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The map label for this gene is rpe [H]

Identifier: 116328324

GI number: 116328324

Start: 1939669

End: 1940316

Strand: Reverse

Name: rpe [H]

Synonym: LBL_1661

Alternate gene names: 116328324

Gene position: 1940316-1939669 (Counterclockwise)

Preceding gene: 116328325

Following gene: 116328323

Centisome position: 53.68

GC content: 42.9

Gene sequence:

>648_bases
TTGAAAATATCCGCATCCATTCTAGCGACAAAGCTGACTGAACTAGGAGAAACCGTTCCTCACTACGATCCGAGTGCGAT
CGACTTGATGCACATGGATGTGATGGACGGAAACTTTGTTCCTCAGATCAGTTTCGGAGAAGCGCTCAGTAAAGAAGTTA
AGGCCCTTACAACCATTCCATTGGACGTACATCTGATGGTTTCCAAACCGGAAAATCACGTCCCTAAATATTATGAACTG
AATCCTTATTGTATCACATTTCACATTGAAACCACTGACTTCCCAGTGCGACTTGCTCAGGAAATCAAAAGTTATGGAAC
AAAAGTGGGAGTTTCACTAAACCCGGGGACTTCGGTTTCCACTTTAGAAAATGTTCTTCCTTATGTGGACCTGGTACTTT
TGATGACGGTCGAACCGGGTTTTTACGGACAAAAATTCATCGTAAATGGAATGGAAAAAATCCGAAAAGCGAAAGAGTTG
ATCCATACTAGACCGATCGAACTCGAGGTGGACGGAGGGGTCAACGATACCAATATCCAGGAGTTAAAGAAGAATGGAGT
GGATATTGTAGTCGTCGGAGCTGGTCTTTATAAGACAGGAAAACCTATGGATAATGCGAGAAACCTAAAATCCTTAGCAA
AGCAGTAG

Upstream 100 bases:

>100_bases
AAAAATTTCAGACCGTATTTTATCGGAAAGAAAACGTAAAGCTGACTCTCTTGGATACGTCTGATTCAAAAGTAAAATCC
AAATCCTACGAGAGCGAGCT

Downstream 100 bases:

>100_bases
CGATTCATTCAATCGGAAATTTTTCAACCTCTAAAGAAATCTTTTGAAAGTTTTACGTCTCTTGCATTTCTATTCCGGAT
TGTATTTGAGTTCGTTTCAT

Product: Pentose-5-phosphate-3-epimerase

Products: NA

Alternate protein names: Pentose-5-phosphate 3-epimerase; PPE; R5P3E [H]

Number of amino acids: Translated: 215; Mature: 215

Protein sequence:

>215_residues
MKISASILATKLTELGETVPHYDPSAIDLMHMDVMDGNFVPQISFGEALSKEVKALTTIPLDVHLMVSKPENHVPKYYEL
NPYCITFHIETTDFPVRLAQEIKSYGTKVGVSLNPGTSVSTLENVLPYVDLVLLMTVEPGFYGQKFIVNGMEKIRKAKEL
IHTRPIELEVDGGVNDTNIQELKKNGVDIVVVGAGLYKTGKPMDNARNLKSLAKQ

Sequences:

>Translated_215_residues
MKISASILATKLTELGETVPHYDPSAIDLMHMDVMDGNFVPQISFGEALSKEVKALTTIPLDVHLMVSKPENHVPKYYEL
NPYCITFHIETTDFPVRLAQEIKSYGTKVGVSLNPGTSVSTLENVLPYVDLVLLMTVEPGFYGQKFIVNGMEKIRKAKEL
IHTRPIELEVDGGVNDTNIQELKKNGVDIVVVGAGLYKTGKPMDNARNLKSLAKQ
>Mature_215_residues
MKISASILATKLTELGETVPHYDPSAIDLMHMDVMDGNFVPQISFGEALSKEVKALTTIPLDVHLMVSKPENHVPKYYEL
NPYCITFHIETTDFPVRLAQEIKSYGTKVGVSLNPGTSVSTLENVLPYVDLVLLMTVEPGFYGQKFIVNGMEKIRKAKEL
IHTRPIELEVDGGVNDTNIQELKKNGVDIVVVGAGLYKTGKPMDNARNLKSLAKQ

Specific function: Unknown

COG id: COG0036

COG function: function code G; Pentose-5-phosphate-3-epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribulose-phosphate 3-epimerase family [H]

Homologues:

Organism=Homo sapiens, GI40385883, Length=219, Percent_Identity=37.4429223744292, Blast_Score=137, Evalue=5e-33,
Organism=Homo sapiens, GI219879828, Length=221, Percent_Identity=37.5565610859729, Blast_Score=132, Evalue=2e-31,
Organism=Homo sapiens, GI24307923, Length=174, Percent_Identity=32.183908045977, Blast_Score=89, Evalue=2e-18,
Organism=Escherichia coli, GI1789788, Length=198, Percent_Identity=37.8787878787879, Blast_Score=135, Evalue=2e-33,
Organism=Escherichia coli, GI1790523, Length=213, Percent_Identity=35.2112676056338, Blast_Score=132, Evalue=1e-32,
Organism=Escherichia coli, GI1790754, Length=170, Percent_Identity=31.1764705882353, Blast_Score=95, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI17552948, Length=203, Percent_Identity=37.9310344827586, Blast_Score=125, Evalue=1e-29,
Organism=Saccharomyces cerevisiae, GI6322341, Length=216, Percent_Identity=33.7962962962963, Blast_Score=132, Evalue=6e-32,
Organism=Drosophila melanogaster, GI24586301, Length=196, Percent_Identity=35.2040816326531, Blast_Score=127, Evalue=7e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000056
- InterPro:   IPR011060 [H]

Pfam domain/function: PF00834 Ribul_P_3_epim [H]

EC number: =5.1.3.1 [H]

Molecular weight: Translated: 23771; Mature: 23771

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: PS01086 RIBUL_P_3_EPIMER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKISASILATKLTELGETVPHYDPSAIDLMHMDVMDGNFVPQISFGEALSKEVKALTTIP
CCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHEECC
LDVHLMVSKPENHVPKYYELNPYCITFHIETTDFPVRLAQEIKSYGTKVGVSLNPGTSVS
EEEEEEEECCCCCCCCEEECCCEEEEEEEECCCCHHHHHHHHHHCCCEEEEEECCCCCHH
TLENVLPYVDLVLLMTVEPGFYGQKFIVNGMEKIRKAKELIHTRPIELEVDGGVNDTNIQ
HHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHH
ELKKNGVDIVVVGAGLYKTGKPMDNARNLKSLAKQ
HHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHHCC
>Mature Secondary Structure
MKISASILATKLTELGETVPHYDPSAIDLMHMDVMDGNFVPQISFGEALSKEVKALTTIP
CCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHEECC
LDVHLMVSKPENHVPKYYELNPYCITFHIETTDFPVRLAQEIKSYGTKVGVSLNPGTSVS
EEEEEEEECCCCCCCCEEECCCEEEEEEEECCCCHHHHHHHHHHCCCEEEEEECCCCCHH
TLENVLPYVDLVLLMTVEPGFYGQKFIVNGMEKIRKAKELIHTRPIELEVDGGVNDTNIQ
HHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHH
ELKKNGVDIVVVGAGLYKTGKPMDNARNLKSLAKQ
HHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]