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The map label for this gene is yvrC [H]

Identifier: 116326958

GI number: 116326958

Start: 144921

End: 145703

Strand: Reverse

Name: yvrC [H]

Synonym: LBL_0124

Alternate gene names: 116326958

Gene position: 145703-144921 (Counterclockwise)

Preceding gene: 116326959

Following gene: 116326957

Centisome position: 4.03

GC content: 40.1

Gene sequence:

>783_bases
ATGGTCGCTCGGTTAGGTCCGAAGAGAATCGTCTGTCTCACCGAAGAAACGACCGAGTTATTTTATTTACTCGGAGAGGA
AGAACGTATCGTAGGAATCTCCGCGTATACGGTTCGACCTCTTAAAGCTAAAAAACAAAAGCCCAAAGTTTCTGCGTTTA
TCAATGGAAATATTAAACGTATTCAGGAGTTGAAGCCGGATCTTATCATCGGCTTTTCGGACATTCAAGCCAACTTAGCG
AAAGATTTAATATCAGAAGGACTTAACGTTCTCATAACTAACCAAAGAACGATTTTCGAGATTTTTGATACGCTGCTGCT
TTTGGGGTCCATAGTAAACAAAAGGAACGAAACACAAAAACTAATAGAAGGCTGGAAGAGAAAGTTAGACGAAATTCAGC
AAAGATACATTTCCCAGAGTCGCATTTCCGTTTTTTTTCAAGAATGGGACGAACCGATTATTAGTGGAATTTCCTGGGTT
TCGGAATTGATCGAATTGGCGGGTGGAAAAGATTGTTTTGAATATCTCAAAAAAAAATCCCTAGCGAAGGATAGAATTAT
CTCTGCATCGGATGTGGCAAAAGCAAACCCGGATGTATACATAGGTTCTTGGTGCGGAAAACCGGTGAATTTTGAATGGG
TGCAGAAACACCCGGACTGGCAAAATGTAAATGCAATTCGAAATCAAAAAATTTACGAACTAGATTCTTCAATCATTCTC
CAACCTGGTCCCGCGTTATTTGAGGAAGGGATTGATCATCTCGTCAGATTGATTCGTTCTTAA

Upstream 100 bases:

>100_bases
TGAACGATTTTATGGCTCAAACCTGTAACGCGACCCTTAGGAAGCGTTACATGAGTTATTTACCCCTATGGTCGCTACGG
AAAACTCAAACCTCGCTCCT

Downstream 100 bases:

>100_bases
AGAAGTTTCCAAGTCTTAGAAATAACTTACAGCGCGTCCCAAAACCTGTGGAAGCGATCTTTAGAGAGCAGCGCCACTTT
AGTTTCTTTTGGGACAGGTC

Product: substrate binding protein of an ABC transporter complex

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MVARLGPKRIVCLTEETTELFYLLGEEERIVGISAYTVRPLKAKKQKPKVSAFINGNIKRIQELKPDLIIGFSDIQANLA
KDLISEGLNVLITNQRTIFEIFDTLLLLGSIVNKRNETQKLIEGWKRKLDEIQQRYISQSRISVFFQEWDEPIISGISWV
SELIELAGGKDCFEYLKKKSLAKDRIISASDVAKANPDVYIGSWCGKPVNFEWVQKHPDWQNVNAIRNQKIYELDSSIIL
QPGPALFEEGIDHLVRLIRS

Sequences:

>Translated_260_residues
MVARLGPKRIVCLTEETTELFYLLGEEERIVGISAYTVRPLKAKKQKPKVSAFINGNIKRIQELKPDLIIGFSDIQANLA
KDLISEGLNVLITNQRTIFEIFDTLLLLGSIVNKRNETQKLIEGWKRKLDEIQQRYISQSRISVFFQEWDEPIISGISWV
SELIELAGGKDCFEYLKKKSLAKDRIISASDVAKANPDVYIGSWCGKPVNFEWVQKHPDWQNVNAIRNQKIYELDSSIIL
QPGPALFEEGIDHLVRLIRS
>Mature_260_residues
MVARLGPKRIVCLTEETTELFYLLGEEERIVGISAYTVRPLKAKKQKPKVSAFINGNIKRIQELKPDLIIGFSDIQANLA
KDLISEGLNVLITNQRTIFEIFDTLLLLGSIVNKRNETQKLIEGWKRKLDEIQQRYISQSRISVFFQEWDEPIISGISWV
SELIELAGGKDCFEYLKKKSLAKDRIISASDVAKANPDVYIGSWCGKPVNFEWVQKHPDWQNVNAIRNQKIYELDSSIIL
QPGPALFEEGIDHLVRLIRS

Specific function: Probably part of an ABC transporter complex [H]

COG id: COG0614

COG function: function code P; ABC-type Fe3+-hydroxamate transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Fe/B12 periplasmic-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002491 [H]

Pfam domain/function: PF01497 Peripla_BP_2 [H]

EC number: NA

Molecular weight: Translated: 29728; Mature: 29728

Theoretical pI: Translated: 8.44; Mature: 8.44

Prosite motif: PS50983 FE_B12_PBP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVARLGPKRIVCLTEETTELFYLLGEEERIVGISAYTVRPLKAKKQKPKVSAFINGNIKR
CCCCCCCCEEEEEECCCCEEEEEECCCCEEEEEEHHEECCHHHHCCCCCEEEEECCCHHH
IQELKPDLIIGFSDIQANLAKDLISEGLNVLITNQRTIFEIFDTLLLLGSIVNKRNETQK
HHHCCCCEEEEHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCHHHH
LIEGWKRKLDEIQQRYISQSRISVFFQEWDEPIISGISWVSELIELAGGKDCFEYLKKKS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
LAKDRIISASDVAKANPDVYIGSWCGKPVNFEWVQKHPDWQNVNAIRNQKIYELDSSIIL
HHHHHCCCHHHHHCCCCCEEEECCCCCCCCHHHHHCCCCCCCHHHHHCCHHEECCCCEEE
QPGPALFEEGIDHLVRLIRS
CCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MVARLGPKRIVCLTEETTELFYLLGEEERIVGISAYTVRPLKAKKQKPKVSAFINGNIKR
CCCCCCCCEEEEEECCCCEEEEEECCCCEEEEEEHHEECCHHHHCCCCCEEEEECCCHHH
IQELKPDLIIGFSDIQANLAKDLISEGLNVLITNQRTIFEIFDTLLLLGSIVNKRNETQK
HHHCCCCEEEEHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCHHHH
LIEGWKRKLDEIQQRYISQSRISVFFQEWDEPIISGISWVSELIELAGGKDCFEYLKKKS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
LAKDRIISASDVAKANPDVYIGSWCGKPVNFEWVQKHPDWQNVNAIRNQKIYELDSSIIL
HHHHHCCCHHHHHCCCCCEEEECCCCCCCCHHHHHCCCCCCCHHHHHCCHHEECCCCEEE
QPGPALFEEGIDHLVRLIRS
CCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9639930; 9384377 [H]