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The map label for this gene is ddpA [H]

Identifier: 116327213

GI number: 116327213

Start: 469319

End: 470872

Strand: Direct

Name: ddpA [H]

Synonym: LBL_0401

Alternate gene names: 116327213

Gene position: 469319-470872 (Clockwise)

Preceding gene: 116327209

Following gene: 116327217

Centisome position: 12.98

GC content: 41.57

Gene sequence:

>1554_bases
TTGGACAGGTTTAGTCTTTTGAATACTTCTCTAACCTTTTTTGCAGGAATCCTTGTTTTGTCCTTTCTTTTTTCCGATTG
CGGTTTCAGGGAGGAGGACCCGGAAGAATTGATTCTTTCCATACCTTCGGACCCAATTAGTTTGGACCCGTTATTTTCCA
CTGATTTATCTTCCCGTACTGTCGGAAAATTTTTATATCCATTTTTATTTCAAAAAACTCCGGAAGGTAAGCCCGCATAT
CAACTCGTCGAATCGTTTCGCTTGTTCGGTACAGGAGAAGTCCGTTCTCTCAAACTTAAACTCAGATCGCATCTTTTATC
CAACGGCGAAGAATTAAGAGCGGGACAAGTTCGAGAATCTCTACTCAGACTCATAACCACTCCCAGTCCGAGAAAAAATC
AATACGAATTTATTAAAGAAATCAACGTTCTCGGTCCAAAGGAAATTGAACTGAAAATCTCCGGAGGACTCAGACAGGCA
ATAGACGCTCTCTCCCTTCCTCCCGCCGGAATTGTTTGTTGCATAAACGGGGACGATAAAAAATTGAAAGCGGATTCTTT
TGAAACATTAGAAAAAAACGATATAAATTCGATTCCAAAAGCGGGTAAATACCTTCTTAAAGAATGGAAAAAGAATAATT
ACGTCCTTCTTGAAAAAAATCCGTACACAATCGAAGACCTTCCTAAAAGAATTCGACTAAGGATCTTAGCGTCGGCTTCC
ACCGGAATTTTTTTGTTTTCCAAGGGAAAGATGGATCTGATGCGTCTGCCGAATTTTCTACTCAAAAACCCTCATATCAA
AAAGGAGAATCTCCGGTTTCGGAAAGGACAAGGAGTTCAATATATCGCAATTCGGGCAAAGGAGCCTTGTTTCGACGAGA
ACTTTAGAAAAGCCTTAAATACGGTCGTTGACCCGAACCTAGTGATCCGAAAATTGTTGGAGGGGAATGCCGATCCCACA
TTCGGTCCGGTTCCACCCGGAAGCATATCACAAACGAAGATGCGGAAAATTATCTCGGAAAATCCAGAAATTCTTTCGAT
ACAAACTCATTCTCGGGAGAAGGCCGAGGAATACTTGAAAAAGTCCATTTGTTATCCGGCAATACTCGAAAAAGAAATCG
ATTTTAGAATGCGCGGCGACGAGGAAAATAACGCGAATGGGTTGGCGTTGGCGGGATTTTTAAGAGAACTCGGATTGAAA
ATAAAAATCCGCCCGATGGAAAAAGTGATCCTTTATAAGGAAAACGCGGAAGGTAAAGGTGATCTAACGTTGCTTTTTTG
GTACGCGGATTTACCCGGAGCCTGGCACTTTATCGATCCGCTGTTTTCAGGAAAGGACAAAGGCAACGGAGGAAACCGAG
CGCACTACGAAAATCAGGAACTCGAAGCTATAATCTCGAGAGCGCGAAATTTGGATTCCTTGAATTCGGAAACGACCAAA
GCTTTGCAAATTCTTCTCAGAGAAAATCCTTGGATTTATCTTTGGTCACCGCATGAGACTTTTCTAATATCTGAAAAGGG
AAAACGTTATTCTAATTTGGAGGATTATCTGTAA

Upstream 100 bases:

>100_bases
GCCCCATTTAAAACCGAAACGAAAAAGGAGAGTACGATTCCCGAAATTAATCTGTATTTGTACTTGAAGGAATACTTTAG
GAGCCGTTTATAGATGTTCA

Downstream 100 bases:

>100_bases
CTTCCGGAAGTTCAAGTTCGACAGAATCCGCGTCGCTCTCTTCCCCTTGAGGAAGAATCGTTTTTTCGGTAGTAACCGTC
TCCGACTTTTGTGTGAAATT

Product: substrate binding protein of an ABC transporter complex

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 517; Mature: 517

Protein sequence:

>517_residues
MDRFSLLNTSLTFFAGILVLSFLFSDCGFREEDPEELILSIPSDPISLDPLFSTDLSSRTVGKFLYPFLFQKTPEGKPAY
QLVESFRLFGTGEVRSLKLKLRSHLLSNGEELRAGQVRESLLRLITTPSPRKNQYEFIKEINVLGPKEIELKISGGLRQA
IDALSLPPAGIVCCINGDDKKLKADSFETLEKNDINSIPKAGKYLLKEWKKNNYVLLEKNPYTIEDLPKRIRLRILASAS
TGIFLFSKGKMDLMRLPNFLLKNPHIKKENLRFRKGQGVQYIAIRAKEPCFDENFRKALNTVVDPNLVIRKLLEGNADPT
FGPVPPGSISQTKMRKIISENPEILSIQTHSREKAEEYLKKSICYPAILEKEIDFRMRGDEENNANGLALAGFLRELGLK
IKIRPMEKVILYKENAEGKGDLTLLFWYADLPGAWHFIDPLFSGKDKGNGGNRAHYENQELEAIISRARNLDSLNSETTK
ALQILLRENPWIYLWSPHETFLISEKGKRYSNLEDYL

Sequences:

>Translated_517_residues
MDRFSLLNTSLTFFAGILVLSFLFSDCGFREEDPEELILSIPSDPISLDPLFSTDLSSRTVGKFLYPFLFQKTPEGKPAY
QLVESFRLFGTGEVRSLKLKLRSHLLSNGEELRAGQVRESLLRLITTPSPRKNQYEFIKEINVLGPKEIELKISGGLRQA
IDALSLPPAGIVCCINGDDKKLKADSFETLEKNDINSIPKAGKYLLKEWKKNNYVLLEKNPYTIEDLPKRIRLRILASAS
TGIFLFSKGKMDLMRLPNFLLKNPHIKKENLRFRKGQGVQYIAIRAKEPCFDENFRKALNTVVDPNLVIRKLLEGNADPT
FGPVPPGSISQTKMRKIISENPEILSIQTHSREKAEEYLKKSICYPAILEKEIDFRMRGDEENNANGLALAGFLRELGLK
IKIRPMEKVILYKENAEGKGDLTLLFWYADLPGAWHFIDPLFSGKDKGNGGNRAHYENQELEAIISRARNLDSLNSETTK
ALQILLRENPWIYLWSPHETFLISEKGKRYSNLEDYL
>Mature_517_residues
MDRFSLLNTSLTFFAGILVLSFLFSDCGFREEDPEELILSIPSDPISLDPLFSTDLSSRTVGKFLYPFLFQKTPEGKPAY
QLVESFRLFGTGEVRSLKLKLRSHLLSNGEELRAGQVRESLLRLITTPSPRKNQYEFIKEINVLGPKEIELKISGGLRQA
IDALSLPPAGIVCCINGDDKKLKADSFETLEKNDINSIPKAGKYLLKEWKKNNYVLLEKNPYTIEDLPKRIRLRILASAS
TGIFLFSKGKMDLMRLPNFLLKNPHIKKENLRFRKGQGVQYIAIRAKEPCFDENFRKALNTVVDPNLVIRKLLEGNADPT
FGPVPPGSISQTKMRKIISENPEILSIQTHSREKAEEYLKKSICYPAILEKEIDFRMRGDEENNANGLALAGFLRELGLK
IKIRPMEKVILYKENAEGKGDLTLLFWYADLPGAWHFIDPLFSGKDKGNGGNRAHYENQELEAIISRARNLDSLNSETTK
ALQILLRENPWIYLWSPHETFLISEKGKRYSNLEDYL

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport [H]

COG id: COG0747

COG function: function code E; ABC-type dipeptide transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787762, Length=531, Percent_Identity=21.8455743879473, Blast_Score=89, Evalue=6e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 58917; Mature: 58917

Theoretical pI: Translated: 9.23; Mature: 9.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRFSLLNTSLTFFAGILVLSFLFSDCGFREEDPEELILSIPSDPISLDPLFSTDLSSRT
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHEEECCCCCCCCCCCCCCCCCHHH
VGKFLYPFLFQKTPEGKPAYQLVESFRLFGTGEVRSLKLKLRSHLLSNGEELRAGQVRES
HHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
LLRLITTPSPRKNQYEFIKEINVLGPKEIELKISGGLRQAIDALSLPPAGIVCCINGDDK
HHHHHCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHCCCCCCEEEEECCCCC
KLKADSFETLEKNDINSIPKAGKYLLKEWKKNNYVLLEKNPYTIEDLPKRIRLRILASAS
CCCCCCHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHEEEEEEEECC
TGIFLFSKGKMDLMRLPNFLLKNPHIKKENLRFRKGQGVQYIAIRAKEPCFDENFRKALN
CCEEEEECCCHHHHHCCHHHHCCCCCCCCCCCEECCCCEEEEEEECCCCCCCHHHHHHHH
TVVDPNLVIRKLLEGNADPTFGPVPPGSISQTKMRKIISENPEILSIQTHSREKAEEYLK
HHCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEECCCHHHHHHHHH
KSICYPAILEKEIDFRMRGDEENNANGLALAGFLRELGLKIKIRPMEKVILYKENAEGKG
HHCCCHHHHHHCCCEEECCCCCCCCCCHHHHHHHHHCCCEEEEEECEEEEEEECCCCCCC
DLTLLFWYADLPGAWHFIDPLFSGKDKGNGGNRAHYENQELEAIISRARNLDSLNSETTK
CEEEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHH
ALQILLRENPWIYLWSPHETFLISEKGKRYSNLEDYL
HHHHHHCCCCEEEEECCCCEEEEECCCCCCCCHHHCC
>Mature Secondary Structure
MDRFSLLNTSLTFFAGILVLSFLFSDCGFREEDPEELILSIPSDPISLDPLFSTDLSSRT
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHEEECCCCCCCCCCCCCCCCCHHH
VGKFLYPFLFQKTPEGKPAYQLVESFRLFGTGEVRSLKLKLRSHLLSNGEELRAGQVRES
HHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
LLRLITTPSPRKNQYEFIKEINVLGPKEIELKISGGLRQAIDALSLPPAGIVCCINGDDK
HHHHHCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHCCCCCCEEEEECCCCC
KLKADSFETLEKNDINSIPKAGKYLLKEWKKNNYVLLEKNPYTIEDLPKRIRLRILASAS
CCCCCCHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHEEEEEEEECC
TGIFLFSKGKMDLMRLPNFLLKNPHIKKENLRFRKGQGVQYIAIRAKEPCFDENFRKALN
CCEEEEECCCHHHHHCCHHHHCCCCCCCCCCCEECCCCEEEEEEECCCCCCCHHHHHHHH
TVVDPNLVIRKLLEGNADPTFGPVPPGSISQTKMRKIISENPEILSIQTHSREKAEEYLK
HHCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEECCCHHHHHHHHH
KSICYPAILEKEIDFRMRGDEENNANGLALAGFLRELGLKIKIRPMEKVILYKENAEGKG
HHCCCHHHHHHCCCEEECCCCCCCCCCHHHHHHHHHCCCEEEEEECEEEEEEECCCCCCC
DLTLLFWYADLPGAWHFIDPLFSGKDKGNGGNRAHYENQELEAIISRARNLDSLNSETTK
CEEEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHH
ALQILLRENPWIYLWSPHETFLISEKGKRYSNLEDYL
HHHHHHCCCCEEEEECCCCEEEEECCCCCCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]