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The map label for this gene is ydhD [C]

Identifier: 116328087

GI number: 116328087

Start: 1618214

End: 1618534

Strand: Reverse

Name: ydhD [C]

Synonym: LBL_1384

Alternate gene names: 116328087

Gene position: 1618534-1618214 (Counterclockwise)

Preceding gene: 116328088

Following gene: 116328086

Centisome position: 44.78

GC content: 43.61

Gene sequence:

>321_bases
ATGAACGAAGAAGTAAAACAAAAGATAAACGATTTAATAGGAACTAGTAAGGTCTTTCTCTTTATGAAAGGAACTCCGGA
AGCGCCTATGTGCGGTTTTTCCGCCGGTGTGTCTAACGTTTTAAGAAGTTTAGGAATCTCGTTCGGATCCTTTAACGTTC
TTTCGGACGAAACGATGCGCCAAGGCATCAAAGACTACGCAAACTGGCCGACCATTCCACAACTTTATATCGACGGGGAA
TTTATCGGCGGTCACGATATCGTGGTGGAAATGGCAAAGTCCGGAGATCTCCAGAAAAAAGCGGGAATCTTAAACTCATG
A

Upstream 100 bases:

>100_bases
GAAAGTCCATTTTAGAACAACACAGAATGGTCTATGAAACCCTGAAAGAGGAATTAAAACAAGAAGTGCACGCGTTGGCA
CTAGAAACAAGGATACAAGA

Downstream 100 bases:

>100_bases
TGAAGTTGTATCAGTTTCAATCCTGCCCTTACTGTTCCTATGTAAGGGACGAGTTTCAAAATATGGGACTCGTCCCAGGA
AAGGACTACGAACTTGTGGA

Product: glutaredoxin-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 106; Mature: 106

Protein sequence:

>106_residues
MNEEVKQKINDLIGTSKVFLFMKGTPEAPMCGFSAGVSNVLRSLGISFGSFNVLSDETMRQGIKDYANWPTIPQLYIDGE
FIGGHDIVVEMAKSGDLQKKAGILNS

Sequences:

>Translated_106_residues
MNEEVKQKINDLIGTSKVFLFMKGTPEAPMCGFSAGVSNVLRSLGISFGSFNVLSDETMRQGIKDYANWPTIPQLYIDGE
FIGGHDIVVEMAKSGDLQKKAGILNS
>Mature_106_residues
MNEEVKQKINDLIGTSKVFLFMKGTPEAPMCGFSAGVSNVLRSLGISFGSFNVLSDETMRQGIKDYANWPTIPQLYIDGE
FIGGHDIVVEMAKSGDLQKKAGILNS

Specific function: Unknown

COG id: COG0278

COG function: function code O; Glutaredoxin-related protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 glutaredoxin domain [H]

Homologues:

Organism=Homo sapiens, GI42516576, Length=101, Percent_Identity=51.4851485148515, Blast_Score=116, Evalue=4e-27,
Organism=Homo sapiens, GI95113651, Length=97, Percent_Identity=45.360824742268, Blast_Score=105, Evalue=1e-23,
Organism=Escherichia coli, GI1787943, Length=93, Percent_Identity=44.0860215053763, Blast_Score=99, Evalue=6e-23,
Organism=Caenorhabditis elegans, GI71988159, Length=89, Percent_Identity=52.8089887640449, Blast_Score=109, Evalue=3e-25,
Organism=Caenorhabditis elegans, GI71988153, Length=89, Percent_Identity=52.8089887640449, Blast_Score=109, Evalue=3e-25,
Organism=Caenorhabditis elegans, GI17556042, Length=95, Percent_Identity=44.2105263157895, Blast_Score=103, Evalue=2e-23,
Organism=Saccharomyces cerevisiae, GI6325198, Length=100, Percent_Identity=48, Blast_Score=110, Evalue=3e-26,
Organism=Saccharomyces cerevisiae, GI6320303, Length=87, Percent_Identity=45.9770114942529, Blast_Score=99, Evalue=1e-22,
Organism=Saccharomyces cerevisiae, GI6321022, Length=86, Percent_Identity=47.6744186046512, Blast_Score=97, Evalue=3e-22,
Organism=Drosophila melanogaster, GI24642023, Length=104, Percent_Identity=50, Blast_Score=121, Evalue=7e-29,
Organism=Drosophila melanogaster, GI19921242, Length=94, Percent_Identity=38.2978723404255, Blast_Score=92, Evalue=6e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002109
- InterPro:   IPR014434
- InterPro:   IPR004480
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF00462 Glutaredoxin [H]

EC number: NA

Molecular weight: Translated: 11544; Mature: 11544

Theoretical pI: Translated: 5.05; Mature: 5.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNEEVKQKINDLIGTSKVFLFMKGTPEAPMCGFSAGVSNVLRSLGISFGSFNVLSDETMR
CCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
QGIKDYANWPTIPQLYIDGEFIGGHDIVVEMAKSGDLQKKAGILNS
HHHHHHHCCCCCCEEEECCEEECCHHHHHHHHHCCCCHHHCCCCCC
>Mature Secondary Structure
MNEEVKQKINDLIGTSKVFLFMKGTPEAPMCGFSAGVSNVLRSLGISFGSFNVLSDETMR
CCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
QGIKDYANWPTIPQLYIDGEFIGGHDIVVEMAKSGDLQKKAGILNS
HHHHHHHCCCCCCEEEECCEEECCHHHHHHHHHCCCCHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]