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The map label for this gene is dapB [H]

Identifier: 116327666

GI number: 116327666

Start: 1058613

End: 1059422

Strand: Direct

Name: dapB [H]

Synonym: LBL_0912

Alternate gene names: 116327666

Gene position: 1058613-1059422 (Clockwise)

Preceding gene: 116327665

Following gene: 116327667

Centisome position: 29.29

GC content: 46.79

Gene sequence:

>810_bases
ATGTCCGATTCCAAGTATCAGATTGCACTGATTGGAGGTTCTGGAAGAATGGGACGCGCCATCATCACGGTACTTTCTTC
CTCCAGCAAATCTACGCTTTCTTCTTCCGTAGTAAGCGGAGGTTCCGTATTTTTGGGAATGGACTCCGGACTACATTCCG
GAATCAAACAGAACGGAGTTAATTTTTCCTCCGATTTAGAGGCCGCAGTACGGAGCGCGGATTGTGTGATCGATTTCAGC
ACGTATCAGAATTTAGATTTTACGCTTAAGGCGTGTATTCAGCATCGAAAGCCGGTGGTAATCGGAACCACGGGTTTGAC
CGAACTCCAAAAGGATGCACTTAAAGTGGCCTCAAAAGAAATCGGAATCGTATATTCGCCGAACATGTCCATCGGAGTGA
ATTTACTTTTCAAGTTAACCGAAATCGCAGCCAAGGCAATGGGAGAAAACTCGGACATCGAAATCCAGGACATCCATCAC
CGTCATAAAAAGGACGCTCCGTCCGGAACCGCGGAAAAACTGAAGAGCATCCTACTCGAAACGTTAGGCAGAACTTCAAA
GAACGTGATCCACGGAAGGCACGGGATACTTAAAGAAAGAGACCCCAGGGAAATCGGAATTCACACATTCCGTGCCGGAG
AAGTGATCGGAGATCACACGGTTTATTTTTTTACTCCTGAAGAAAGGATCGAAATCACACACAGGGCCCAGGATCGGAAA
ACTTTTGCGGTGGGATCGATTCACGCAGCGGAGTTTTTAGTAGGACGTAAACCCGGATTGTACGATATGTTTGCGGTTTT
AGGATTGTAG

Upstream 100 bases:

>100_bases
CGGAGATACGGCTGCCTTTGACCCGACTTTCCCAAAATGAAACAAGCGTAAAATTCAAAAAGGCGCTCGAAGTACTGAAA
GAAAAAGGATACGAGTGAGA

Downstream 100 bases:

>100_bases
GTCGGGGATTACGGGTTGTTTTTCTTTAAGAATATATCACTTTTCCCGCTCGGGAAAAATCCGTTCGTCATCGTAATCGA
TATATTGATCGTCGGTTTTT

Product: dihydrodipicolinate reductase

Products: NA

Alternate protein names: DHPR [H]

Number of amino acids: Translated: 269; Mature: 268

Protein sequence:

>269_residues
MSDSKYQIALIGGSGRMGRAIITVLSSSSKSTLSSSVVSGGSVFLGMDSGLHSGIKQNGVNFSSDLEAAVRSADCVIDFS
TYQNLDFTLKACIQHRKPVVIGTTGLTELQKDALKVASKEIGIVYSPNMSIGVNLLFKLTEIAAKAMGENSDIEIQDIHH
RHKKDAPSGTAEKLKSILLETLGRTSKNVIHGRHGILKERDPREIGIHTFRAGEVIGDHTVYFFTPEERIEITHRAQDRK
TFAVGSIHAAEFLVGRKPGLYDMFAVLGL

Sequences:

>Translated_269_residues
MSDSKYQIALIGGSGRMGRAIITVLSSSSKSTLSSSVVSGGSVFLGMDSGLHSGIKQNGVNFSSDLEAAVRSADCVIDFS
TYQNLDFTLKACIQHRKPVVIGTTGLTELQKDALKVASKEIGIVYSPNMSIGVNLLFKLTEIAAKAMGENSDIEIQDIHH
RHKKDAPSGTAEKLKSILLETLGRTSKNVIHGRHGILKERDPREIGIHTFRAGEVIGDHTVYFFTPEERIEITHRAQDRK
TFAVGSIHAAEFLVGRKPGLYDMFAVLGL
>Mature_268_residues
SDSKYQIALIGGSGRMGRAIITVLSSSSKSTLSSSVVSGGSVFLGMDSGLHSGIKQNGVNFSSDLEAAVRSADCVIDFST
YQNLDFTLKACIQHRKPVVIGTTGLTELQKDALKVASKEIGIVYSPNMSIGVNLLFKLTEIAAKAMGENSDIEIQDIHHR
HKKDAPSGTAEKLKSILLETLGRTSKNVIHGRHGILKERDPREIGIHTFRAGEVIGDHTVYFFTPEERIEITHRAQDRKT
FAVGSIHAAEFLVGRKPGLYDMFAVLGL

Specific function: Biosynthesis of diaminopimelate and lysine from aspartate semialdehyde; second step. [C]

COG id: COG0289

COG function: function code E; Dihydrodipicolinate reductase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dihydrodipicolinate reductase family [H]

Homologues:

Organism=Escherichia coli, GI1786214, Length=270, Percent_Identity=41.8518518518518, Blast_Score=192, Evalue=2e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022663
- InterPro:   IPR000846
- InterPro:   IPR022664
- InterPro:   IPR011770
- InterPro:   IPR016040 [H]

Pfam domain/function: PF05173 DapB_C; PF01113 DapB_N [H]

EC number: =1.3.1.26 [H]

Molecular weight: Translated: 29181; Mature: 29050

Theoretical pI: Translated: 9.05; Mature: 9.05

Prosite motif: PS01298 DAPB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDSKYQIALIGGSGRMGRAIITVLSSSSKSTLSSSVVSGGSVFLGMDSGLHSGIKQNGV
CCCCCEEEEEEECCCCCCHHHHEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHCCC
NFSSDLEAAVRSADCVIDFSTYQNLDFTLKACIQHRKPVVIGTTGLTELQKDALKVASKE
CCCHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHH
IGIVYSPNMSIGVNLLFKLTEIAAKAMGENSDIEIQDIHHRHKKDAPSGTAEKLKSILLE
CCEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHCCCCCCCHHHHHHHHHHH
TLGRTSKNVIHGRHGILKERDPREIGIHTFRAGEVIGDHTVYFFTPEERIEITHRAQDRK
HHCCCHHHHHCCCCCCCCCCCCHHHCEEEEECCCEECCCEEEEECCHHHEEEEECCCCCC
TFAVGSIHAAEFLVGRKPGLYDMFAVLGL
EEEECCHHHHHHHHCCCCCHHHHHHHHCC
>Mature Secondary Structure 
SDSKYQIALIGGSGRMGRAIITVLSSSSKSTLSSSVVSGGSVFLGMDSGLHSGIKQNGV
CCCCEEEEEEECCCCCCHHHHEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHCCC
NFSSDLEAAVRSADCVIDFSTYQNLDFTLKACIQHRKPVVIGTTGLTELQKDALKVASKE
CCCHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHH
IGIVYSPNMSIGVNLLFKLTEIAAKAMGENSDIEIQDIHHRHKKDAPSGTAEKLKSILLE
CCEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHCCCCCCCHHHHHHHHHHH
TLGRTSKNVIHGRHGILKERDPREIGIHTFRAGEVIGDHTVYFFTPEERIEITHRAQDRK
HHCCCHHHHHCCCCCCCCCCCCHHHCEEEEECCCEECCCEEEEECCHHHEEEEECCCCCC
TFAVGSIHAAEFLVGRKPGLYDMFAVLGL
EEEECCHHHHHHHHCCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA