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The map label for this gene is 116328103

Identifier: 116328103

GI number: 116328103

Start: 1633087

End: 1634796

Strand: Direct

Name: 116328103

Synonym: LBL_1401

Alternate gene names: NA

Gene position: 1633087-1634796 (Clockwise)

Preceding gene: 116328096

Following gene: 116328104

Centisome position: 45.18

GC content: 43.16

Gene sequence:

>1710_bases
ATGAGTAAACCCTTAATCGTTCAGAGTGATAGAACTATGCTCTTGGAGGTGGATAATCCGGAATTTGAAGCCTGTCAAAG
TATAGTTTCCAAATTTGCCGAGTTGGAGAAAAGTCCGGAGTACCTTCACACATACAGAATTTCTCCTCTTTCTCTTTGGA
ATGCAGCATCGATCAAAATGACTGCGGATGAAATTGTAGAATGTTTGGAGAAGTTTTCCAGATATTCCGTTCCGAAAAAC
ATCGTAAATGAAATCCGCGAACAGATTAGTAGGTACGGTAAGGTAAAACTCGTCAAGGAAGAGTCTGGAGAGCTTGCAAT
CCTATCGAATGAAAAGGGATTTCTTCAAGAGATCGGAAATCATAGAGCGGTGCAACCGTTTATTGAAACCGTTTTTCCCG
ATAAAATTTATATCAAAAAAGAATACCGCGGTCACATCAAACAAGCGTTGATCAAAATCGGTTTTCCCGTGGAAGACCTT
GCCGGTTACGACGAGGGAAATAAGTACGGTTTTAATCTGAGACCTACGAGTACCAACGGTAAAAAATTTGGAATGCGAGA
TTACCAAAGAGCCTGTGTGGAAGTATTCCATGCGGGAGGTGGTAACGAGGGAGGTTCCGGTGTTGTGGTGCTTCCTTGTG
GGGCCGGTAAGACCATTGTAGGAATCGGTGTAATGCAGATCGTCGGAGCCGAAACCTTGATTTTGGTTACGAATACACTT
TCGATCCGTCAGTGGAGAAACGAAATTTTGGATAAAACCGATATTCCTCCCGAGGACATTGGGGAATATTCCGGTGAAGT
CAAAGAAATTCGTCCAATTACAATCGCGACGTACAACATTCTCACCCATAGAAAAAAGAAAGGTGGGGATTTTACGCATT
TTCATCTATTCAGCGCCAATAACTGGGGACTGATCGTTTACGACGAGGTCCATTTGCTTCCCGCTCCCGTGTTCCGAATG
ACTTCCGAACTTCAAGCAAAAAGAAGACTCGGACTGACCGCGACTCTCGTAAGAGAAGATGGTCTGGAAGAAGACGTGTT
CTCTCTTATTGGGCCGAAAAAATACGACGTTCCTTGGAAGGAACTCGAAAGTAAGTCTTGGATTGCGGAGGCGAAATGTA
AGGAAATTCGAGTGAATATGGAAGATGATCTACGTCTGAAGTATTCCATTGCGGACGACCGGGAGAAATTCAGGCTTGCT
TCCGAAAATCCGGAAAAGATGAAAGCGATCGATCTCATCATGGAAAAACATTCCGAGTCTCATTTGCTTGTGATTGGTCA
ATACATCAATCAGTTGGAAGAAATATCAAAGAAATTTAATATTCCTTTGATTACGGGTAAAACTCCGCTTCCAGAGAGGC
AGACTTTGTACGATTCTTTTCGTTCCGGTAAGATCAAGTCTCTCGTAGTCAGTAAGGTGGCAAACTTTTCGATCGATCTT
CCGGATGCGAATATTGCGATTCAGGTTTCGGGCACCTTCGGTTCTAGGCAGGAAGAAGCTCAGAGATTGGGCCGAATTCT
AAGACCGAAAGGACACGACAACACGGCCGTATTTTATTCTCTCATATCAAGAGATACGAATGAGGAACGTTTCGGTCAGA
ATCGCCAGTTGTTTCTCACCGAACAAGGCTACGAATACGAAATTTATACTTTGGATCAATTTAGAGAAGCTCAGGAAGAA
TTAGCTCAATTGCAACTGAATAATGTTTGA

Upstream 100 bases:

>100_bases
AAAACTCGGGAGTAACTTACCGATAGGATTCTTATGTTCGCATTCTTCTTGACAGAAAGGGGTTGATTTTCAGTCTAAAC
AAACAGGAAACCAGACACAA

Downstream 100 bases:

>100_bases
TTCTTTTTTGTTAGAATTGGTCGGAAAAAAACGGATCGAAGTTAAAATATAAAAAGGGGAACAGAATGGATCTCAGCGCA
AAAAGGCTGAATGTCATCGA

Product: superfamily II DNA/RNA helicase

Products: NA

Alternate protein names: DNA Repair Helicase; Type III Restriction Res Subunit; Helicase Domain-Containing Protein; Helicase Domain Protein; ATP-Dependent DNA Helicase; DNA Repair Helicase RAD; DNA Repair Helicase Rad; Type III Restriction Res Subunit Family; Superfamily II DNA/RNA Helicase; Helicase; DNA/RNA Helicase; DNA Repair Protein Rad; DNA Repair Protein; DNA Repair Protein RAD; DNA Helicase; DNA/RNA Helicase Superfamily II; Helicase-Like Protein; Helicase Protein; ATP-Dependent Helicase; DNA Or RNA Helicase Of Superfamily II; Helicase DNA Repair; Helicase DNA Repair Rad; XPB/RAD25-Related Helicase; DEAD/DEAH Box Helicase-Like; DNA-Helicase; DNA/RNA Repair Helicase; DNA Or RNA Helicase Of Superfamily Protein II; DEAD/DEAH Box Helicase; Helicase ATP-Dependent; DNA Or RNA Helicase; RAD25-Type DNA Repair Helicase; DNA Repair Related Protein; Restriction Endonuclease Family Protein; Helicase ATP-Dependent Intein-Containing

Number of amino acids: Translated: 569; Mature: 568

Protein sequence:

>569_residues
MSKPLIVQSDRTMLLEVDNPEFEACQSIVSKFAELEKSPEYLHTYRISPLSLWNAASIKMTADEIVECLEKFSRYSVPKN
IVNEIREQISRYGKVKLVKEESGELAILSNEKGFLQEIGNHRAVQPFIETVFPDKIYIKKEYRGHIKQALIKIGFPVEDL
AGYDEGNKYGFNLRPTSTNGKKFGMRDYQRACVEVFHAGGGNEGGSGVVVLPCGAGKTIVGIGVMQIVGAETLILVTNTL
SIRQWRNEILDKTDIPPEDIGEYSGEVKEIRPITIATYNILTHRKKKGGDFTHFHLFSANNWGLIVYDEVHLLPAPVFRM
TSELQAKRRLGLTATLVREDGLEEDVFSLIGPKKYDVPWKELESKSWIAEAKCKEIRVNMEDDLRLKYSIADDREKFRLA
SENPEKMKAIDLIMEKHSESHLLVIGQYINQLEEISKKFNIPLITGKTPLPERQTLYDSFRSGKIKSLVVSKVANFSIDL
PDANIAIQVSGTFGSRQEEAQRLGRILRPKGHDNTAVFYSLISRDTNEERFGQNRQLFLTEQGYEYEIYTLDQFREAQEE
LAQLQLNNV

Sequences:

>Translated_569_residues
MSKPLIVQSDRTMLLEVDNPEFEACQSIVSKFAELEKSPEYLHTYRISPLSLWNAASIKMTADEIVECLEKFSRYSVPKN
IVNEIREQISRYGKVKLVKEESGELAILSNEKGFLQEIGNHRAVQPFIETVFPDKIYIKKEYRGHIKQALIKIGFPVEDL
AGYDEGNKYGFNLRPTSTNGKKFGMRDYQRACVEVFHAGGGNEGGSGVVVLPCGAGKTIVGIGVMQIVGAETLILVTNTL
SIRQWRNEILDKTDIPPEDIGEYSGEVKEIRPITIATYNILTHRKKKGGDFTHFHLFSANNWGLIVYDEVHLLPAPVFRM
TSELQAKRRLGLTATLVREDGLEEDVFSLIGPKKYDVPWKELESKSWIAEAKCKEIRVNMEDDLRLKYSIADDREKFRLA
SENPEKMKAIDLIMEKHSESHLLVIGQYINQLEEISKKFNIPLITGKTPLPERQTLYDSFRSGKIKSLVVSKVANFSIDL
PDANIAIQVSGTFGSRQEEAQRLGRILRPKGHDNTAVFYSLISRDTNEERFGQNRQLFLTEQGYEYEIYTLDQFREAQEE
LAQLQLNNV
>Mature_568_residues
SKPLIVQSDRTMLLEVDNPEFEACQSIVSKFAELEKSPEYLHTYRISPLSLWNAASIKMTADEIVECLEKFSRYSVPKNI
VNEIREQISRYGKVKLVKEESGELAILSNEKGFLQEIGNHRAVQPFIETVFPDKIYIKKEYRGHIKQALIKIGFPVEDLA
GYDEGNKYGFNLRPTSTNGKKFGMRDYQRACVEVFHAGGGNEGGSGVVVLPCGAGKTIVGIGVMQIVGAETLILVTNTLS
IRQWRNEILDKTDIPPEDIGEYSGEVKEIRPITIATYNILTHRKKKGGDFTHFHLFSANNWGLIVYDEVHLLPAPVFRMT
SELQAKRRLGLTATLVREDGLEEDVFSLIGPKKYDVPWKELESKSWIAEAKCKEIRVNMEDDLRLKYSIADDREKFRLAS
ENPEKMKAIDLIMEKHSESHLLVIGQYINQLEEISKKFNIPLITGKTPLPERQTLYDSFRSGKIKSLVVSKVANFSIDLP
DANIAIQVSGTFGSRQEEAQRLGRILRPKGHDNTAVFYSLISRDTNEERFGQNRQLFLTEQGYEYEIYTLDQFREAQEEL
AQLQLNNV

Specific function: Unknown

COG id: COG1061

COG function: function code KL; DNA or RNA helicases of superfamily II

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI4557563, Length=431, Percent_Identity=34.1067285382831, Blast_Score=243, Evalue=3e-64,
Organism=Caenorhabditis elegans, GI17556358, Length=433, Percent_Identity=34.1801385681293, Blast_Score=238, Evalue=7e-63,
Organism=Saccharomyces cerevisiae, GI6322048, Length=620, Percent_Identity=31.9354838709677, Blast_Score=288, Evalue=1e-78,
Organism=Drosophila melanogaster, GI221331068, Length=445, Percent_Identity=34.1573033707865, Blast_Score=236, Evalue=4e-62,
Organism=Drosophila melanogaster, GI24662247, Length=445, Percent_Identity=34.1573033707865, Blast_Score=236, Evalue=4e-62,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 64737; Mature: 64606

Theoretical pI: Translated: 6.32; Mature: 6.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKPLIVQSDRTMLLEVDNPEFEACQSIVSKFAELEKSPEYLHTYRISPLSLWNAASIKM
CCCCCEEECCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCHHEEEECCCCEECCCCEEEE
TADEIVECLEKFSRYSVPKNIVNEIREQISRYGKVKLVKEESGELAILSNEKGFLQEIGN
CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEECCCCEEEEECCCHHHHHHCC
HRAVQPFIETVFPDKIYIKKEYRGHIKQALIKIGFPVEDLAGYDEGNKYGFNLRPTSTNG
CCCHHHHHHHHCCCEEEEEHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCEEEEECCCCC
KKFGMRDYQRACVEVFHAGGGNEGGSGVVVLPCGAGKTIVGIGVMQIVGAETLILVTNTL
CCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCEEHHHHHHHHHCCCEEEEEECCH
SIRQWRNEILDKTDIPPEDIGEYSGEVKEIRPITIATYNILTHRKKKGGDFTHFHLFSAN
HHHHHHHHHCCCCCCCHHHHHHHCCCHHHCCEEEEEEEHHHHHHCCCCCCEEEEEEEECC
NWGLIVYDEVHLLPAPVFRMTSELQAKRRLGLTATLVREDGLEEDVFSLIGPKKYDVPWK
CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEHHHCCCHHHHHHHHCCCCCCCCHH
ELESKSWIAEAKCKEIRVNMEDDLRLKYSIADDREKFRLASENPEKMKAIDLIMEKHSES
HHCCCCHHHHCCHHHEEECCCCCCEEEEEECCCHHHHEECCCCHHHHHHHHHHHHHCCCC
HLLVIGQYINQLEEISKKFNIPLITGKTPLPERQTLYDSFRSGKIKSLVVSKVANFSIDL
CEEEHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCEEEC
PDANIAIQVSGTFGSRQEEAQRLGRILRPKGHDNTAVFYSLISRDTNEERFGQNRQLFLT
CCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHCCCCCEEEEE
EQGYEYEIYTLDQFREAQEELAQLQLNNV
CCCCEEEEEEHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SKPLIVQSDRTMLLEVDNPEFEACQSIVSKFAELEKSPEYLHTYRISPLSLWNAASIKM
CCCCEEECCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCHHEEEECCCCEECCCCEEEE
TADEIVECLEKFSRYSVPKNIVNEIREQISRYGKVKLVKEESGELAILSNEKGFLQEIGN
CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEECCCCEEEEECCCHHHHHHCC
HRAVQPFIETVFPDKIYIKKEYRGHIKQALIKIGFPVEDLAGYDEGNKYGFNLRPTSTNG
CCCHHHHHHHHCCCEEEEEHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCEEEEECCCCC
KKFGMRDYQRACVEVFHAGGGNEGGSGVVVLPCGAGKTIVGIGVMQIVGAETLILVTNTL
CCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCEEHHHHHHHHHCCCEEEEEECCH
SIRQWRNEILDKTDIPPEDIGEYSGEVKEIRPITIATYNILTHRKKKGGDFTHFHLFSAN
HHHHHHHHHCCCCCCCHHHHHHHCCCHHHCCEEEEEEEHHHHHHCCCCCCEEEEEEEECC
NWGLIVYDEVHLLPAPVFRMTSELQAKRRLGLTATLVREDGLEEDVFSLIGPKKYDVPWK
CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEHHHCCCHHHHHHHHCCCCCCCCHH
ELESKSWIAEAKCKEIRVNMEDDLRLKYSIADDREKFRLASENPEKMKAIDLIMEKHSES
HHCCCCHHHHCCHHHEEECCCCCCEEEEEECCCHHHHEECCCCHHHHHHHHHHHHHCCCC
HLLVIGQYINQLEEISKKFNIPLITGKTPLPERQTLYDSFRSGKIKSLVVSKVANFSIDL
CEEEHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCEEEC
PDANIAIQVSGTFGSRQEEAQRLGRILRPKGHDNTAVFYSLISRDTNEERFGQNRQLFLT
CCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHCCCCCEEEEE
EQGYEYEIYTLDQFREAQEELAQLQLNNV
CCCCEEEEEEHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA