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The map label for this gene is ybfF [C]

Identifier: 116328106

GI number: 116328106

Start: 1637003

End: 1637833

Strand: Direct

Name: ybfF [C]

Synonym: LBL_1404

Alternate gene names: 116328106

Gene position: 1637003-1637833 (Clockwise)

Preceding gene: 116328105

Following gene: 116328108

Centisome position: 45.29

GC content: 41.03

Gene sequence:

>831_bases
ATGCCTGCCGTAGATTTAAGTTTTCGTAAGATCGATTTTCAAAGGGGGAAGTTTTTTTCTCCGATTTGTGGCCCGATTTT
AGTTTTACACGGACTTTTCGGCTCCTCTAAAAATTGGTTCAGTGTGGGCGATTTCCTAAGTCGATACGCAGACGTTTATC
TGATGGATCTTCGAAATCACGGAGATTCTCCTCATTCGAACGAACATTCTCTTGCTTCTATGGTGGAAGACGTGGAAGTA
TGGATTACAAAGCAAGAAATCGAAAAACCGGTGATCTTGGGGCATTCCATGGGCGGGCTCGTGACTATGGGTTTTGCATT
AAGAAATCCGAATATTCCTTCTTTCTTATTTGTGGAGGATATCGCTCCTAAGGACTATCCGTTTCATTACGAAAGCGAGC
TTGCCTGTCTTCGAACTGACGTTTCCTGCTTTAAATCCCGGCAGGAGATTGATGCGGCTTTGACGGAAATTCTTCCCAAT
TCGTTTATTAGAAATTTTTTAGAGATGAATTTGGAACGGCTTGAAAACGGCGGTTACCGTTGGAAATTGAACGTAGAGGG
GATTGCAAATTCTCCCAGACTGTTACAGAATTTTTTCAGTAGATATGCAGAAAGTCCATACCCGGGACAAACGTATTTTA
TAACCGGCGGAGCTTCGGAATATTTTCGTAAGGAAGATATTGGACTGACTCGAAACTTTTTTCCGAATTCTCAATTTTAC
ACGATTCCGGGTGGGGATCATTATATCCACTTCACAAAAATGTCCGAGTTTAAAAGAGTTTTAGAATCTATTTTTGAGAA
GTTGGACGATTCTGAATTTGCAATAAACTGA

Upstream 100 bases:

>100_bases
CGCGAAAAGAAATTTATGAATCTTTTCGCAGGGATTTGCAGTCTCTTCCTTATCGATACGGCAAAAGATACCACGGTTTT
CTCAAAAAAATTCAGAAAGA

Downstream 100 bases:

>100_bases
ATCCAACTAAAAAACAAGTTCCGATTCCAAAAGGAACGAGCAGAGTAAAGCCGAAACCGGTCCATTTTCCGAAGATCAAA
GTCAGAATCGGAGTCAGTCC

Product: hydrolase or acyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 276; Mature: 275

Protein sequence:

>276_residues
MPAVDLSFRKIDFQRGKFFSPICGPILVLHGLFGSSKNWFSVGDFLSRYADVYLMDLRNHGDSPHSNEHSLASMVEDVEV
WITKQEIEKPVILGHSMGGLVTMGFALRNPNIPSFLFVEDIAPKDYPFHYESELACLRTDVSCFKSRQEIDAALTEILPN
SFIRNFLEMNLERLENGGYRWKLNVEGIANSPRLLQNFFSRYAESPYPGQTYFITGGASEYFRKEDIGLTRNFFPNSQFY
TIPGGDHYIHFTKMSEFKRVLESIFEKLDDSEFAIN

Sequences:

>Translated_276_residues
MPAVDLSFRKIDFQRGKFFSPICGPILVLHGLFGSSKNWFSVGDFLSRYADVYLMDLRNHGDSPHSNEHSLASMVEDVEV
WITKQEIEKPVILGHSMGGLVTMGFALRNPNIPSFLFVEDIAPKDYPFHYESELACLRTDVSCFKSRQEIDAALTEILPN
SFIRNFLEMNLERLENGGYRWKLNVEGIANSPRLLQNFFSRYAESPYPGQTYFITGGASEYFRKEDIGLTRNFFPNSQFY
TIPGGDHYIHFTKMSEFKRVLESIFEKLDDSEFAIN
>Mature_275_residues
PAVDLSFRKIDFQRGKFFSPICGPILVLHGLFGSSKNWFSVGDFLSRYADVYLMDLRNHGDSPHSNEHSLASMVEDVEVW
ITKQEIEKPVILGHSMGGLVTMGFALRNPNIPSFLFVEDIAPKDYPFHYESELACLRTDVSCFKSRQEIDAALTEILPNS
FIRNFLEMNLERLENGGYRWKLNVEGIANSPRLLQNFFSRYAESPYPGQTYFITGGASEYFRKEDIGLTRNFFPNSQFYT
IPGGDHYIHFTKMSEFKRVLESIFEKLDDSEFAIN

Specific function: Unknown

COG id: COG0596

COG function: function code R; Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dmpD/todF/xylF esterase family [H]

Homologues:

Organism=Homo sapiens, GI23200008, Length=261, Percent_Identity=29.1187739463602, Blast_Score=117, Evalue=1e-26,
Organism=Homo sapiens, GI23200012, Length=241, Percent_Identity=29.045643153527, Blast_Score=116, Evalue=2e-26,
Organism=Homo sapiens, GI223941839, Length=254, Percent_Identity=26.3779527559055, Blast_Score=84, Evalue=2e-16,
Organism=Escherichia coli, GI1786902, Length=252, Percent_Identity=28.968253968254, Blast_Score=86, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17508535, Length=242, Percent_Identity=34.297520661157, Blast_Score=120, Evalue=6e-28,
Organism=Caenorhabditis elegans, GI17507063, Length=237, Percent_Identity=29.1139240506329, Blast_Score=84, Evalue=7e-17,
Organism=Saccharomyces cerevisiae, GI6321468, Length=268, Percent_Identity=29.1044776119403, Blast_Score=106, Evalue=5e-24,
Organism=Drosophila melanogaster, GI24640348, Length=264, Percent_Identity=31.0606060606061, Blast_Score=122, Evalue=3e-28,
Organism=Drosophila melanogaster, GI24646055, Length=235, Percent_Identity=28.0851063829787, Blast_Score=96, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000073
- InterPro:   IPR012908 [H]

Pfam domain/function: PF00561 Abhydrolase_1; PF07819 PGAP1 [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 31723; Mature: 31592

Theoretical pI: Translated: 5.38; Mature: 5.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPAVDLSFRKIDFQRGKFFSPICGPILVLHGLFGSSKNWFSVGDFLSRYADVYLMDLRNH
CCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHEEEEEHHCC
GDSPHSNEHSLASMVEDVEVWITKQEIEKPVILGHSMGGLVTMGFALRNPNIPSFLFVED
CCCCCCCHHHHHHHHHHHHHEEEHHHCCCCEEEECCCCCHHEEEEEECCCCCCCEEEEEC
IAPKDYPFHYESELACLRTDVSCFKSRQEIDAALTEILPNSFIRNFLEMNLERLENGGYR
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
WKLNVEGIANSPRLLQNFFSRYAESPYPGQTYFITGGASEYFRKEDIGLTRNFFPNSQFY
EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHCCCCCCCCCCCCCEE
TIPGGDHYIHFTKMSEFKRVLESIFEKLDDSEFAIN
EECCCCEEEEEHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
PAVDLSFRKIDFQRGKFFSPICGPILVLHGLFGSSKNWFSVGDFLSRYADVYLMDLRNH
CCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHEEEEEHHCC
GDSPHSNEHSLASMVEDVEVWITKQEIEKPVILGHSMGGLVTMGFALRNPNIPSFLFVED
CCCCCCCHHHHHHHHHHHHHEEEHHHCCCCEEEECCCCCHHEEEEEECCCCCCCEEEEEC
IAPKDYPFHYESELACLRTDVSCFKSRQEIDAALTEILPNSFIRNFLEMNLERLENGGYR
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
WKLNVEGIANSPRLLQNFFSRYAESPYPGQTYFITGGASEYFRKEDIGLTRNFFPNSQFY
EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHCCCCCCCCCCCCCEE
TIPGGDHYIHFTKMSEFKRVLESIFEKLDDSEFAIN
EECCCCEEEEEHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]