Click here to switch to the map view.

The map label for this gene is fabD

Identifier: 116327006

GI number: 116327006

Start: 207977

End: 209134

Strand: Direct

Name: fabD

Synonym: LBL_0176

Alternate gene names: NA

Gene position: 207977-209134 (Clockwise)

Preceding gene: 116327005

Following gene: 116327007

Centisome position: 5.75

GC content: 41.11

Gene sequence:

>1158_bases
ATGGCAATTGCAAACTTTCTGAATCAAGTCAAAGCTAGTGGAGGGAAACTTTTTCTTCAATTCGGAGGACAAGGATCTCC
TTTTTTGAAAGAATTCTCCAAACTTTACGAATCTGAGCCTTCTCTTAAAGAATTCTTCGATATTTCTTTTAAAGCCATCG
TCGAGGAAGTTCCTAAGCTCGATAAAAACATCATTTACGGCGGTTACGACTTCGAAAGCTGGATTAAAAATTCGGATTCG
GCTCCGGACGAGAATTATCTTTGCAGCGCACCTGTTTCCATCGTCGGAATTTTTCTGACCCAAATCGGAAACTACATCGC
ATTCACGAACAAAGGTTTCCCTGTTTCTGAGTTGATTTCCAACTCAATCGGAGTTACGGGCCACAGCCAAGGTGTTATCT
CTTCCGCGTTAATCGCTCTTGGTAAAGAAGGAGCGGACTTCTATTCAGCGTATGCTAAATTTTTAAAGTTCGTATTGTAT
ATCGGTTATAGAGCGCAGGAACTAGTCGGTGTTTACAATCCTTCCCAGGCTCTTCTCAAAGCAAACGAGGAAGTGGGCGA
CAAACAGCCGACTCCAATGGTTGCGGTGATCGGTTATTCTCAAAAAGAACTCGAAGATAAAGTCAGACAAACTAACGATG
CCCTTGGTTTGAGTGGAAGTAAAACGATTTATGTAAGTCTTTTTAACACACCCGATTCCAATATCGTTTCGGGAAGCCCC
GAGTCCCTTCTTGAATTTCGTAAAAAGTTCAAAGCGGAAATGGAAGAAAAAAAAGTAAAGTTCGTTTATCTCAGAACAAC
CGCTCCTTTTCATTCCCCACATATGGAGGATACAAACAAAACTATTCCATTGGATATGGAAAGAATCGGTTTCGATTTTA
AAGGTTCCGATCTAAAGGTTCCAGTTTATTCCATTTTTGACGGAAGAAACATGCAGTCCGATGCGGGAATCGGTCTTCCA
CTTTTTAGAGAGATGTTAATCAAAACTCTTCACTGGGATAAGGCAGTTAAACCTTTTGTTACCACTGTGAACGTTACAGG
TATCGATTTTGGACCGAGTGTCGTAAGCCAAAAACTGACTCAAGCAAATATGGGAACTTCCGAAAATAAAATCTACGCAG
TTTCCAGCCCTAAGGATATTAAGGTTCTATTGGCCTGA

Upstream 100 bases:

>100_bases
TCGATAGTGAACGCAACCCAAGTTTCCGAAATAAAAAAGAATTGCGGAACCTTCTATAAAACGAGATTCATCCTTAAACA
CCTAAGGAAAATCAAAGTTC

Downstream 100 bases:

>100_bases
AAAACGGAAGATTTTCGATTCTAAAATGGATTTACCCGTTCCGAAAATTTCTTCTGGAACGGGTTTCTAACTTTTTTTCT
CTTAAAAGACCTAAATTAGA

Product: [Acyl-carrier protein] S-malonyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 385; Mature: 384

Protein sequence:

>385_residues
MAIANFLNQVKASGGKLFLQFGGQGSPFLKEFSKLYESEPSLKEFFDISFKAIVEEVPKLDKNIIYGGYDFESWIKNSDS
APDENYLCSAPVSIVGIFLTQIGNYIAFTNKGFPVSELISNSIGVTGHSQGVISSALIALGKEGADFYSAYAKFLKFVLY
IGYRAQELVGVYNPSQALLKANEEVGDKQPTPMVAVIGYSQKELEDKVRQTNDALGLSGSKTIYVSLFNTPDSNIVSGSP
ESLLEFRKKFKAEMEEKKVKFVYLRTTAPFHSPHMEDTNKTIPLDMERIGFDFKGSDLKVPVYSIFDGRNMQSDAGIGLP
LFREMLIKTLHWDKAVKPFVTTVNVTGIDFGPSVVSQKLTQANMGTSENKIYAVSSPKDIKVLLA

Sequences:

>Translated_385_residues
MAIANFLNQVKASGGKLFLQFGGQGSPFLKEFSKLYESEPSLKEFFDISFKAIVEEVPKLDKNIIYGGYDFESWIKNSDS
APDENYLCSAPVSIVGIFLTQIGNYIAFTNKGFPVSELISNSIGVTGHSQGVISSALIALGKEGADFYSAYAKFLKFVLY
IGYRAQELVGVYNPSQALLKANEEVGDKQPTPMVAVIGYSQKELEDKVRQTNDALGLSGSKTIYVSLFNTPDSNIVSGSP
ESLLEFRKKFKAEMEEKKVKFVYLRTTAPFHSPHMEDTNKTIPLDMERIGFDFKGSDLKVPVYSIFDGRNMQSDAGIGLP
LFREMLIKTLHWDKAVKPFVTTVNVTGIDFGPSVVSQKLTQANMGTSENKIYAVSSPKDIKVLLA
>Mature_384_residues
AIANFLNQVKASGGKLFLQFGGQGSPFLKEFSKLYESEPSLKEFFDISFKAIVEEVPKLDKNIIYGGYDFESWIKNSDSA
PDENYLCSAPVSIVGIFLTQIGNYIAFTNKGFPVSELISNSIGVTGHSQGVISSALIALGKEGADFYSAYAKFLKFVLYI
GYRAQELVGVYNPSQALLKANEEVGDKQPTPMVAVIGYSQKELEDKVRQTNDALGLSGSKTIYVSLFNTPDSNIVSGSPE
SLLEFRKKFKAEMEEKKVKFVYLRTTAPFHSPHMEDTNKTIPLDMERIGFDFKGSDLKVPVYSIFDGRNMQSDAGIGLPL
FREMLIKTLHWDKAVKPFVTTVNVTGIDFGPSVVSQKLTQANMGTSENKIYAVSSPKDIKVLLA

Specific function: Unknown

COG id: COG0331

COG function: function code I; (acyl-carrier-protein) S-malonyltransferase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Saccharomyces cerevisiae, GI6322666, Length=365, Percent_Identity=27.6712328767123, Blast_Score=127, Evalue=3e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 42490; Mature: 42359

Theoretical pI: Translated: 6.54; Mature: 6.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIANFLNQVKASGGKLFLQFGGQGSPFLKEFSKLYESEPSLKEFFDISFKAIVEEVPKL
CCHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
DKNIIYGGYDFESWIKNSDSAPDENYLCSAPVSIVGIFLTQIGNYIAFTNKGFPVSELIS
CCCEEECCCCHHHHHCCCCCCCCCCCEECCHHHHHHHHHHHHCCEEEEECCCCCHHHHHH
NSIGVTGHSQGVISSALIALGKEGADFYSAYAKFLKFVLYIGYRAQELVGVYNPSQALLK
CCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCHHHHHH
ANEEVGDKQPTPMVAVIGYSQKELEDKVRQTNDALGLSGSKTIYVSLFNTPDSNIVSGSP
CCHHCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCH
ESLLEFRKKFKAEMEEKKVKFVYLRTTAPFHSPHMEDTNKTIPLDMERIGFDFKGSDLKV
HHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCEEE
PVYSIFDGRNMQSDAGIGLPLFREMLIKTLHWDKAVKPFVTTVNVTGIDFGPSVVSQKLT
EEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHH
QANMGTSENKIYAVSSPKDIKVLLA
HHCCCCCCCEEEEECCCCCEEEEEC
>Mature Secondary Structure 
AIANFLNQVKASGGKLFLQFGGQGSPFLKEFSKLYESEPSLKEFFDISFKAIVEEVPKL
CHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
DKNIIYGGYDFESWIKNSDSAPDENYLCSAPVSIVGIFLTQIGNYIAFTNKGFPVSELIS
CCCEEECCCCHHHHHCCCCCCCCCCCEECCHHHHHHHHHHHHCCEEEEECCCCCHHHHHH
NSIGVTGHSQGVISSALIALGKEGADFYSAYAKFLKFVLYIGYRAQELVGVYNPSQALLK
CCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCHHHHHH
ANEEVGDKQPTPMVAVIGYSQKELEDKVRQTNDALGLSGSKTIYVSLFNTPDSNIVSGSP
CCHHCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCH
ESLLEFRKKFKAEMEEKKVKFVYLRTTAPFHSPHMEDTNKTIPLDMERIGFDFKGSDLKV
HHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCEEE
PVYSIFDGRNMQSDAGIGLPLFREMLIKTLHWDKAVKPFVTTVNVTGIDFGPSVVSQKLT
EEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHH
QANMGTSENKIYAVSSPKDIKVLLA
HHCCCCCCCEEEEECCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA