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The map label for this gene is rfaF [H]

Identifier: 116328140

GI number: 116328140

Start: 1677208

End: 1678269

Strand: Reverse

Name: rfaF [H]

Synonym: LBL_1439

Alternate gene names: 116328140

Gene position: 1678269-1677208 (Counterclockwise)

Preceding gene: 116328141

Following gene: 116328138

Centisome position: 46.43

GC content: 42.09

Gene sequence:

>1062_bases
ATGAATTTATTGGTCATGAGATTTTCAGCCATGGGCGACGTCGCTCTTATGGCTCCTGCAATCATAGCGATCGCGGCAAA
ATATACAAATATCCAACTTACAATCGTGACTAGAGGAAACTATGCCCCTTTTTTTTATAATATTCCGAATGTCAACGTAG
TCGGCTTTAACCTAAAACGATATCGGGGGATTGTAGGACTTTATCGACTTTTTCAGGAAATCAACAAACTCGGTCCTTAT
GAAAAAGTGATCGATCTTCATTCTTCCGTTCGTTCCAGACTGCTCAGCCTTCTCTTTTCCTTTCGGGGAATCGGCGTGTT
CCGAATTGTGAAAGGAAGAAAAGAAAAACAGAGACAAATCCGTCAAAAAAGAAAAATTCTCACCCCTCTCCCTCATACCG
TAGATCGCTATCTCAAGGTTTTTGAAAACGCAGGTTATCCGGCATCGGTTAGAAAAGGTCCTTGGATCAATGTGGATCCA
GAATCCAAAATATTCGCAAAAGAATTTTTCGAATCCCAGAACATTCTAAAAAAGGAAAGTCTTTGGATCGGCTTCGCTCC
GTTTGCGGGACACGCTCTAAAAGAATGGCCCCGGGAAAAAAGTAAAACTCTACTCCAGCTTCTTCTGGAAAAGTTCCCAG
AAGTTAAAATTTTTCTCTTCGGTTCTAAAGATGAATCCAAAATTCTTTCGGAATGGAGTCGTGGCTTCGAGGAATCTTTG
AAGATCGTTTCCGGCGGTAAATTGGGGATTCGAGGCGAACTCGGAATCATGGAAAGGATGGACGTTATGATCGGGATGGA
TTCGTCCAACGTACACATCGCTGCACTTTTAAAAAGACCTGTGATCGGAATTTATGGAACGACCCACCCGCATTCCGGCT
TCGCTCCGTTCGGCCAGGAAGATTCCGGAGTATTACAAATCGATAATTTACCTTGTAGACCTTGTAGTATATACGGAAAC
ACCACTTGTTATCGGAAAGATTTCGCCTGTATGGAATGGATTCAACCGGAAGATGTTATTAAAAGAATTCAGGTAGTTTA
CAATATCAACACTCTGTTTTAG

Upstream 100 bases:

>100_bases
TGGAAGACCTAAAAAATGGAGATAAATTCTATAAAGTATATCGTCAGATGAAAATGTACAACGATCAAAATTTGAACCCT
TCCCTGTATTTTAAAAGATC

Downstream 100 bases:

>100_bases
TTTAAAGTCCCGTAAGAATTTAACAAGCCGGAGTTCCCACGACTCCCTAGAACAGACTTAGAACCCGTCTCAAAACCTGA
AGAAAAATATCTCTAAACGA

Product: heptosyltransferase

Products: NA

Alternate protein names: ADP-heptose--LPS heptosyltransferase II [H]

Number of amino acids: Translated: 353; Mature: 353

Protein sequence:

>353_residues
MNLLVMRFSAMGDVALMAPAIIAIAAKYTNIQLTIVTRGNYAPFFYNIPNVNVVGFNLKRYRGIVGLYRLFQEINKLGPY
EKVIDLHSSVRSRLLSLLFSFRGIGVFRIVKGRKEKQRQIRQKRKILTPLPHTVDRYLKVFENAGYPASVRKGPWINVDP
ESKIFAKEFFESQNILKKESLWIGFAPFAGHALKEWPREKSKTLLQLLLEKFPEVKIFLFGSKDESKILSEWSRGFEESL
KIVSGGKLGIRGELGIMERMDVMIGMDSSNVHIAALLKRPVIGIYGTTHPHSGFAPFGQEDSGVLQIDNLPCRPCSIYGN
TTCYRKDFACMEWIQPEDVIKRIQVVYNINTLF

Sequences:

>Translated_353_residues
MNLLVMRFSAMGDVALMAPAIIAIAAKYTNIQLTIVTRGNYAPFFYNIPNVNVVGFNLKRYRGIVGLYRLFQEINKLGPY
EKVIDLHSSVRSRLLSLLFSFRGIGVFRIVKGRKEKQRQIRQKRKILTPLPHTVDRYLKVFENAGYPASVRKGPWINVDP
ESKIFAKEFFESQNILKKESLWIGFAPFAGHALKEWPREKSKTLLQLLLEKFPEVKIFLFGSKDESKILSEWSRGFEESL
KIVSGGKLGIRGELGIMERMDVMIGMDSSNVHIAALLKRPVIGIYGTTHPHSGFAPFGQEDSGVLQIDNLPCRPCSIYGN
TTCYRKDFACMEWIQPEDVIKRIQVVYNINTLF
>Mature_353_residues
MNLLVMRFSAMGDVALMAPAIIAIAAKYTNIQLTIVTRGNYAPFFYNIPNVNVVGFNLKRYRGIVGLYRLFQEINKLGPY
EKVIDLHSSVRSRLLSLLFSFRGIGVFRIVKGRKEKQRQIRQKRKILTPLPHTVDRYLKVFENAGYPASVRKGPWINVDP
ESKIFAKEFFESQNILKKESLWIGFAPFAGHALKEWPREKSKTLLQLLLEKFPEVKIFLFGSKDESKILSEWSRGFEESL
KIVSGGKLGIRGELGIMERMDVMIGMDSSNVHIAALLKRPVIGIYGTTHPHSGFAPFGQEDSGVLQIDNLPCRPCSIYGN
TTCYRKDFACMEWIQPEDVIKRIQVVYNINTLF

Specific function: Lipopolysaccharide core biosynthesis. [C]

COG id: COG0859

COG function: function code M; ADP-heptose:LPS heptosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 9 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002201
- InterPro:   IPR011910 [H]

Pfam domain/function: PF01075 Glyco_transf_9 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 40271; Mature: 40271

Theoretical pI: Translated: 10.25; Mature: 10.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLLVMRFSAMGDVALMAPAIIAIAAKYTNIQLTIVTRGNYAPFFYNIPNVNVVGFNLKR
CCEEEEEECCCCCHHHHHHHHHHHHEEECEEEEEEEECCCCCCEEEECCCCEEEECCHHH
YRGIVGLYRLFQEINKLGPYEKVIDLHSSVRSRLLSLLFSFRGIGVFRIVKGRKEKQRQI
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHH
RQKRKILTPLPHTVDRYLKVFENAGYPASVRKGPWINVDPESKIFAKEFFESQNILKKES
HHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHCCHHHHC
LWIGFAPFAGHALKEWPREKSKTLLQLLLEKFPEVKIFLFGSKDESKILSEWSRGFEESL
EEEEECHHCCHHHHHCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHCHHHHH
KIVSGGKLGIRGELGIMERMDVMIGMDSSNVHIAALLKRPVIGIYGTTHPHSGFAPFGQE
EEECCCCEEECCCCCHHHHHHEEEECCCCCEEEEEEHHCCEEEEEECCCCCCCCCCCCCC
DSGVLQIDNLPCRPCSIYGNTTCYRKDFACMEWIQPEDVIKRIQVVYNINTLF
CCCEEEECCCCCCCEEECCCCEEEECCHHHHHCCCHHHHHHHHHHHHEEHCCC
>Mature Secondary Structure
MNLLVMRFSAMGDVALMAPAIIAIAAKYTNIQLTIVTRGNYAPFFYNIPNVNVVGFNLKR
CCEEEEEECCCCCHHHHHHHHHHHHEEECEEEEEEEECCCCCCEEEECCCCEEEECCHHH
YRGIVGLYRLFQEINKLGPYEKVIDLHSSVRSRLLSLLFSFRGIGVFRIVKGRKEKQRQI
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHH
RQKRKILTPLPHTVDRYLKVFENAGYPASVRKGPWINVDPESKIFAKEFFESQNILKKES
HHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHCCHHHHC
LWIGFAPFAGHALKEWPREKSKTLLQLLLEKFPEVKIFLFGSKDESKILSEWSRGFEESL
EEEEECHHCCHHHHHCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHCHHHHH
KIVSGGKLGIRGELGIMERMDVMIGMDSSNVHIAALLKRPVIGIYGTTHPHSGFAPFGQE
EEECCCCEEECCCCCHHHHHHEEEECCCCCEEEEEEHHCCEEEEEECCCCCCCCCCCCCC
DSGVLQIDNLPCRPCSIYGNTTCYRKDFACMEWIQPEDVIKRIQVVYNINTLF
CCCEEEECCCCCCCEEECCCCEEEECCHHHHHCCCHHHHHHHHHHHHEEHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Glycosyltransferases; Transferring other glycosyl groups [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]