Click here to switch to the map view.

The map label for this gene is csrA

Identifier: 116326936

GI number: 116326936

Start: 113198

End: 113452

Strand: Direct

Name: csrA

Synonym: LBL_0100

Alternate gene names: 116326936

Gene position: 113198-113452 (Clockwise)

Preceding gene: 116326935

Following gene: 116326937

Centisome position: 3.13

GC content: 39.22

Gene sequence:

>255_bases
GTGCTGGTCTTAGCAAGACGAACCAACGAATCGATTATGATCGGTGACGACATAGAAATTGTCATTGTAGATATAAAAGG
TGATCAAGTGAAAATTGGAGTTAAAGCTCCGAGAAACGTTTCGGTACATAGAGCTGAAGTTTACAAAGACATTCAGGAGG
AAAATAGAAAGGCGGCGGAAACAAAAATTAAACCGGAAGATCTTGGTAAGATCGGAGACATTTTAAAAAAGAAGGATTCC
GGGAAAAAAGGCTGA

Upstream 100 bases:

>100_bases
TAATAAAAAAACTCTTTTAGGGAAACAATTTATTTCAAGAAACGAATCTCATTCTGTTCGGGAAAAAATTCTTGCATCAG
CCGCAGTGGAGATGGATTAA

Downstream 100 bases:

>100_bases
CGGTACTTTAAAAATTTATAAACAATTAATAGACTTACAGGAACGGAGTGTAAGGTCTTATCTTGGCTATTACACTTTTT
TCAATTTGTGGTCATTGCCA

Product: carbon storage regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 84; Mature: 84

Protein sequence:

>84_residues
MLVLARRTNESIMIGDDIEIVIVDIKGDQVKIGVKAPRNVSVHRAEVYKDIQEENRKAAETKIKPEDLGKIGDILKKKDS
GKKG

Sequences:

>Translated_84_residues
MLVLARRTNESIMIGDDIEIVIVDIKGDQVKIGVKAPRNVSVHRAEVYKDIQEENRKAAETKIKPEDLGKIGDILKKKDS
GKKG
>Mature_84_residues
MLVLARRTNESIMIGDDIEIVIVDIKGDQVKIGVKAPRNVSVHRAEVYKDIQEENRKAAETKIKPEDLGKIGDILKKKDS
GKKG

Specific function: Could accelerate the degradation of some genes transcripts potentially through selective RNA binding

COG id: COG1551

COG function: function code T; Carbon storage regulator (could also regulate swarming and quorum sensing)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CsrA family

Homologues:

Organism=Escherichia coli, GI1789047, Length=59, Percent_Identity=49.1525423728814, Blast_Score=71, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CSRA_LEPBJ (Q04P11)

Other databases:

- EMBL:   CP000350
- RefSeq:   YP_802117.1
- ProteinModelPortal:   Q04P11
- SMR:   Q04P11
- STRING:   Q04P11
- GeneID:   4411226
- GenomeReviews:   CP000350_GR
- KEGG:   lbj:LBJ_2964
- HOGENOM:   HBG724655
- OMA:   RIGINAP
- PhylomeDB:   Q04P11
- ProtClustDB:   PRK01712
- BioCyc:   LBOR355277:LBJ_2964-MONOMER
- HAMAP:   MF_00167
- InterPro:   IPR003751
- ProDom:   PD009007
- TIGRFAMs:   TIGR00202

Pfam domain/function: PF02599 CsrA

EC number: NA

Molecular weight: Translated: 9354; Mature: 9354

Theoretical pI: Translated: 9.95; Mature: 9.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVLARRTNESIMIGDDIEIVIVDIKGDQVKIGVKAPRNVSVHRAEVYKDIQEENRKAAE
CEEEEECCCCEEEECCCCEEEEEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHCHHHHH
TKIKPEDLGKIGDILKKKDSGKKG
CCCCHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MLVLARRTNESIMIGDDIEIVIVDIKGDQVKIGVKAPRNVSVHRAEVYKDIQEENRKAAE
CEEEEECCCCEEEECCCCEEEEEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHCHHHHH
TKIKPEDLGKIGDILKKKDSGKKG
CCCCHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA