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The map label for this gene is ygaD [C]

Identifier: 116327968

GI number: 116327968

Start: 1479391

End: 1480647

Strand: Direct

Name: ygaD [C]

Synonym: LBL_1257

Alternate gene names: 116327968

Gene position: 1479391-1480647 (Clockwise)

Preceding gene: 116327967

Following gene: 116327969

Centisome position: 40.93

GC content: 45.43

Gene sequence:

>1257_bases
ATGTCTTTTCCTAAAGTTATCGTAGTGTCTACGGGTTCGGAACTTACTGCAGGAAGAAGTCAGGATACAAATTCCTCCTG
GATTGCAAACGAACTCTTTGGGATGGGATTCACTGTTTCCAAGTTTGTTGTTTTGCCTGACGATCCTGTCGTGATACTGG
AAGAATTACGAACGTTAACCGAGCTCTCTATGAGGGAGACTTCGATTCTTTTGGTGATGACCGGAGGGCTTGGACCTACG
GAGGACGACTATACTCTGGAAGCGGTTTGCAGATTAAAAGGGGTTACCACTGAAGAAAGCCCGGTCGCAAGACAAAGAAT
TGAAACCTTTTATAAACTTCGTGGAAGAAATTTTCAGGAAGCAATGCAGACTGCAATCCGACAGGTATTCGTTCCGAAAG
GCTCCATCATATTAAATAACAGCGTCGGAATTGCGCCCGGTTTTATCACATCACTGGCGGAAAACGTGCATCTGGGTTGT
ATGCCCGGTGTTCCGGGAGAAATGACCGAAATGTTTCGGGAGGAGTTGGCTCCTTGGATTTTAAAGACTTATTCGTCCCG
AGAACTCTATTCCGGATTTCGATTTATCTGGTGGATGAGTGAGTCACAATTTCAAAAAGAATTTATTTCCAAAGAAAAGG
CCATAGCGGACGGAAAGGCAATCTGGGGAGTCGCAGCGAAAAGAGGATATATCCGTGCGAGTTTTCAGTCTGATAGTCGT
GCATTAGTCGATGATCTACTTCGAAAGTTGGATACGTTTTACGGGACCAAATCCACGCCGGACATATTCGAGGAGCTTCC
GAGGATGCTCCTCGAAAAAAAAATCACGATAGGAACCGCGGAAAGTTGCACCGGAGGGTTGATTGCCAAAACATTTACCG
ATGTTCCCGGGTCCTCGGCGTATTTTTACGGAGGAATAATCTCTTACGATAACAGCGTTAAGACGGGAATACTTGGGGTT
AAACGGAATACTTTGGATGAATTCGGAGCGGTAAGCCGCGAAACCGCTAAAGAAATGGCAGAAGGAGCGTTAGACGCTCT
TGGAGTTGATTATTCAATCAGCGTTACCGGAATCGCAGGGCCGGGAGGAGGAACTCCGCAGAAAAAAGTAGGACTCGTCT
ACTTTGGAATTGGACAAAAAAACGAGGAGACTGAAATTCACGAACATTATTTTCCATTCCCGAGAAGTTCTTTCCGAGAG
TTTGCCGCTCATACCGGAATTTATTTATTATACGATCGTTTGAAGAGGTCTGCATGA

Upstream 100 bases:

>100_bases
TTGGACTTGCAAGAATTTGTCTTGCGGCCAGGAGCGTGCTTGCGGAAGGACTTGGGTTGATCGGTGTTTCCGCTCCCGAA
AAAATGGAAAAGGAAAGTTA

Downstream 100 bases:

>100_bases
AACACTTTTCCATAACGGGATTCGGTATATTTTTCTCCGTATTGTTTTTTTATCTTCTTGGAAACTCGTATTCCACTGCG
ACCGGAATTCAAAAAGTGTG

Product: CinA-related protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 418; Mature: 417

Protein sequence:

>418_residues
MSFPKVIVVSTGSELTAGRSQDTNSSWIANELFGMGFTVSKFVVLPDDPVVILEELRTLTELSMRETSILLVMTGGLGPT
EDDYTLEAVCRLKGVTTEESPVARQRIETFYKLRGRNFQEAMQTAIRQVFVPKGSIILNNSVGIAPGFITSLAENVHLGC
MPGVPGEMTEMFREELAPWILKTYSSRELYSGFRFIWWMSESQFQKEFISKEKAIADGKAIWGVAAKRGYIRASFQSDSR
ALVDDLLRKLDTFYGTKSTPDIFEELPRMLLEKKITIGTAESCTGGLIAKTFTDVPGSSAYFYGGIISYDNSVKTGILGV
KRNTLDEFGAVSRETAKEMAEGALDALGVDYSISVTGIAGPGGGTPQKKVGLVYFGIGQKNEETEIHEHYFPFPRSSFRE
FAAHTGIYLLYDRLKRSA

Sequences:

>Translated_418_residues
MSFPKVIVVSTGSELTAGRSQDTNSSWIANELFGMGFTVSKFVVLPDDPVVILEELRTLTELSMRETSILLVMTGGLGPT
EDDYTLEAVCRLKGVTTEESPVARQRIETFYKLRGRNFQEAMQTAIRQVFVPKGSIILNNSVGIAPGFITSLAENVHLGC
MPGVPGEMTEMFREELAPWILKTYSSRELYSGFRFIWWMSESQFQKEFISKEKAIADGKAIWGVAAKRGYIRASFQSDSR
ALVDDLLRKLDTFYGTKSTPDIFEELPRMLLEKKITIGTAESCTGGLIAKTFTDVPGSSAYFYGGIISYDNSVKTGILGV
KRNTLDEFGAVSRETAKEMAEGALDALGVDYSISVTGIAGPGGGTPQKKVGLVYFGIGQKNEETEIHEHYFPFPRSSFRE
FAAHTGIYLLYDRLKRSA
>Mature_417_residues
SFPKVIVVSTGSELTAGRSQDTNSSWIANELFGMGFTVSKFVVLPDDPVVILEELRTLTELSMRETSILLVMTGGLGPTE
DDYTLEAVCRLKGVTTEESPVARQRIETFYKLRGRNFQEAMQTAIRQVFVPKGSIILNNSVGIAPGFITSLAENVHLGCM
PGVPGEMTEMFREELAPWILKTYSSRELYSGFRFIWWMSESQFQKEFISKEKAIADGKAIWGVAAKRGYIRASFQSDSRA
LVDDLLRKLDTFYGTKSTPDIFEELPRMLLEKKITIGTAESCTGGLIAKTFTDVPGSSAYFYGGIISYDNSVKTGILGVK
RNTLDEFGAVSRETAKEMAEGALDALGVDYSISVTGIAGPGGGTPQKKVGLVYFGIGQKNEETEIHEHYFPFPRSSFREF
AAHTGIYLLYDRLKRSA

Specific function: Unknown

COG id: COG1546

COG function: function code R; Uncharacterized protein (competence- and mitomycin-induced)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CinA family [H]

Homologues:

Organism=Escherichia coli, GI1789052, Length=151, Percent_Identity=39.7350993377483, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1787818, Length=142, Percent_Identity=29.5774647887324, Blast_Score=79, Evalue=7e-16,
Organism=Escherichia coli, GI1788583, Length=181, Percent_Identity=30.3867403314917, Blast_Score=78, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008136
- InterPro:   IPR008135
- InterPro:   IPR001453 [H]

Pfam domain/function: PF02464 CinA; PF00994 MoCF_biosynth [H]

EC number: NA

Molecular weight: Translated: 46187; Mature: 46056

Theoretical pI: Translated: 5.58; Mature: 5.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFPKVIVVSTGSELTAGRSQDTNSSWIANELFGMGFTVSKFVVLPDDPVVILEELRTLT
CCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCHHEEEECCCCCHHHHHHHHHHH
ELSMRETSILLVMTGGLGPTEDDYTLEAVCRLKGVTTEESPVARQRIETFYKLRGRNFQE
HHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHH
AMQTAIRQVFVPKGSIILNNSVGIAPGFITSLAENVHLGCMPGVPGEMTEMFREELAPWI
HHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHCCEEECCCCCCHHHHHHHHHHHHHHH
LKTYSSRELYSGFRFIWWMSESQFQKEFISKEKAIADGKAIWGVAAKRGYIRASFQSDSR
HHHCCCHHHHCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHHHHCCCEEEEECCCCCH
ALVDDLLRKLDTFYGTKSTPDIFEELPRMLLEKKITIGTAESCTGGLIAKTFTDVPGSSA
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCCE
YFYGGIISYDNSVKTGILGVKRNTLDEFGAVSRETAKEMAEGALDALGVDYSISVTGIAG
EEECCEEECCCCCCCCEEECCHHHHHHHHCHHHHHHHHHHHHHHHHCCCCEEEEEEEECC
PGGGTPQKKVGLVYFGIGQKNEETEIHEHYFPFPRSSFREFAAHTGIYLLYDRLKRSA
CCCCCCCCEEEEEEEECCCCCCCCHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHCC
>Mature Secondary Structure 
SFPKVIVVSTGSELTAGRSQDTNSSWIANELFGMGFTVSKFVVLPDDPVVILEELRTLT
CCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCHHEEEECCCCCHHHHHHHHHHH
ELSMRETSILLVMTGGLGPTEDDYTLEAVCRLKGVTTEESPVARQRIETFYKLRGRNFQE
HHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHH
AMQTAIRQVFVPKGSIILNNSVGIAPGFITSLAENVHLGCMPGVPGEMTEMFREELAPWI
HHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHCCEEECCCCCCHHHHHHHHHHHHHHH
LKTYSSRELYSGFRFIWWMSESQFQKEFISKEKAIADGKAIWGVAAKRGYIRASFQSDSR
HHHCCCHHHHCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHHHHCCCEEEEECCCCCH
ALVDDLLRKLDTFYGTKSTPDIFEELPRMLLEKKITIGTAESCTGGLIAKTFTDVPGSSA
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCCE
YFYGGIISYDNSVKTGILGVKRNTLDEFGAVSRETAKEMAEGALDALGVDYSISVTGIAG
EEECCEEECCCCCCCCEEECCHHHHHHHHCHHHHHHHHHHHHHHHHCCCCEEEEEEEECC
PGGGTPQKKVGLVYFGIGQKNEETEIHEHYFPFPRSSFREFAAHTGIYLLYDRLKRSA
CCCCCCCCEEEEEEEECCCCCCCCHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA