Click here to switch to the map view.

The map label for this gene is yadH [H]

Identifier: 116328090

GI number: 116328090

Start: 1619137

End: 1619910

Strand: Reverse

Name: yadH [H]

Synonym: LBL_1387

Alternate gene names: 116328090

Gene position: 1619910-1619137 (Counterclockwise)

Preceding gene: 116328091

Following gene: 116328089

Centisome position: 44.82

GC content: 37.21

Gene sequence:

>774_bases
ATGAATTTAATCGAAAAATACAACGCATTCAAGACCATCGTCATCAAGGAAACGATTCGAATTCTACGCATTTGGATTCA
AACAATCATTCCTCCGGGAATCACAATCACACTTTATTTTATCATTTTTGGAAAATTGATCGGTTCTCAAATCGGTAGTA
TTGGAAATCACACCTATATCCAATTTATTGTTCCGGGTCTTGTAATGATGTCCGTAATCATCAATTCGTATAACAACGTG
GTTTCTTCCTTTTTCGGGGCAAAATTTCAAAAGAACATAGAAGAGATTTTGGTTTCACCCACTCCTCCTTCTTTGATTGT
ACTTGGTTTTACAATCGGCGGGGTAATTCGAGGAATGTCAGTCGGAATTCTCGTGATTGCGATTTCACTTTTTTTCACAG
AATTGGAAATATATCATTTTACTATGTTAATCGCTACCGTGTTTTTAAGTTCCCTTTTGTTTTCCCTTGGAGGATTGTTA
AACGCACTTTATGCAAAAAAGTTCGACGATGTAACGATTATCCCAACTTTCATTTTAACTCCTTTGACGTATTTAGGGGG
AGTTTTCTATTCGATCCAAATGCTTCCTCCATTTTGGCAGAACGTTTCCAAATTGAATCCGATTTTGTATATGGTGAATG
CGTTTCGTTACGGATTTTTAGGTGTGAGCGATATTGAACCGTGGTTCGCTCTTTCTATGATTGGAGCCGCAACCTTATCG
TTGTATGTTCTTTCCGTGCACTTATTGAAAAAAGGGATCGGAATCCGAAATTAA

Upstream 100 bases:

>100_bases
TATTTAAGCTCCTTGAGCAAAATGGAATTAAGATCAGCAGTATGAGAAATAAATCCAACCGATTGGAAGAGCTCTTTCTC
AAATTGGTGGAGAAAAAATC

Downstream 100 bases:

>100_bases
TCCATCTCCAGTTTATGAGCGTCTCCGAAGAAATCCGTTCCCTTTTAAATTCTTCCTTGAATCCTTACAGATTGGAAGTA
GAAGATTTGAGTACGGAACA

Product: membrane protein of an ABC transporter complex

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 257

Protein sequence:

>257_residues
MNLIEKYNAFKTIVIKETIRILRIWIQTIIPPGITITLYFIIFGKLIGSQIGSIGNHTYIQFIVPGLVMMSVIINSYNNV
VSSFFGAKFQKNIEEILVSPTPPSLIVLGFTIGGVIRGMSVGILVIAISLFFTELEIYHFTMLIATVFLSSLLFSLGGLL
NALYAKKFDDVTIIPTFILTPLTYLGGVFYSIQMLPPFWQNVSKLNPILYMVNAFRYGFLGVSDIEPWFALSMIGAATLS
LYVLSVHLLKKGIGIRN

Sequences:

>Translated_257_residues
MNLIEKYNAFKTIVIKETIRILRIWIQTIIPPGITITLYFIIFGKLIGSQIGSIGNHTYIQFIVPGLVMMSVIINSYNNV
VSSFFGAKFQKNIEEILVSPTPPSLIVLGFTIGGVIRGMSVGILVIAISLFFTELEIYHFTMLIATVFLSSLLFSLGGLL
NALYAKKFDDVTIIPTFILTPLTYLGGVFYSIQMLPPFWQNVSKLNPILYMVNAFRYGFLGVSDIEPWFALSMIGAATLS
LYVLSVHLLKKGIGIRN
>Mature_257_residues
MNLIEKYNAFKTIVIKETIRILRIWIQTIIPPGITITLYFIIFGKLIGSQIGSIGNHTYIQFIVPGLVMMSVIINSYNNV
VSSFFGAKFQKNIEEILVSPTPPSLIVLGFTIGGVIRGMSVGILVIAISLFFTELEIYHFTMLIATVFLSSLLFSLGGLL
NALYAKKFDDVTIIPTFILTPLTYLGGVFYSIQMLPPFWQNVSKLNPILYMVNAFRYGFLGVSDIEPWFALSMIGAATLS
LYVLSVHLLKKGIGIRN

Specific function: Unknown

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

Organism=Escherichia coli, GI1786320, Length=249, Percent_Identity=55.421686746988, Blast_Score=291, Evalue=3e-80,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013526
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 28619; Mature: 28619

Theoretical pI: Translated: 9.85; Mature: 9.85

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHCCCCCC
>Mature Secondary Structure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HHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]