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The map label for this gene is xerD [H]

Identifier: 116328373

GI number: 116328373

Start: 1990202

End: 1991098

Strand: Reverse

Name: xerD [H]

Synonym: LBL_1710

Alternate gene names: 116328373

Gene position: 1991098-1990202 (Counterclockwise)

Preceding gene: 116328376

Following gene: 116328372

Centisome position: 55.09

GC content: 38.68

Gene sequence:

>897_bases
GTGACATCTTCACATAACAATCTACTTCAAAATTTTCAGGAATATCTCTCCGTAGAAAAGGGACTAAGCGACAACTCCAT
CTACTCTTACGGATACGATTTGAACAAGTTTAAGAACTTTCTGGAAAAGGAGCATATAGATTTCCTAAAGGTCCAGGCGA
ATGATATTATGCGTTTTTTGAATGAGGAAAGGGATCGCAAGATCAGTTCGAAAACGATAGCAAGAGAAGTGGTTGCAATT
CGACAGTTTTACAAGTTTTTAAAGGACGAAAAAAAACTCGACACCAATCCGACCGAGAAGATCGAAACTCCCGAGGTAAT
GCGAAATATTCCGGATTACCTGACACAGGACGAGATCGAGGAACTGTTCGCGAGTATCCGAGAGGATAACCTTTACGAAC
TCAGAGACAAATGTATTTTTGAATTATTGTATTCTTCGGGGCTTAGGATTTCGGAGGCTTGTAATTTAAGGTTAAGCGAT
ATGGATCTGGAAGGAATGATTCTGACCGTGGAAGGAAAGGGAGGACGTCAAAGGTTGGTTCCCTTCGGAGAAAAATCCTT
GGACATAATGAATCGTTATCTGAAACAGAGTCGGCCTTTTATTCTCAAAGCGAGAAACTGCGAATATCTTTTCGTTTCTA
AAAAAGGATCTTATATCAATCGTAAATCCGTTTGGAGACTTTTAAACCATTATATAAAAAGGACGTCTATTTCTAAAAAA
GTGACTCCGCATACTCTCAGACATTCCTTTGCGACTCATTTGTTGGAAAATCATGCGGATTTGAAATCGGTTCAGGAGCT
TTTGGGCCACATTGATATTTCCACGACGCAAATTTATACTCACATGGCAAATAAAACTTTGAAAGAAGTTCATAAAAAAT
TTCATCCTAGAGGATAA

Upstream 100 bases:

>100_bases
CAATAAACCCATTAGGCAACATAAAAAAGTTTAATTCTCCTGAGGGGAAACGTCCGAAGGATTTAATACTTGTTAAACAT
TTTAGACGGGACTAAAAACA

Downstream 100 bases:

>100_bases
AAGTCGGATTTTAAAAGAAAGAATTTTCTGTGAGTTGCTCATTCCTTGAGTTTTTCAATTTGAGAGAGTGATCGGAATAA
GAACGATCTAACAAGGGTTT

Product: site-specific recombinase XerD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 297

Protein sequence:

>298_residues
MTSSHNNLLQNFQEYLSVEKGLSDNSIYSYGYDLNKFKNFLEKEHIDFLKVQANDIMRFLNEERDRKISSKTIAREVVAI
RQFYKFLKDEKKLDTNPTEKIETPEVMRNIPDYLTQDEIEELFASIREDNLYELRDKCIFELLYSSGLRISEACNLRLSD
MDLEGMILTVEGKGGRQRLVPFGEKSLDIMNRYLKQSRPFILKARNCEYLFVSKKGSYINRKSVWRLLNHYIKRTSISKK
VTPHTLRHSFATHLLENHADLKSVQELLGHIDISTTQIYTHMANKTLKEVHKKFHPRG

Sequences:

>Translated_298_residues
MTSSHNNLLQNFQEYLSVEKGLSDNSIYSYGYDLNKFKNFLEKEHIDFLKVQANDIMRFLNEERDRKISSKTIAREVVAI
RQFYKFLKDEKKLDTNPTEKIETPEVMRNIPDYLTQDEIEELFASIREDNLYELRDKCIFELLYSSGLRISEACNLRLSD
MDLEGMILTVEGKGGRQRLVPFGEKSLDIMNRYLKQSRPFILKARNCEYLFVSKKGSYINRKSVWRLLNHYIKRTSISKK
VTPHTLRHSFATHLLENHADLKSVQELLGHIDISTTQIYTHMANKTLKEVHKKFHPRG
>Mature_297_residues
TSSHNNLLQNFQEYLSVEKGLSDNSIYSYGYDLNKFKNFLEKEHIDFLKVQANDIMRFLNEERDRKISSKTIAREVVAIR
QFYKFLKDEKKLDTNPTEKIETPEVMRNIPDYLTQDEIEELFASIREDNLYELRDKCIFELLYSSGLRISEACNLRLSDM
DLEGMILTVEGKGGRQRLVPFGEKSLDIMNRYLKQSRPFILKARNCEYLFVSKKGSYINRKSVWRLLNHYIKRTSISKKV
TPHTLRHSFATHLLENHADLKSVQELLGHIDISTTQIYTHMANKTLKEVHKKFHPRG

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=291, Percent_Identity=36.0824742268041, Blast_Score=221, Evalue=3e-59,
Organism=Escherichia coli, GI1790244, Length=299, Percent_Identity=31.438127090301, Blast_Score=169, Evalue=3e-43,
Organism=Escherichia coli, GI1790767, Length=172, Percent_Identity=29.0697674418605, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1790768, Length=169, Percent_Identity=30.1775147928994, Blast_Score=75, Evalue=7e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011932 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 35105; Mature: 34974

Theoretical pI: Translated: 9.43; Mature: 9.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSSHNNLLQNFQEYLSVEKGLSDNSIYSYGYDLNKFKNFLEKEHIDFLKVQANDIMRFL
CCCCHHHHHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
NEERDRKISSKTIAREVVAIRQFYKFLKDEKKLDTNPTEKIETPEVMRNIPDYLTQDEIE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCHHHCCHHHHH
ELFASIREDNLYELRDKCIFELLYSSGLRISEACNLRLSDMDLEGMILTVEGKGGRQRLV
HHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHCCCEEECCCCCEEEEEEECCCCCCCCC
PFGEKSLDIMNRYLKQSRPFILKARNCEYLFVSKKGSYINRKSVWRLLNHYIKRTSISKK
CCCCHHHHHHHHHHHHCCCEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCC
VTPHTLRHSFATHLLENHADLKSVQELLGHIDISTTQIYTHMANKTLKEVHKKFHPRG
CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TSSHNNLLQNFQEYLSVEKGLSDNSIYSYGYDLNKFKNFLEKEHIDFLKVQANDIMRFL
CCCHHHHHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
NEERDRKISSKTIAREVVAIRQFYKFLKDEKKLDTNPTEKIETPEVMRNIPDYLTQDEIE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCHHHCCHHHHH
ELFASIREDNLYELRDKCIFELLYSSGLRISEACNLRLSDMDLEGMILTVEGKGGRQRLV
HHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHCCCEEECCCCCEEEEEEECCCCCCCCC
PFGEKSLDIMNRYLKQSRPFILKARNCEYLFVSKKGSYINRKSVWRLLNHYIKRTSISKK
CCCCHHHHHHHHHHHHCCCEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCC
VTPHTLRHSFATHLLENHADLKSVQELLGHIDISTTQIYTHMANKTLKEVHKKFHPRG
CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA