVSPVDARITGYGDINQRIIIQAKG
VDYNLKELLGGGGSKYIDDFTNGKYITFYLSPQDYHRIHSPAYGKILGYYYEPGKLFPVNELAVFGIRGLFPKNERLITY
LQTEYGKVAVIKVGASNVGRIRVTYDNKIVTNSLIRTARTVEYKEVSIMIDKGAELGRFEMGSTVILLMEKDTFQFDALT
MNEKITYGTTIGRFGGKKCRLPR

Specific function: Unknown

COG id: COG1115

COG function: function code E; Na+/alanine symporter

Gene ontology:

Cell location: Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 1 subfamily [H]

Homologues:

Organism=Homo sapiens, GI13489112, Length=297, Percent_Identity=31.3131313131313, Blast_Score=135, Evalue=1e-31,
Organism=Escherichia coli, GI1790604, Length=263, Percent_Identity=38.7832699619772, Blast_Score=160, Evalue=4e-40,
Organism=Escherichia coli, GI1786188, Length=318, Percent_Identity=23.5849056603774, Blast_Score=84, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI71980840, Length=272, Percent_Identity=29.7794117647059, Blast_Score=114, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI71980843, Length=272, Percent_Identity=29.7794117647059, Blast_Score=111, Evalue=1e-24,
Organism=Saccharomyces cerevisiae, GI6321609, Length=221, Percent_Identity=31.2217194570136, Blast_Score=94, Evalue=7e-20,
Organism=Saccharomyces cerevisiae, GI6324160, Length=163, Percent_Identity=34.3558282208589, Blast_Score=78, Evalue=5e-15,
Organism=Drosophila melanogaster, GI24649526, Length=333, Percent_Identity=30.03003003003, Blast_Score=135, Evalue=8e-32,
Organism=Drosophila melanogaster, GI24649528, Length=333, Percent_Identity=30.03003003003, Blast_Score=135, Evalue=8e-32,
Organism=Drosophila melanogaster, GI24649524, Length=333, Percent_Identity=30.03003003003, Blast_Score=135, Evalue=8e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003817
- InterPro:   IPR005221 [H]

Pfam domain/function: PF02666 PS_Dcarbxylase [H]

EC number: =4.1.1.65 [H]

Molecular weight: Translated: 83496; Mature: 83496

Theoretical pI: Translated: 10.08; Mature: 10.08

Prosite motif: PS00079 MULTICOPPER_OXIDASE1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQFHFFQFFNWDLVRFFFYFLSFIGIFLTFRLRFPQLRFFFLAVKIFSGNMDHKGSRGR
CCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCC
LVHSQAFFSGTASSLVPGSVIGSALALMIGGPGVLFWIWISSFFVMPLRFVSSTLAIRFR
EEEHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHEEEEEEE
TKTASGRYLSGPMYFIERALKAKWLAMSFAIVGLLTVLVMGGAVPMLYVTHITNRAFEIT
EECCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEEE
GMTVPFLLSVILVFIVLGGVRRVGKVSAYLAPIGILLFFSGCFFLFKNSLMNFEDFLRLS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
FQEAFQPTAAVTGGSFVIARIFGMASGMFFVSTETGIGKSAGLSGVVRTDYPAKQGLVSM
HHHHCCCCCCCCCCHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCEEECCCCHHHHHHHH
LATFFEGFIISTLVIYVLSSYGAFRAEEQVVFLNALFQGHTGPVKLAFFGSFLSFGVLSI
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEHHHCCCCCCEEHHHHHHHHHHHHHHH
TGWFYTGEQNALYMFGERFANFFRMLFLVTILLAAYLYVKNGDWILFEVFGLGYSLSIVT
EEEEEECCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHEEECCCEEEEEEECCCCHHHHHH
AVPVLISLVLLEKIARMELKRFLAESGARYEVLKDFYLLILSIVPKNLLSLLFGLLASFR
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
LPRFLLIPILKAFARAYKINVDEAEFEIQEYNSLNAFFTRALKAEARIIDSTDNEMVSPV
CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHEECCCCCCCCCCC
DARITGYGDINQRIIIQAKGVDYNLKELLGGGGSKYIDDFTNGKYITFYLSPQDYHRIHS
CCEEECCCCCCCEEEEEECCCCCCHHHHHCCCCCCHHHHCCCCCEEEEEECCCHHHHHCC
PAYGKILGYYYEPGKLFPVNELAVFGIRGLFPKNERLITYLQTEYGKVAVIKVGASNVGR
CCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEEECCCCCCE
IRVTYDNKIVTNSLIRTARTVEYKEVSIMIDKGAELGRFEMGSTVILLMEKDTFQFDALT
EEEEECCCHHHHHHHHHHHCCEEEEEEEEEECCCCCCCEECCCEEEEEEECCCCEEEEEE
MNEKITYGTTIGRFGGKKCRLPR
ECCEEEECCCHHCCCCCCCCCCC
>Mature Secondary Structure
MLQFHFFQFFNWDLVRFFFYFLSFIGIFLTFRLRFPQLRFFFLAVKIFSGNMDHKGSRGR
CCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCC
LVHSQAFFSGTASSLVPGSVIGSALALMIGGPGVLFWIWISSFFVMPLRFVSSTLAIRFR
EEEHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHEEEEEEE
TKTASGRYLSGPMYFIERALKAKWLAMSFAIVGLLTVLVMGGAVPMLYVTHITNRAFEIT
EECCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEEE
GMTVPFLLSVILVFIVLGGVRRVGKVSAYLAPIGILLFFSGCFFLFKNSLMNFEDFLRLS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
FQEAFQPTAAVTGGSFVIARIFGMASGMFFVSTETGIGKSAGLSGVVRTDYPAKQGLVSM
HHHHCCCCCCCCCCHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCEEECCCCHHHHHHHH
LATFFEGFIISTLVIYVLSSYGAFRAEEQVVFLNALFQGHTGPVKLAFFGSFLSFGVLSI
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEHHHCCCCCCEEHHHHHHHHHHHHHHH
TGWFYTGEQNALYMFGERFANFFRMLFLVTILLAAYLYVKNGDWILFEVFGLGYSLSIVT
EEEEEECCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHEEECCCEEEEEEECCCCHHHHHH
AVPVLISLVLLEKIARMELKRFLAESGARYEVLKDFYLLILSIVPKNLLSLLFGLLASFR
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
LPRFLLIPILKAFARAYKINVDEAEFEIQEYNSLNAFFTRALKAEARIIDSTDNEMVSPV
CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHEECCCCCCCCCCC
DARITGYGDINQRIIIQAKGVDYNLKELLGGGGSKYIDDFTNGKYITFYLSPQDYHRIHS
CCEEECCCCCCCEEEEEECCCCCCHHHHHCCCCCCHHHHCCCCCEEEEEECCCHHHHHCC
PAYGKILGYYYEPGKLFPVNELAVFGIRGLFPKNERLITYLQTEYGKVAVIKVGASNVGR
CCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEEECCCCCCE
IRVTYDNKIVTNSLIRTARTVEYKEVSIMIDKGAELGRFEMGSTVILLMEKDTFQFDALT
EEEEECCCHHHHHHHHHHHCCEEEEEEEEEECCCCCCCEECCCEEEEEEECCCCEEEEEE
MNEKITYGTTIGRFGGKKCRLPR
ECCEEEECCCHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA