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The map label for this gene is cph2 [H]

Identifier: 115353263

GI number: 115353263

Start: 3549525

End: 3550883

Strand: Direct

Name: cph2 [H]

Synonym: Bamb_3212

Alternate gene names: 115353263

Gene position: 3549525-3550883 (Clockwise)

Preceding gene: 115353262

Following gene: 115353265

Centisome position: 99.8

GC content: 68.8

Gene sequence:

>1359_bases
ATGGAAGGTATCCTGATCCAGCATACGACGCGTCGTCAGCTGTGGTTCGGCGCGCTCACGGCACTGGTGATCGTGCTCGC
GCTCGGGATCGCCGCGCCACACGCGAACGTCGCGCTGCCGGCCGTCGAGCCGTTCATGCCGATGTGCGCGCTGACCGTGT
TCACCACCGCGAGCATCGCCGCATTCTTCCTTGGCGCGCAGTTCACCGTGACGCGCCAGCCCGTGCTCGGCGCGCTCGGC
GGCGCCTATGCGTTCACCGCACTCGCCGTCGCGCTGCAGCTGCTGACCTTTCCCGGCGTGTTCGCGCCGCATGGGCTGTT
CGGCGCACAACCGCAAAGCGCCGCGTGGATGTGGATCTTCTGGCACGCGGGCTTCCCTGGTTTCGTCATGGTCGCGCTGC
TCGCGCGTGCTCGGCTGGCGCGCGCGCCGATCGGCGCTCGGCAGACGCGCTGGTGGACGCTCGCGCTGGTCGGCGGGCCC
GCTGTCACCGCCGGCGTGCTGTGCCTGTTCGCGCTGAACGTGTCGCTGCCGCCTGCGTTTCGTCCGCCGGGCAATGCGGC
CGTGCTGCCCGTCAACGGCGTCGCGCTCGTCGTGTGGACACTCAATGCGCTGGCGCTCGTCGCGGTGCTGGTCTCCGGCC
GGCTGCGCACGACCCTCGACCTCTGGCTCGCGATCGCGGTGCTCGCGTGCCTGACCGATACGACGCTGAACCTGTTGAGC
ACCCATCGTTTCACGATCGGCTGGTATCTCGCGCGCGTGTTCAGCATGTTCACGCCGGGCATACTCGTGTGCGTGCTCGC
CTGGGAAGTGACGATGCTGTATCAGCGGCTGTTCGAGGCGCACACGATGCTCATCCGTTCGTCCGCACGCGACGGGCTGA
CGGGCGCGTTCAACCGCAGCCACTTCAACGATCACTTTCACACGCTGTTCCTGCAGGCGCGGCGACAGGGCGAACCGCTG
TCGCTGCTGATGGTCGACGTCGATCACTTCAAGGCATACAACGACGCGTTCGGTCACGTGAAGGGCGATGCGTGCCTGAT
CGCGGTCGCGAATGCGTTGGCCGGCGCGGTGCGGCGGCCGGCGGATATCGTCGCGCGCTACGGCGGCGAGGAGTTTGCGA
TCGTGCTGCCGAACACCGGTGCGCGCGGTGCGCGGCTCGTCGCCGAGGAAGCGCGCGAAGCCGTGCTGCGGCTCGATCTC
GCGATGCCTTCGTCGCCGGCCGGACGCGTGAGCGTCAGCGTTGGCTGCGCGACCGTGTCGGCCGCCGAGCTGTCGACGCC
CGATGCGTTGGTCGAAGCCGCCGATGCCGCGCTGTACCGCGCAAAGGATGGGGGGAGAAACCGCGTCGTCGCGGCGTGA

Upstream 100 bases:

>100_bases
ATAACGAGATAGGATCGGGCCGCACCGATCGCATCGCGGCCGGATGCACGCCGCCCGGCGCCAAGACCGGGCGTTTCCGC
ACGAGCGCCCGGGGGAGTCC

Downstream 100 bases:

>100_bases
AATCGTCTGCGGATTCGGGAGTTGTTACGGTCATTGTGACCGGAATAATCCTCCGTTACCGAATCCGGCACGGGGATACG
ATCGCTTACACGCCGTGTTG

Product: diguanylate cyclase

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 452; Mature: 452

Protein sequence:

>452_residues
MEGILIQHTTRRQLWFGALTALVIVLALGIAAPHANVALPAVEPFMPMCALTVFTTASIAAFFLGAQFTVTRQPVLGALG
GAYAFTALAVALQLLTFPGVFAPHGLFGAQPQSAAWMWIFWHAGFPGFVMVALLARARLARAPIGARQTRWWTLALVGGP
AVTAGVLCLFALNVSLPPAFRPPGNAAVLPVNGVALVVWTLNALALVAVLVSGRLRTTLDLWLAIAVLACLTDTTLNLLS
THRFTIGWYLARVFSMFTPGILVCVLAWEVTMLYQRLFEAHTMLIRSSARDGLTGAFNRSHFNDHFHTLFLQARRQGEPL
SLLMVDVDHFKAYNDAFGHVKGDACLIAVANALAGAVRRPADIVARYGGEEFAIVLPNTGARGARLVAEEAREAVLRLDL
AMPSSPAGRVSVSVGCATVSAAELSTPDALVEAADAALYRAKDGGRNRVVAA

Sequences:

>Translated_452_residues
MEGILIQHTTRRQLWFGALTALVIVLALGIAAPHANVALPAVEPFMPMCALTVFTTASIAAFFLGAQFTVTRQPVLGALG
GAYAFTALAVALQLLTFPGVFAPHGLFGAQPQSAAWMWIFWHAGFPGFVMVALLARARLARAPIGARQTRWWTLALVGGP
AVTAGVLCLFALNVSLPPAFRPPGNAAVLPVNGVALVVWTLNALALVAVLVSGRLRTTLDLWLAIAVLACLTDTTLNLLS
THRFTIGWYLARVFSMFTPGILVCVLAWEVTMLYQRLFEAHTMLIRSSARDGLTGAFNRSHFNDHFHTLFLQARRQGEPL
SLLMVDVDHFKAYNDAFGHVKGDACLIAVANALAGAVRRPADIVARYGGEEFAIVLPNTGARGARLVAEEAREAVLRLDL
AMPSSPAGRVSVSVGCATVSAAELSTPDALVEAADAALYRAKDGGRNRVVAA
>Mature_452_residues
MEGILIQHTTRRQLWFGALTALVIVLALGIAAPHANVALPAVEPFMPMCALTVFTTASIAAFFLGAQFTVTRQPVLGALG
GAYAFTALAVALQLLTFPGVFAPHGLFGAQPQSAAWMWIFWHAGFPGFVMVALLARARLARAPIGARQTRWWTLALVGGP
AVTAGVLCLFALNVSLPPAFRPPGNAAVLPVNGVALVVWTLNALALVAVLVSGRLRTTLDLWLAIAVLACLTDTTLNLLS
THRFTIGWYLARVFSMFTPGILVCVLAWEVTMLYQRLFEAHTMLIRSSARDGLTGAFNRSHFNDHFHTLFLQARRQGEPL
SLLMVDVDHFKAYNDAFGHVKGDACLIAVANALAGAVRRPADIVARYGGEEFAIVLPNTGARGARLVAEEAREAVLRLDL
AMPSSPAGRVSVSVGCATVSAAELSTPDALVEAADAALYRAKDGGRNRVVAA

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1787262, Length=240, Percent_Identity=32.9166666666667, Blast_Score=129, Evalue=5e-31,
Organism=Escherichia coli, GI1786584, Length=237, Percent_Identity=31.6455696202532, Blast_Score=120, Evalue=2e-28,
Organism=Escherichia coli, GI87081881, Length=200, Percent_Identity=35.5, Blast_Score=104, Evalue=1e-23,
Organism=Escherichia coli, GI145693134, Length=161, Percent_Identity=39.7515527950311, Blast_Score=97, Evalue=3e-21,
Organism=Escherichia coli, GI87082007, Length=209, Percent_Identity=31.5789473684211, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1788085, Length=451, Percent_Identity=25.0554323725055, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI1788381, Length=181, Percent_Identity=31.4917127071823, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1787802, Length=161, Percent_Identity=33.5403726708075, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI87081977, Length=176, Percent_Identity=31.25, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1787816, Length=181, Percent_Identity=34.8066298342541, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788956, Length=233, Percent_Identity=27.4678111587983, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1787056, Length=159, Percent_Identity=30.188679245283, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI87081974, Length=188, Percent_Identity=23.4042553191489, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1787541, Length=159, Percent_Identity=30.8176100628931, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 48153; Mature: 48153

Theoretical pI: Translated: 9.57; Mature: 9.57

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEGILIQHTTRRQLWFGALTALVIVLALGIAAPHANVALPAVEPFMPMCALTVFTTASIA
CCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHHHHHHHHHH
AFFLGAQFTVTRQPVLGALGGAYAFTALAVALQLLTFPGVFAPHGLFGAQPQSAAWMWIF
HHHHCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEE
WHAGFPGFVMVALLARARLARAPIGARQTRWWTLALVGGPAVTAGVLCLFALNVSLPPAF
EECCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCCCCCC
RPPGNAAVLPVNGVALVVWTLNALALVAVLVSGRLRTTLDLWLAIAVLACLTDTTLNLLS
CCCCCEEEEECCCCEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
THRFTIGWYLARVFSMFTPGILVCVLAWEVTMLYQRLFEAHTMLIRSSARDGLTGAFNRS
HCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
HFNDHFHTLFLQARRQGEPLSLLMVDVDHFKAYNDAFGHVKGDACLIAVANALAGAVRRP
CCCHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCC
ADIVARYGGEEFAIVLPNTGARGARLVAEEAREAVLRLDLAMPSSPAGRVSVSVGCATVS
HHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECEEEEE
AAELSTPDALVEAADAALYRAKDGGRNRVVAA
HHHCCCHHHHHHHHHHHHEECCCCCCCCCEEC
>Mature Secondary Structure
MEGILIQHTTRRQLWFGALTALVIVLALGIAAPHANVALPAVEPFMPMCALTVFTTASIA
CCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHHHHHHHHHH
AFFLGAQFTVTRQPVLGALGGAYAFTALAVALQLLTFPGVFAPHGLFGAQPQSAAWMWIF
HHHHCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEE
WHAGFPGFVMVALLARARLARAPIGARQTRWWTLALVGGPAVTAGVLCLFALNVSLPPAF
EECCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCCCCCC
RPPGNAAVLPVNGVALVVWTLNALALVAVLVSGRLRTTLDLWLAIAVLACLTDTTLNLLS
CCCCCEEEEECCCCEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
THRFTIGWYLARVFSMFTPGILVCVLAWEVTMLYQRLFEAHTMLIRSSARDGLTGAFNRS
HCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
HFNDHFHTLFLQARRQGEPLSLLMVDVDHFKAYNDAFGHVKGDACLIAVANALAGAVRRP
CCCHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCC
ADIVARYGGEEFAIVLPNTGARGARLVAEEAREAVLRLDLAMPSSPAGRVSVSVGCATVS
HHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECEEEEE
AAELSTPDALVEAADAALYRAKDGGRNRVVAA
HHHCCCHHHHHHHHHHHHEECCCCCCCCCEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]