Click here to switch to the map view.

The map label for this gene is rnhA

Identifier: 116328421

GI number: 116328421

Start: 2053968

End: 2054357

Strand: Reverse

Name: rnhA

Synonym: LBL_1762

Alternate gene names: NA

Gene position: 2054357-2053968 (Counterclockwise)

Preceding gene: 116328422

Following gene: 116328420

Centisome position: 56.84

GC content: 44.36

Gene sequence:

>390_bases
TTGATCTCCATTTTTTGCGATGGGGCATCCAAGGGAAATCCGGGACCTTCCTCGATCGGAGTCGTGGCGTATAAGGGCGA
CAAGGAAGAATTCAGAATCTCCGAACGTATCGGAGAAACCACCAACAACGTGGCGGAATGGGCTTCTCTCAAAAAGGGTT
TGGAGGAGTGTATTCGAAGGAAATTCGATACAATTCATGCGTATATGGACTCGGAGCTTGTGGTCAAGCAGGTCAGCGGA
AAGTATAAGGTAAAACATCCCAATCTTTTGGAATATAAAAAGGAAGTGGACAAGCTCCTTTCTTCCTTACAGAATTTTCA
AATCACCCATGTTCCTCGTGAAAAAAATTCGGTCGCAGATAAGCTCGCAAACGAAGCCTTTCAAAAATAA

Upstream 100 bases:

>100_bases
TTCTAAGTGGAATTGTAAAAGTCGGCTTATTACTTATCTATCTGATTGTCTTTAAGCCGATTCGGTTTGTGATTGGCCTT
TTTCTCAGGGAAAAAAAATC

Downstream 100 bases:

>100_bases
GAGCCGACTATTTTCTCTTTTGTGGAGAATTTCGTTCTACGTCTTTTTGTTTTATACGGCGTCGAATTGCGGTCGATCTT
TGGAGGACAAGTTGGTTGTT

Product: ribonuclease HI

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 129; Mature: 129

Protein sequence:

>129_residues
MISIFCDGASKGNPGPSSIGVVAYKGDKEEFRISERIGETTNNVAEWASLKKGLEECIRRKFDTIHAYMDSELVVKQVSG
KYKVKHPNLLEYKKEVDKLLSSLQNFQITHVPREKNSVADKLANEAFQK

Sequences:

>Translated_129_residues
MISIFCDGASKGNPGPSSIGVVAYKGDKEEFRISERIGETTNNVAEWASLKKGLEECIRRKFDTIHAYMDSELVVKQVSG
KYKVKHPNLLEYKKEVDKLLSSLQNFQITHVPREKNSVADKLANEAFQK
>Mature_129_residues
MISIFCDGASKGNPGPSSIGVVAYKGDKEEFRISERIGETTNNVAEWASLKKGLEECIRRKFDTIHAYMDSELVVKQVSG
KYKVKHPNLLEYKKEVDKLLSSLQNFQITHVPREKNSVADKLANEAFQK

Specific function: Unknown

COG id: COG0328

COG function: function code L; Ribonuclease HI

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RNase H domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013078
- InterPro:   IPR012337
- InterPro:   IPR014636
- InterPro:   IPR002156 [H]

Pfam domain/function: PF00300 PGAM; PF00075 RnaseH [H]

EC number: NA

Molecular weight: Translated: 14547; Mature: 14547

Theoretical pI: Translated: 9.09; Mature: 9.09

Prosite motif: PS50879 RNASE_H

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISIFCDGASKGNPGPSSIGVVAYKGDKEEFRISERIGETTNNVAEWASLKKGLEECIRR
CEEEEECCCCCCCCCCCCEEEEEEECCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
KFDTIHAYMDSELVVKQVSGKYKVKHPNLLEYKKEVDKLLSSLQNFQITHVPREKNSVAD
HHHHHHHHHCHHHHHHHHCCCEECCCCCHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHH
KLANEAFQK
HHHHHHHCC
>Mature Secondary Structure
MISIFCDGASKGNPGPSSIGVVAYKGDKEEFRISERIGETTNNVAEWASLKKGLEECIRR
CEEEEECCCCCCCCCCCCEEEEEEECCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
KFDTIHAYMDSELVVKQVSGKYKVKHPNLLEYKKEVDKLLSSLQNFQITHVPREKNSVAD
HHHHHHHHHCHHHHHHHHCCCEECCCCCHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHH
KLANEAFQK
HHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]