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The map label for this gene is yahD [C]

Identifier: 116327610

GI number: 116327610

Start: 977516

End: 978478

Strand: Reverse

Name: yahD [C]

Synonym: LBL_0842

Alternate gene names: 116327610

Gene position: 978478-977516 (Counterclockwise)

Preceding gene: 116327617

Following gene: 116327607

Centisome position: 27.07

GC content: 44.03

Gene sequence:

>963_bases
ATGATTTTAAGAATTCATAAAATCCAATGTCTCCTTTTAATCGTTCCGCTTCTTCTATGGGCCGACCCGACTTTGGACAG
CGAGTTTTTACGATCCGTCCAGGAAGGAGATCCTAAAAAAACGCAACTTTTAATCCAAGCGGGGGCTTCCGTAGACGCTA
CCGATTCCAGAGGCAAAACGGCTTTGATGCTCGCGGATCACAGGCCCGAAGTCGCGGAAGTTCTAATTCGCGCGGGAGCC
AACGTAAACGCCCAGGATAAAGATGGAAGTTCCGTACTGATGGAAAGTTTATCCGGACTTTTCGATGTGAAAGTTTTAGA
CATAGACGACCTCGCGGTACCGAAACGATTGATCGAATCCGGAGCTAAATTGGAATATCTTTCCAAGGTAGATGCAACAA
AAACTCTTCCCGTTTCAATTTTAAATGTGGCGATTCGTCACGGAAATATAGTGCTTGTGCAGTTTTTAGTAGAGAACCAG
GCCGATGTAAACTTCGATAAGGGAAATCCGGAAGAATTTCCTCTTTTTCTCGCGTGTGGAGCCGGTTCGTCTTCGGCAAA
TTTTTCAATTGTAGAATTTCTTTTGAAAAACAACGCAAAGGCGGATTATACGAGCCGCCTTCATGACAAGAGTCAAGATG
GAAAACTGATCCAAGCCGGAGTCGACAACGCGCTTCATTTTCTTTCGGAAGAATCCGATATCGATCCGCGAATCCCAGAA
CTTCTCGTAAAAAACGGAACGAACGTAAATCATAGGAACGCGGAAGGAATCACCCCGCTTTTAAAAGCCATTCTCAAAAG
GAGAATAGCCTTATCCGAAAAATTACTCGAACTAGGAGCCGATCCGAACATTTCGGATACGCAGGGAAGAACCCCTCTAG
AAGAAGTAAGAAAACAAAAACTGACCGACTTGGAAACCTTGATTTTGAAAAAAAACAGGACAAACGAAAAAATTCCTCAG
TAG

Upstream 100 bases:

>100_bases
GAGAGCATTTTCAGATTCCTATAAAAAGTGGATTTCAAAAATGTGGATACCACACATAAAAAATCCGATTTAATACAGTA
GAGGGTTTATCAAGATTACG

Downstream 100 bases:

>100_bases
TTTTTTAGAACTTGTCCCAAAACCTGAAAAGAAATCAGCACAATCGTTTCATAAGTTCGTAATAGAGCGTGGAAATTCCC
GCAAATTGGTGATTTATGGT

Product: ankyrin repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 320; Mature: 320

Protein sequence:

>320_residues
MILRIHKIQCLLLIVPLLLWADPTLDSEFLRSVQEGDPKKTQLLIQAGASVDATDSRGKTALMLADHRPEVAEVLIRAGA
NVNAQDKDGSSVLMESLSGLFDVKVLDIDDLAVPKRLIESGAKLEYLSKVDATKTLPVSILNVAIRHGNIVLVQFLVENQ
ADVNFDKGNPEEFPLFLACGAGSSSANFSIVEFLLKNNAKADYTSRLHDKSQDGKLIQAGVDNALHFLSEESDIDPRIPE
LLVKNGTNVNHRNAEGITPLLKAILKRRIALSEKLLELGADPNISDTQGRTPLEEVRKQKLTDLETLILKKNRTNEKIPQ

Sequences:

>Translated_320_residues
MILRIHKIQCLLLIVPLLLWADPTLDSEFLRSVQEGDPKKTQLLIQAGASVDATDSRGKTALMLADHRPEVAEVLIRAGA
NVNAQDKDGSSVLMESLSGLFDVKVLDIDDLAVPKRLIESGAKLEYLSKVDATKTLPVSILNVAIRHGNIVLVQFLVENQ
ADVNFDKGNPEEFPLFLACGAGSSSANFSIVEFLLKNNAKADYTSRLHDKSQDGKLIQAGVDNALHFLSEESDIDPRIPE
LLVKNGTNVNHRNAEGITPLLKAILKRRIALSEKLLELGADPNISDTQGRTPLEEVRKQKLTDLETLILKKNRTNEKIPQ
>Mature_320_residues
MILRIHKIQCLLLIVPLLLWADPTLDSEFLRSVQEGDPKKTQLLIQAGASVDATDSRGKTALMLADHRPEVAEVLIRAGA
NVNAQDKDGSSVLMESLSGLFDVKVLDIDDLAVPKRLIESGAKLEYLSKVDATKTLPVSILNVAIRHGNIVLVQFLVENQ
ADVNFDKGNPEEFPLFLACGAGSSSANFSIVEFLLKNNAKADYTSRLHDKSQDGKLIQAGVDNALHFLSEESDIDPRIPE
LLVKNGTNVNHRNAEGITPLLKAILKRRIALSEKLLELGADPNISDTQGRTPLEEVRKQKLTDLETLILKKNRTNEKIPQ

Specific function: Unknown

COG id: COG0666

COG function: function code R; FOG: Ankyrin repeat

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 18 ANK repeats [H]

Homologues:

Organism=Homo sapiens, GI268607595, Length=269, Percent_Identity=29.368029739777, Blast_Score=76, Evalue=5e-14,
Organism=Homo sapiens, GI62988328, Length=269, Percent_Identity=29.368029739777, Blast_Score=76, Evalue=5e-14,
Organism=Homo sapiens, GI52426737, Length=273, Percent_Identity=28.5714285714286, Blast_Score=72, Evalue=9e-13,
Organism=Homo sapiens, GI188595682, Length=273, Percent_Identity=28.5714285714286, Blast_Score=72, Evalue=9e-13,
Organism=Homo sapiens, GI52426735, Length=273, Percent_Identity=28.2051282051282, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI46519147, Length=278, Percent_Identity=29.136690647482, Blast_Score=67, Evalue=3e-11,
Organism=Homo sapiens, GI37620163, Length=278, Percent_Identity=29.136690647482, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI24233530, Length=299, Percent_Identity=28.7625418060201, Blast_Score=65, Evalue=6e-11,
Organism=Homo sapiens, GI67906195, Length=269, Percent_Identity=28.996282527881, Blast_Score=65, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI17542700, Length=273, Percent_Identity=27.4725274725275, Blast_Score=64, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI25145251, Length=273, Percent_Identity=27.4725274725275, Blast_Score=64, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI71981389, Length=273, Percent_Identity=27.4725274725275, Blast_Score=64, Evalue=1e-10,
Organism=Drosophila melanogaster, GI21356741, Length=262, Percent_Identity=33.206106870229, Blast_Score=82, Evalue=5e-16,
Organism=Drosophila melanogaster, GI161082089, Length=287, Percent_Identity=28.5714285714286, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI281359521, Length=271, Percent_Identity=28.7822878228782, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI281359519, Length=271, Percent_Identity=28.7822878228782, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI28558752, Length=271, Percent_Identity=28.7822878228782, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI28558750, Length=271, Percent_Identity=28.7822878228782, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI28558756, Length=271, Percent_Identity=28.7822878228782, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI28558754, Length=271, Percent_Identity=28.7822878228782, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI161082085, Length=287, Percent_Identity=28.5714285714286, Blast_Score=66, Evalue=4e-11,
Organism=Drosophila melanogaster, GI161082099, Length=287, Percent_Identity=28.5714285714286, Blast_Score=66, Evalue=4e-11,
Organism=Drosophila melanogaster, GI161082110, Length=287, Percent_Identity=28.5714285714286, Blast_Score=64, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002110
- InterPro:   IPR020683
- InterPro:   IPR007685 [H]

Pfam domain/function: PF00023 Ank; PF04607 RelA_SpoT [H]

EC number: NA

Molecular weight: Translated: 35173; Mature: 35173

Theoretical pI: Translated: 5.72; Mature: 5.72

Prosite motif: PS50088 ANK_REPEAT ; PS50297 ANK_REP_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILRIHKIQCLLLIVPLLLWADPTLDSEFLRSVQEGDPKKTQLLIQAGASVDATDSRGKT
CEEEEHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHEEEEECCCCCCCCCCCCCE
ALMLADHRPEVAEVLIRAGANVNAQDKDGSSVLMESLSGLFDVKVLDIDDLAVPKRLIES
EEEEECCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCHHEEEEECCCHHHHHHHHHHC
GAKLEYLSKVDATKTLPVSILNVAIRHGNIVLVQFLVENQADVNFDKGNPEEFPLFLACG
CCCCHHHHHCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEEC
AGSSSANFSIVEFLLKNNAKADYTSRLHDKSQDGKLIQAGVDNALHFLSEESDIDPRIPE
CCCCCCCHHHHHHHHHCCCCCHHHHHHHCCCCCCCEEEHHHHHHHHHHCCCCCCCCCHHH
LLVKNGTNVNHRNAEGITPLLKAILKRRIALSEKLLELGADPNISDTQGRTPLEEVRKQK
HHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH
LTDLETLILKKNRTNEKIPQ
HHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MILRIHKIQCLLLIVPLLLWADPTLDSEFLRSVQEGDPKKTQLLIQAGASVDATDSRGKT
CEEEEHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHEEEEECCCCCCCCCCCCCE
ALMLADHRPEVAEVLIRAGANVNAQDKDGSSVLMESLSGLFDVKVLDIDDLAVPKRLIES
EEEEECCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCHHEEEEECCCHHHHHHHHHHC
GAKLEYLSKVDATKTLPVSILNVAIRHGNIVLVQFLVENQADVNFDKGNPEEFPLFLACG
CCCCHHHHHCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEEC
AGSSSANFSIVEFLLKNNAKADYTSRLHDKSQDGKLIQAGVDNALHFLSEESDIDPRIPE
CCCCCCCHHHHHHHHHCCCCCHHHHHHHCCCCCCCEEEHHHHHHHHHHCCCCCCCCCHHH
LLVKNGTNVNHRNAEGITPLLKAILKRRIALSEKLLELGADPNISDTQGRTPLEEVRKQK
HHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH
LTDLETLILKKNRTNEKIPQ
HHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA