Click here to switch to the map view.

The map label for this gene is tnhA [H]

Identifier: 116326948

GI number: 116326948

Start: 130026

End: 131117

Strand: Direct

Name: tnhA [H]

Synonym: LBL_0114

Alternate gene names: 116326948

Gene position: 130026-131117 (Clockwise)

Preceding gene: 116326945

Following gene: 116326961

Centisome position: 3.6

GC content: 39.01

Gene sequence:

>1092_bases
ATGAAAAGAAAAGTATATGTAGGAATGGATGTCCACAAAGAAACGATCCAAATCGCGTATTTAACGAGCAATTCAAAGGA
AATATTGAAAGAACAACAGATAAAACACAATGAAGTTCAAATCAAAAAGTTCATCAAAAAACTCAAAACAGAATGGAATG
AAATACATTGTTACGAAGCGGGAGTAACCGGTTATCCACTTTACAGATATCTAAAGTCATTGGGAGTGAACTGTATCCTT
GTAGCGCCTGGAAAGATTCCAAGACAAAATACCGATAAGATCAAAACGGATAAAAGAGACGCGATCAAATTAGCGAGATT
AATGCGAAGTGGAGAATTGGAATCGATTCATGTTCCCAGTGAAGAGGACGAAGCAGTAAGAGATTATTTAAGATCCCGTG
ACAGTCTTCGTTTGGATTTAGGAAGGAATCGTCAAAGGTTGATGAAATTCTTATTAAGAAAAGACATAAAGTATTCCACA
ACGAAGTATTGGACGGTGAGTCATTACAAATGGTTGAACAATCTTCACTTTAACAACGAGATCCTTCAAGAGACGTTTAA
CGATTATTATAGTCGAGTGAGAGTTCAAGAAGAGAATCTAAAAGCGATGGATAAAAAGATACAAGAGATAGCGGAAAGTG
AACCGTATCGAGAGAAAGTGGGAATCTTAAGATGCTTTCGAGGAGTGGACTATTTAACGGCAATGTTCTTACTTTGTGAG
GTAAACGACTTCAAGCGATTCAAAACGGCCGGTTCGTTCATGAGTTTTCTTGGACTTGTTCCTGGAGAATATTCCAGCGG
TTCCAAAAGAAAACAAACAGGGATTACTAAAACAGGAAGTCCGAGACTTAGAAGGATTTTGACGGAAGCGGCTTGGCAAC
ATCGCTTCTCTGGAACAGGAAGTAAAATCATAACCGCACGTAGATCGGGACAACCTGCATTAGTCGTTGCTTTAGCGGAA
AAAGCTTCTCTCAGGTTACACAAGAAATTTCGCAATCTACAGCTAAGAGGAAAAACTCCTCAAGTGATGATAACGGCAGT
TTCAAGAGAGTTATCCGGATTTCTTTGGGCGGCAATGAATCTTGTAGCCTAA

Upstream 100 bases:

>100_bases
CCAAAAAATTTAGACAAAATGGCGCCCCTTCTGGGCTTGAAAAACGTGGGTTATATGCGAGCATTTACCACAAAACAAAA
AAACCAACAGAAGGAACGCA

Downstream 100 bases:

>100_bases
AGTTAGAGTAATGTTCATCCAATAATTGAATTCGTTAGAGAAGATGTACGATAAAGGAGGAATACTTGTTGGCGAGAGTG
TTGAAGCAAATTTGAATTTC

Product: transposase IS1533

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 363; Mature: 363

Protein sequence:

>363_residues
MKRKVYVGMDVHKETIQIAYLTSNSKEILKEQQIKHNEVQIKKFIKKLKTEWNEIHCYEAGVTGYPLYRYLKSLGVNCIL
VAPGKIPRQNTDKIKTDKRDAIKLARLMRSGELESIHVPSEEDEAVRDYLRSRDSLRLDLGRNRQRLMKFLLRKDIKYST
TKYWTVSHYKWLNNLHFNNEILQETFNDYYSRVRVQEENLKAMDKKIQEIAESEPYREKVGILRCFRGVDYLTAMFLLCE
VNDFKRFKTAGSFMSFLGLVPGEYSSGSKRKQTGITKTGSPRLRRILTEAAWQHRFSGTGSKIITARRSGQPALVVALAE
KASLRLHKKFRNLQLRGKTPQVMITAVSRELSGFLWAAMNLVA

Sequences:

>Translated_363_residues
MKRKVYVGMDVHKETIQIAYLTSNSKEILKEQQIKHNEVQIKKFIKKLKTEWNEIHCYEAGVTGYPLYRYLKSLGVNCIL
VAPGKIPRQNTDKIKTDKRDAIKLARLMRSGELESIHVPSEEDEAVRDYLRSRDSLRLDLGRNRQRLMKFLLRKDIKYST
TKYWTVSHYKWLNNLHFNNEILQETFNDYYSRVRVQEENLKAMDKKIQEIAESEPYREKVGILRCFRGVDYLTAMFLLCE
VNDFKRFKTAGSFMSFLGLVPGEYSSGSKRKQTGITKTGSPRLRRILTEAAWQHRFSGTGSKIITARRSGQPALVVALAE
KASLRLHKKFRNLQLRGKTPQVMITAVSRELSGFLWAAMNLVA
>Mature_363_residues
MKRKVYVGMDVHKETIQIAYLTSNSKEILKEQQIKHNEVQIKKFIKKLKTEWNEIHCYEAGVTGYPLYRYLKSLGVNCIL
VAPGKIPRQNTDKIKTDKRDAIKLARLMRSGELESIHVPSEEDEAVRDYLRSRDSLRLDLGRNRQRLMKFLLRKDIKYST
TKYWTVSHYKWLNNLHFNNEILQETFNDYYSRVRVQEENLKAMDKKIQEIAESEPYREKVGILRCFRGVDYLTAMFLLCE
VNDFKRFKTAGSFMSFLGLVPGEYSSGSKRKQTGITKTGSPRLRRILTEAAWQHRFSGTGSKIITARRSGQPALVVALAE
KASLRLHKKFRNLQLRGKTPQVMITAVSRELSGFLWAAMNLVA

Specific function: Required for the transposition of the insertion element (Potential) [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transposase IS1111A/IS1328/IS1533 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 42178; Mature: 42178

Theoretical pI: Translated: 10.54; Mature: 10.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRKVYVGMDVHKETIQIAYLTSNSKEILKEQQIKHNEVQIKKFIKKLKTEWNEIHCYEA
CCCEEEEECCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEC
GVTGYPLYRYLKSLGVNCILVAPGKIPRQNTDKIKTDKRDAIKLARLMRSGELESIHVPS
CCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEECCC
EEDEAVRDYLRSRDSLRLDLGRNRQRLMKFLLRKDIKYSTTKYWTVSHYKWLNNLHFNNE
CCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHCCCCCHH
ILQETFNDYYSRVRVQEENLKAMDKKIQEIAESEPYREKVGILRCFRGVDYLTAMFLLCE
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
VNDFKRFKTAGSFMSFLGLVPGEYSSGSKRKQTGITKTGSPRLRRILTEAAWQHRFSGTG
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCC
SKIITARRSGQPALVVALAEKASLRLHKKFRNLQLRGKTPQVMITAVSRELSGFLWAAMN
CEEEEEECCCCCEEEEEEHHHHHHHHHHHHHCCEECCCCCEEEHHHHHHHHHHHHHHHHH
LVA
HCC
>Mature Secondary Structure
MKRKVYVGMDVHKETIQIAYLTSNSKEILKEQQIKHNEVQIKKFIKKLKTEWNEIHCYEA
CCCEEEEECCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEC
GVTGYPLYRYLKSLGVNCILVAPGKIPRQNTDKIKTDKRDAIKLARLMRSGELESIHVPS
CCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEECCC
EEDEAVRDYLRSRDSLRLDLGRNRQRLMKFLLRKDIKYSTTKYWTVSHYKWLNNLHFNNE
CCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHCCCCCHH
ILQETFNDYYSRVRVQEENLKAMDKKIQEIAESEPYREKVGILRCFRGVDYLTAMFLLCE
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
VNDFKRFKTAGSFMSFLGLVPGEYSSGSKRKQTGITKTGSPRLRRILTEAAWQHRFSGTG
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCC
SKIITARRSGQPALVVALAEKASLRLHKKFRNLQLRGKTPQVMITAVSRELSGFLWAAMN
CEEEEEECCCCCEEEEEEHHHHHHHHHHHHHCCEECCCCCEEEHHHHHHHHHHHHHHHHH
LVA
HCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8171119 [H]