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The map label for this gene is glcD [H]

Identifier: 116327539

GI number: 116327539

Start: 873153

End: 874565

Strand: Reverse

Name: glcD [H]

Synonym: LBL_0768

Alternate gene names: 116327539

Gene position: 874565-873153 (Counterclockwise)

Preceding gene: 116327540

Following gene: 116327538

Centisome position: 24.2

GC content: 42.75

Gene sequence:

>1413_bases
ATGACCACAATCAACAAATCGGAACTCAAATCCCTAATCGGCCCCGGAAAGATATTTTTTAGAAACGATCCGGACTTTGA
CGAAACGACCTTTCTTTCTTTCGGAACGGACAGAACCAAGGTTTATAAACCCGATTTCGACATTCTCGCTTTTCCGTCCA
CAACGGAAGAAGTTGCAAAAATCGTAAAGTATGCCTACAAAAACGAGATTTCGATCGTTCCCTCCGGAGGAAGAACCGGA
TACGCAGGCGGAGCGATCGCAAAAAATAAGGAGTTGGTTCTTTCCCTTTCTAAAATGGACAAGGTCTTAGACTTCGATCC
TTTTTTCGGAAGTATCAAAGTTCAAGCGGGTATGATCACTAAAAATCTTCACAAGGAAGTCGAAGAAAGAGATTTTTATT
TTCCGGTGGACTTTGCGTCCACCGGCTCCTCCCATATCGGAGGAAACATCGCCACAAACGCGGGCGGAGTCAGAGTCGTC
CACTACGGCCTGATTCGTCAATGGGTGTTAGGACTCACCGTTGTTACGGGGACCGGAGAAATTTTAGAATTCAACGGAGA
GTTACTCAAAAATAATACGGGGTACGATCTTAAACAATTATTCATCGGCTCGGAAGGAACATTAGGCGTTATTACCGAAG
CGACCCTAAAGTTAACGGCAAAACCTCTGGACAACCGAGTTTTACTCGTGGCGGTTCCCGACTTTTCCTCTATTCTTTCT
TTATTCAAAGAAACACACCGGGTCAAGGTTCCTTTGCTTGCATTCGAATTTTTTACCGAATACTGTCTCGGAAAGGTGAA
GGCCCATCTTGGAATTCCGGATCCGTTTCAATCTCCGAACCCATATTACGTTTTGATGGAATTCGAGATTGCGGACGAAT
CCGATAACGAAAAGCTGTTCGGTTTTTTGGAAACAATCACGGAAAAAGGTCTGATCACCGACGGGAGTATAGCGCAAAAC
TCCAGACAATCGGAAACGTTTTGGAAATACAGAGAAGGAATCAGCGAAAGTATCTCCATAGAATATACGGTTCATAAAAA
CGACATTTCTCTTCCTTTGAGAAACATGGAACCGTTTCTTGCCGATATGGAAACTCTGTTAAACGGAGAATATCCAGGTT
TTGAAATCGCTCTTTTCGGCCACGTGGGAGACGGAAATCTCCACTTGAACATCGTAAAACCGAAAGATCTTTCCAACGAG
GATTTTTTCAAAAAATGTAAGAATGTGGATCCGGATATGTTTCGTTTATTACAAAAATATCATGGATCGATCAGTGCGGA
ACATGGAATCGGGCTTTTAAAAAAAGATTTTCTCCATTTTTCCAGAACCCAGGCGGAGATTCTCTTGATGAAAGAAATCA
AAAAATCCATGGACCCTAAAAATATCATGAATCCGGGCAAAGTGTTCCAATGA

Upstream 100 bases:

>100_bases
GATGGACATTATATAAAAAGAATATTAGAAAAGGGTGAAAAACCGGTGGATTCCCAAATCGAAAGAATGACTTTCGCGGA
ATAAAATCTCAAAAACAAAC

Downstream 100 bases:

>100_bases
TTTCCACAAACGGTTCCGGCGGTAAAAAACCGAGTAAGAAAAAAAGAAAGATTCAATCCGAGCACAGGATTGTTATGCGA
AGTCTTACTCTGGAAGATTA

Product: FAD/FMN-containing dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 470; Mature: 469

Protein sequence:

>470_residues
MTTINKSELKSLIGPGKIFFRNDPDFDETTFLSFGTDRTKVYKPDFDILAFPSTTEEVAKIVKYAYKNEISIVPSGGRTG
YAGGAIAKNKELVLSLSKMDKVLDFDPFFGSIKVQAGMITKNLHKEVEERDFYFPVDFASTGSSHIGGNIATNAGGVRVV
HYGLIRQWVLGLTVVTGTGEILEFNGELLKNNTGYDLKQLFIGSEGTLGVITEATLKLTAKPLDNRVLLVAVPDFSSILS
LFKETHRVKVPLLAFEFFTEYCLGKVKAHLGIPDPFQSPNPYYVLMEFEIADESDNEKLFGFLETITEKGLITDGSIAQN
SRQSETFWKYREGISESISIEYTVHKNDISLPLRNMEPFLADMETLLNGEYPGFEIALFGHVGDGNLHLNIVKPKDLSNE
DFFKKCKNVDPDMFRLLQKYHGSISAEHGIGLLKKDFLHFSRTQAEILLMKEIKKSMDPKNIMNPGKVFQ

Sequences:

>Translated_470_residues
MTTINKSELKSLIGPGKIFFRNDPDFDETTFLSFGTDRTKVYKPDFDILAFPSTTEEVAKIVKYAYKNEISIVPSGGRTG
YAGGAIAKNKELVLSLSKMDKVLDFDPFFGSIKVQAGMITKNLHKEVEERDFYFPVDFASTGSSHIGGNIATNAGGVRVV
HYGLIRQWVLGLTVVTGTGEILEFNGELLKNNTGYDLKQLFIGSEGTLGVITEATLKLTAKPLDNRVLLVAVPDFSSILS
LFKETHRVKVPLLAFEFFTEYCLGKVKAHLGIPDPFQSPNPYYVLMEFEIADESDNEKLFGFLETITEKGLITDGSIAQN
SRQSETFWKYREGISESISIEYTVHKNDISLPLRNMEPFLADMETLLNGEYPGFEIALFGHVGDGNLHLNIVKPKDLSNE
DFFKKCKNVDPDMFRLLQKYHGSISAEHGIGLLKKDFLHFSRTQAEILLMKEIKKSMDPKNIMNPGKVFQ
>Mature_469_residues
TTINKSELKSLIGPGKIFFRNDPDFDETTFLSFGTDRTKVYKPDFDILAFPSTTEEVAKIVKYAYKNEISIVPSGGRTGY
AGGAIAKNKELVLSLSKMDKVLDFDPFFGSIKVQAGMITKNLHKEVEERDFYFPVDFASTGSSHIGGNIATNAGGVRVVH
YGLIRQWVLGLTVVTGTGEILEFNGELLKNNTGYDLKQLFIGSEGTLGVITEATLKLTAKPLDNRVLLVAVPDFSSILSL
FKETHRVKVPLLAFEFFTEYCLGKVKAHLGIPDPFQSPNPYYVLMEFEIADESDNEKLFGFLETITEKGLITDGSIAQNS
RQSETFWKYREGISESISIEYTVHKNDISLPLRNMEPFLADMETLLNGEYPGFEIALFGHVGDGNLHLNIVKPKDLSNED
FFKKCKNVDPDMFRLLQKYHGSISAEHGIGLLKKDFLHFSRTQAEILLMKEIKKSMDPKNIMNPGKVFQ

Specific function: Unknown

COG id: COG0277

COG function: function code C; FAD/FMN-containing dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 FAD-binding PCMH-type domain [H]

Homologues:

Organism=Homo sapiens, GI119964728, Length=473, Percent_Identity=36.9978858350951, Blast_Score=313, Evalue=2e-85,
Organism=Homo sapiens, GI37595756, Length=430, Percent_Identity=27.6744186046512, Blast_Score=179, Evalue=4e-45,
Organism=Homo sapiens, GI37595754, Length=453, Percent_Identity=26.2693156732892, Blast_Score=170, Evalue=3e-42,
Organism=Homo sapiens, GI4501993, Length=208, Percent_Identity=31.25, Blast_Score=100, Evalue=5e-21,
Organism=Escherichia coli, GI1789351, Length=444, Percent_Identity=28.6036036036036, Blast_Score=159, Evalue=5e-40,
Organism=Escherichia coli, GI1787977, Length=523, Percent_Identity=24.6653919694073, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI48994914, Length=158, Percent_Identity=29.1139240506329, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI48994907, Length=221, Percent_Identity=24.8868778280543, Blast_Score=68, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17534361, Length=438, Percent_Identity=34.9315068493151, Blast_Score=260, Evalue=8e-70,
Organism=Caenorhabditis elegans, GI71992373, Length=470, Percent_Identity=27.0212765957447, Blast_Score=165, Evalue=4e-41,
Organism=Caenorhabditis elegans, GI71992381, Length=470, Percent_Identity=26.3829787234043, Blast_Score=154, Evalue=8e-38,
Organism=Caenorhabditis elegans, GI71992392, Length=378, Percent_Identity=27.5132275132275, Blast_Score=139, Evalue=4e-33,
Organism=Caenorhabditis elegans, GI17556096, Length=203, Percent_Identity=28.5714285714286, Blast_Score=96, Evalue=6e-20,
Organism=Saccharomyces cerevisiae, GI6320023, Length=451, Percent_Identity=37.0288248337029, Blast_Score=298, Evalue=1e-81,
Organism=Saccharomyces cerevisiae, GI6320764, Length=446, Percent_Identity=35.8744394618834, Blast_Score=280, Evalue=3e-76,
Organism=Saccharomyces cerevisiae, GI6320027, Length=437, Percent_Identity=27.4599542334096, Blast_Score=163, Evalue=5e-41,
Organism=Drosophila melanogaster, GI18921117, Length=429, Percent_Identity=37.0629370629371, Blast_Score=267, Evalue=1e-71,
Organism=Drosophila melanogaster, GI24639277, Length=429, Percent_Identity=37.0629370629371, Blast_Score=267, Evalue=1e-71,
Organism=Drosophila melanogaster, GI24639275, Length=429, Percent_Identity=37.0629370629371, Blast_Score=267, Evalue=1e-71,
Organism=Drosophila melanogaster, GI24653753, Length=208, Percent_Identity=28.3653846153846, Blast_Score=88, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016166
- InterPro:   IPR016167
- InterPro:   IPR016164
- InterPro:   IPR016168
- InterPro:   IPR004113
- InterPro:   IPR004490
- InterPro:   IPR006094
- InterPro:   IPR016171 [H]

Pfam domain/function: PF02913 FAD-oxidase_C; PF01565 FAD_binding_4 [H]

EC number: NA

Molecular weight: Translated: 52624; Mature: 52493

Theoretical pI: Translated: 6.00; Mature: 6.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTINKSELKSLIGPGKIFFRNDPDFDETTFLSFGTDRTKVYKPDFDILAFPSTTEEVAK
CCCCCHHHHHHHCCCCEEEECCCCCCCCEEEEEECCCCCEEECCCCCEEECCCCHHHHHH
IVKYAYKNEISIVPSGGRTGYAGGAIAKNKELVLSLSKMDKVLDFDPFFGSIKVQAGMIT
HHHHHHCCCEEEEECCCCCCCCCCCCCCCCHHEEEHHHHHHHHCCCCCCCCEEEEECHHH
KNLHKEVEERDFYFPVDFASTGSSHIGGNIATNAGGVRVVHYGLIRQWVLGLTVVTGTGE
HHHHHHHHHCCCEEEEECCCCCCCCCCCEEEECCCCEEEEHHHHHHHHHHHEEEEECCCC
ILEFNGELLKNNTGYDLKQLFIGSEGTLGVITEATLKLTAKPLDNRVLLVAVPDFSSILS
EEEECCCEECCCCCCCHHHEEECCCCCEEEEEEEEEEEEECCCCCCEEEEECCCHHHHHH
LFKETHRVKVPLLAFEFFTEYCLGKVKAHLGIPDPFQSPNPYYVLMEFEIADESDNEKLF
HHHHHHCEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEECCCCCCHHHH
GFLETITEKGLITDGSIAQNSRQSETFWKYREGISESISIEYTVHKNDISLPLRNMEPFL
HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHCCCHHH
ADMETLLNGEYPGFEIALFGHVGDGNLHLNIVKPKDLSNEDFFKKCKNVDPDMFRLLQKY
HHHHHHHCCCCCCEEEEEEEEECCCEEEEEEECCCCCCCHHHHHHHCCCCHHHHHHHHHH
HGSISAEHGIGLLKKDFLHFSRTQAEILLMKEIKKSMDPKNIMNPGKVFQ
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCC
>Mature Secondary Structure 
TTINKSELKSLIGPGKIFFRNDPDFDETTFLSFGTDRTKVYKPDFDILAFPSTTEEVAK
CCCCHHHHHHHCCCCEEEECCCCCCCCEEEEEECCCCCEEECCCCCEEECCCCHHHHHH
IVKYAYKNEISIVPSGGRTGYAGGAIAKNKELVLSLSKMDKVLDFDPFFGSIKVQAGMIT
HHHHHHCCCEEEEECCCCCCCCCCCCCCCCHHEEEHHHHHHHHCCCCCCCCEEEEECHHH
KNLHKEVEERDFYFPVDFASTGSSHIGGNIATNAGGVRVVHYGLIRQWVLGLTVVTGTGE
HHHHHHHHHCCCEEEEECCCCCCCCCCCEEEECCCCEEEEHHHHHHHHHHHEEEEECCCC
ILEFNGELLKNNTGYDLKQLFIGSEGTLGVITEATLKLTAKPLDNRVLLVAVPDFSSILS
EEEECCCEECCCCCCCHHHEEECCCCCEEEEEEEEEEEEECCCCCCEEEEECCCHHHHHH
LFKETHRVKVPLLAFEFFTEYCLGKVKAHLGIPDPFQSPNPYYVLMEFEIADESDNEKLF
HHHHHHCEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEECCCCCCHHHH
GFLETITEKGLITDGSIAQNSRQSETFWKYREGISESISIEYTVHKNDISLPLRNMEPFL
HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHCCCHHH
ADMETLLNGEYPGFEIALFGHVGDGNLHLNIVKPKDLSNEDFFKKCKNVDPDMFRLLQKY
HHHHHHHCCCCCCEEEEEEEEECCCEEEEEEECCCCCCCHHHHHHHCCCCHHHHHHHHHH
HGSISAEHGIGLLKKDFLHFSRTQAEILLMKEIKKSMDPKNIMNPGKVFQ
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]