Definition Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence.
Accession NC_008390
Length 3,556,545

Click here to switch to the map view.

The map label for this gene is 115353265

Identifier: 115353265

GI number: 115353265

Start: 3553133

End: 3553570

Strand: Direct

Name: 115353265

Synonym: Bamb_3214

Alternate gene names: NA

Gene position: 3553133-3553570 (Clockwise)

Preceding gene: 115353263

Following gene: NA

Centisome position: 99.9

GC content: 62.79

Gene sequence:

>438_bases
ATGCCGACACCCGAAGAAAAAGCAGCGTTCTCGGAACGCCTGAAATTCGCCTTGCGGCGCAGCCCGGAGAAGATCACCGG
TGCGACGGAACTGGCGAACCGGTTCAATCTGCGTCACCGCGGTGCGCAACCGGTTTCGCCGCAAACCGCGCACAAATGGC
TGACGGGCCGCACGATTCCAACGCCGGACAAACTCGAAACGCTCGCCAGCTGGTTGCGCGTGGAATTGCATTGGTTGCAC
TACGGCCCGTCGCCGAGCGTGATCGAGCACACGACGCCGCAACCGCTGCCGCGTGACGAGCGCTATCCGCCGACGCCCGA
GACGATCGAACTCGCGTCGAAGATCGAGGCGCTGCCGCCGCATCAGCGTTACCTCGTTCAGGAACTGATCGAGCAGTTCT
ACGGCGGCGAACCGAAAATCGACGCGAAGAAGGCCTGA

Upstream 100 bases:

>100_bases
CCGCCGCGCGCGCCGTCGCAGGTTGGGATTCATCTGAACAGGCTATGTTTAGCTTATACGGTTGTCTGAAACGCGTCGGC
GGAATTGCACAATCACCCCC

Downstream 100 bases:

>100_bases
ACGGCAGCGGCCCGCGTACGCCATCGCGCCGCCGCGCCACCTGCCGGAAACGAAAAAGCCGCACGGATCGCTCCATGCGG
CTTTTTTACGTGCATCGCGG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 145; Mature: 144

Protein sequence:

>145_residues
MPTPEEKAAFSERLKFALRRSPEKITGATELANRFNLRHRGAQPVSPQTAHKWLTGRTIPTPDKLETLASWLRVELHWLH
YGPSPSVIEHTTPQPLPRDERYPPTPETIELASKIEALPPHQRYLVQELIEQFYGGEPKIDAKKA

Sequences:

>Translated_145_residues
MPTPEEKAAFSERLKFALRRSPEKITGATELANRFNLRHRGAQPVSPQTAHKWLTGRTIPTPDKLETLASWLRVELHWLH
YGPSPSVIEHTTPQPLPRDERYPPTPETIELASKIEALPPHQRYLVQELIEQFYGGEPKIDAKKA
>Mature_144_residues
PTPEEKAAFSERLKFALRRSPEKITGATELANRFNLRHRGAQPVSPQTAHKWLTGRTIPTPDKLETLASWLRVELHWLHY
GPSPSVIEHTTPQPLPRDERYPPTPETIELASKIEALPPHQRYLVQELIEQFYGGEPKIDAKKA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16575; Mature: 16444

Theoretical pI: Translated: 9.45; Mature: 9.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTPEEKAAFSERLKFALRRSPEKITGATELANRFNLRHRGAQPVSPQTAHKWLTGRTIP
CCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCC
TPDKLETLASWLRVELHWLHYGPSPSVIEHTTPQPLPRDERYPPTPETIELASKIEALPP
CHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC
HQRYLVQELIEQFYGGEPKIDAKKA
HHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
PTPEEKAAFSERLKFALRRSPEKITGATELANRFNLRHRGAQPVSPQTAHKWLTGRTIP
CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCC
TPDKLETLASWLRVELHWLHYGPSPSVIEHTTPQPLPRDERYPPTPETIELASKIEALPP
CHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC
HQRYLVQELIEQFYGGEPKIDAKKA
HHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA