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The map label for this gene is yraR [H]

Identifier: 116327834

GI number: 116327834

Start: 1305775

End: 1306422

Strand: Direct

Name: yraR [H]

Synonym: LBL_1110

Alternate gene names: 116327834

Gene position: 1305775-1306422 (Clockwise)

Preceding gene: 116327824

Following gene: 116327842

Centisome position: 36.13

GC content: 40.9

Gene sequence:

>648_bases
ATGGCTCAGAAATTAGCGTTAGTCGCAGGTGCGACGGGTTTGATCGGAAAATATCTTTTGGAGGAATTATCCACTTCCCC
CGGATACCAAAAAGTATATGCACTCGTACGTAGACCGGTCGGCGTAGCCGGAGTTGAAGAAATTATTTCCGACTATTACG
CGTTAGTTGCTTCGATTCTTCCTCAAGGAATTACCGACGTATTTTGCAGTTTGGGAACCACGATTTCCAAAGCAGGAAGC
CGGGAAAATTTCAAAAAGGTGGATTATGAATATGTTTTGAAACTTGCTAAACTCGTAAAAGAAATAGGGGCAAAATCTTT
TTTTGTAGTTAGTGCTTTAGGAGCTAATCCAGGATCATTAGTATTTTATAATAGATTAAAAGGAGAGATGGAAAGGGATC
TGGAAAGTCTCGGCTTTTCTTTTCTTGGGGTTTTTAGACCTTCTTTATTAGAAGGAAAAAGGGAAGAAGTTCGTCCCGGT
GAAACGGTGGGTCAATTTTTTGCGAAAATTGTAAGTCCATTTCTTTTAGGAGGAATTAGAAAGTATAGATTGATTCATGG
GAGAACCGTCGCTAAAGCAATGATCCGTATCGCGGAAAAGGAGCCGACCGGAGTTCGTATTTTGGAGTCTGATCGAATTG
CAGCTTGA

Upstream 100 bases:

>100_bases
AGATCAATTCTTTCCGGAAAGAGAAATCGATTTTAAAAAAAATTCTTTTATAAAAAAGGGAGAAATGCATTCTTTTTGCA
TTTTGTAGGAGAGAGTAATT

Downstream 100 bases:

>100_bases
AAATTGACTTTGTTATATAGCACGAACTATGAACGTGTTTTACCACAAGGATGCGTTTCGTTGTATCGTAAGAATTCTCA
AGTTAGGAGCTTGTTTCTCC

Product: nucleoside-diphosphate-sugar epimerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 215; Mature: 214

Protein sequence:

>215_residues
MAQKLALVAGATGLIGKYLLEELSTSPGYQKVYALVRRPVGVAGVEEIISDYYALVASILPQGITDVFCSLGTTISKAGS
RENFKKVDYEYVLKLAKLVKEIGAKSFFVVSALGANPGSLVFYNRLKGEMERDLESLGFSFLGVFRPSLLEGKREEVRPG
ETVGQFFAKIVSPFLLGGIRKYRLIHGRTVAKAMIRIAEKEPTGVRILESDRIAA

Sequences:

>Translated_215_residues
MAQKLALVAGATGLIGKYLLEELSTSPGYQKVYALVRRPVGVAGVEEIISDYYALVASILPQGITDVFCSLGTTISKAGS
RENFKKVDYEYVLKLAKLVKEIGAKSFFVVSALGANPGSLVFYNRLKGEMERDLESLGFSFLGVFRPSLLEGKREEVRPG
ETVGQFFAKIVSPFLLGGIRKYRLIHGRTVAKAMIRIAEKEPTGVRILESDRIAA
>Mature_214_residues
AQKLALVAGATGLIGKYLLEELSTSPGYQKVYALVRRPVGVAGVEEIISDYYALVASILPQGITDVFCSLGTTISKAGSR
ENFKKVDYEYVLKLAKLVKEIGAKSFFVVSALGANPGSLVFYNRLKGEMERDLESLGFSFLGVFRPSLLEGKREEVRPGE
TVGQFFAKIVSPFLLGGIRKYRLIHGRTVAKAMIRIAEKEPTGVRILESDRIAA

Specific function: Unknown

COG id: COG0702

COG function: function code MG; Predicted nucleoside-diphosphate-sugar epimerases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To yeast YER004W [H]

Homologues:

Organism=Homo sapiens, GI148728172, Length=185, Percent_Identity=37.8378378378378, Blast_Score=96, Evalue=2e-20,
Organism=Homo sapiens, GI148728168, Length=185, Percent_Identity=37.8378378378378, Blast_Score=96, Evalue=2e-20,
Organism=Homo sapiens, GI148728164, Length=185, Percent_Identity=37.8378378378378, Blast_Score=96, Evalue=2e-20,
Organism=Homo sapiens, GI148728166, Length=185, Percent_Identity=37.8378378378378, Blast_Score=96, Evalue=2e-20,
Organism=Escherichia coli, GI87082218, Length=213, Percent_Identity=39.906103286385, Blast_Score=120, Evalue=9e-29,
Organism=Caenorhabditis elegans, GI71983631, Length=213, Percent_Identity=38.4976525821596, Blast_Score=128, Evalue=2e-30,
Organism=Saccharomyces cerevisiae, GI6320840, Length=184, Percent_Identity=33.695652173913, Blast_Score=81, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000534 [H]

Pfam domain/function: PF01118 Semialdhyde_dh [H]

EC number: NA

Molecular weight: Translated: 23496; Mature: 23365

Theoretical pI: Translated: 9.98; Mature: 9.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQKLALVAGATGLIGKYLLEELSTSPGYQKVYALVRRPVGVAGVEEIISDYYALVASIL
CCCHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
PQGITDVFCSLGTTISKAGSRENFKKVDYEYVLKLAKLVKEIGAKSFFVVSALGANPGSL
CCHHHHHHHHHHHHHHHCCCCCHHHHHCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCE
VFYNRLKGEMERDLESLGFSFLGVFRPSLLEGKREEVRPGETVGQFFAKIVSPFLLGGIR
EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHHHHHHH
KYRLIHGRTVAKAMIRIAEKEPTGVRILESDRIAA
HHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCC
>Mature Secondary Structure 
AQKLALVAGATGLIGKYLLEELSTSPGYQKVYALVRRPVGVAGVEEIISDYYALVASIL
CCHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
PQGITDVFCSLGTTISKAGSRENFKKVDYEYVLKLAKLVKEIGAKSFFVVSALGANPGSL
CCHHHHHHHHHHHHHHHCCCCCHHHHHCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCE
VFYNRLKGEMERDLESLGFSFLGVFRPSLLEGKREEVRPGETVGQFFAKIVSPFLLGGIR
EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHHHHHHH
KYRLIHGRTVAKAMIRIAEKEPTGVRILESDRIAA
HHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]