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The map label for this gene is yjcC [C]

Identifier: 115353069

GI number: 115353069

Start: 3337226

End: 3339064

Strand: Direct

Name: yjcC [C]

Synonym: Bamb_3018

Alternate gene names: 115353069

Gene position: 3337226-3339064 (Clockwise)

Preceding gene: 115353068

Following gene: 115353070

Centisome position: 93.83

GC content: 71.78

Gene sequence:

>1839_bases
ATGCCCGCGCCCCATCCTGACTCGTCCGTTGCTCCCACCACGCGCCTGATCGCGGAGCGCGCGCTCGCCGCCGTGTTCCA
GCCGATCGTCGATCTCGGATCGGGCACGGTCGTCGGCTACGAAGGCCTGATCCGCGGCCCGAGCGGCACCGACCTCGAGC
CGCCGGCCGCGTTGTTCGCGCAGGCCGCCCGCGACGGCACGACCATCGCACTCGAGCAGGCGGCCGCGCTCGCCTGCCTC
GACGCGTTCGCGGCGCTCGGCTGCGACGGCAAGCTGTTCCTCAACTTCAGCGCGGGCACGATCGTGCAACTCGTGCGCGA
ACGCGAGCGCGTGCGGCAACTGCTCGGCCGGGCCGGCGTCGGCGCCGAGCGCATCGTGATCGAGCTGACCGAGCAGACCG
CGATGCCGGACGTCGCGCGCATCGAGCCGGCGGTCGCGTCGCTGCGCGACGCGGGCATCCAGTTCGCGCTCGACGACTAC
GGCACCGCGAACGCAAGCATGAACCTGTGGTTGCGCCTGCACCCGGATGTCGTGAAGATCGACCGCTTCTTCATCCACGA
CATCGCGCGCGACCCGCTCAAGTTCGAGGCGGTCAGGGCGATGCAGCACTTCGCGCACGCGAGCGGCGCGCAGCTGATCG
CGGAAGGCATCGAGAACGCGAGCGACCTGATCGTCGTGCGCGACATGGGCATCTGCTGCGTGCAGGGCTTCCTGCTCGGC
CGGCCGAACGCGCGGCCGTCGCCGGTCGTCGCGCCGGCCGCGCGCGACGCGATCCGCACCCCGCACATCGCGGTGTTCCC
CGGCGCGACGCGCACCGCGCGGCCGGCCGGCACGATCGCGGCGAAGATGCTCGTGCCTGCGCCGGCGCTGCCGCGCGATG
CAACCAGCAACGACGTGCTCGACCTGTTCAACCGGATGCCCGGCCTGCACGCGGTCGCGCTCGTCGAACGCGGGCGGCCG
GTCGCGCTCGTGAACCGGCGCGGCTTCATCGACCGCTTCACGCTGCCGTACCACCGCGAGGTGTTCGGGAAGAAGCCGTG
CCTGCAGTTCGCGAACGACGCGCCGCTGATGATCGACAACGCGACGTCGGTCGAGCAGCTCGCGATGCTGCTCGCGAGCC
ACGACCAGCGCTATCTCGCGGACGGTTTCGTGATCACCGAACACGGCCGCTACCTCGGGCTCGGCACCGGCGAGAGCCTC
GTGCGCGCGGTGACCGAGATGCGCATCGAGGCCGCGCGCTACGCGAATCCGCTGACCTTCCTGCCCGGCAACATCCCGAT
CAGCGCGCACATCGACCGCCTGCTGGAGCGCGACGCCGGCTTCCATGCGTGCTACGTCGACCTGAACCAGTTCAAGCCGT
TCAACGATCAGTACGGCTACTGGCAGGGCGACGAAGTGCTGAAGTTCGCGGCGACGGTGCTCGCCGGCGTATGCGATCCG
CAGCGGGATTTTCTCGGGCACGTCGGCGGCGACGATTTCCTCGTGCTGTTCCAGCGCGACGACTGGCGCGCGCGGGCGAC
CGACGCGATCGCGCGCTTCAACGACGGCGCGCAGCGCTTCTACACGCAGGCCGACCGGCTCGCGGGCGGGCTGCGCGGCG
AGGACCGCCACGGCAACCCCGCGTTCTTCGGCTTCGTGACGATGGCGATCGGCGCGGTCGGCGTGCCGGCAGGCGCGCAC
GGCGCGATGCGCTACGGCAGCGACGAGATCGCGTCGGTCGCGGCGCTCGCGAAGCGGCGGGCGAAACAGCAGCCGGGCGG
GCTCGCGGTCGTCGACCTCGATGCGGGGCGCGCGGCGCTGCGCGAGCGCGGGGAGCCGCCGCTCGCGGCGGCGGGTTGA

Upstream 100 bases:

>100_bases
CCGCACCATCGACGTGCATCGCGTCACGAAATCTTCATTCAATTCTTCGCGCGCGCTGCCGTTAAAGTCGGGCGTCCCGT
CGCCTCGGCCGCCCTCCTCC

Downstream 100 bases:

>100_bases
ATGGGAGGCTCACCTTGCCTTTTCCGCGTTTTGTTTAGTATTTTTAGTAACGGCGTTTTCGCAGATTAGCACGTAAAAAC
CCGTTATTTCCGGGTATTCC

Product: diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 612; Mature: 611

Protein sequence:

>612_residues
MPAPHPDSSVAPTTRLIAERALAAVFQPIVDLGSGTVVGYEGLIRGPSGTDLEPPAALFAQAARDGTTIALEQAAALACL
DAFAALGCDGKLFLNFSAGTIVQLVRERERVRQLLGRAGVGAERIVIELTEQTAMPDVARIEPAVASLRDAGIQFALDDY
GTANASMNLWLRLHPDVVKIDRFFIHDIARDPLKFEAVRAMQHFAHASGAQLIAEGIENASDLIVVRDMGICCVQGFLLG
RPNARPSPVVAPAARDAIRTPHIAVFPGATRTARPAGTIAAKMLVPAPALPRDATSNDVLDLFNRMPGLHAVALVERGRP
VALVNRRGFIDRFTLPYHREVFGKKPCLQFANDAPLMIDNATSVEQLAMLLASHDQRYLADGFVITEHGRYLGLGTGESL
VRAVTEMRIEAARYANPLTFLPGNIPISAHIDRLLERDAGFHACYVDLNQFKPFNDQYGYWQGDEVLKFAATVLAGVCDP
QRDFLGHVGGDDFLVLFQRDDWRARATDAIARFNDGAQRFYTQADRLAGGLRGEDRHGNPAFFGFVTMAIGAVGVPAGAH
GAMRYGSDEIASVAALAKRRAKQQPGGLAVVDLDAGRAALRERGEPPLAAAG

Sequences:

>Translated_612_residues
MPAPHPDSSVAPTTRLIAERALAAVFQPIVDLGSGTVVGYEGLIRGPSGTDLEPPAALFAQAARDGTTIALEQAAALACL
DAFAALGCDGKLFLNFSAGTIVQLVRERERVRQLLGRAGVGAERIVIELTEQTAMPDVARIEPAVASLRDAGIQFALDDY
GTANASMNLWLRLHPDVVKIDRFFIHDIARDPLKFEAVRAMQHFAHASGAQLIAEGIENASDLIVVRDMGICCVQGFLLG
RPNARPSPVVAPAARDAIRTPHIAVFPGATRTARPAGTIAAKMLVPAPALPRDATSNDVLDLFNRMPGLHAVALVERGRP
VALVNRRGFIDRFTLPYHREVFGKKPCLQFANDAPLMIDNATSVEQLAMLLASHDQRYLADGFVITEHGRYLGLGTGESL
VRAVTEMRIEAARYANPLTFLPGNIPISAHIDRLLERDAGFHACYVDLNQFKPFNDQYGYWQGDEVLKFAATVLAGVCDP
QRDFLGHVGGDDFLVLFQRDDWRARATDAIARFNDGAQRFYTQADRLAGGLRGEDRHGNPAFFGFVTMAIGAVGVPAGAH
GAMRYGSDEIASVAALAKRRAKQQPGGLAVVDLDAGRAALRERGEPPLAAAG
>Mature_611_residues
PAPHPDSSVAPTTRLIAERALAAVFQPIVDLGSGTVVGYEGLIRGPSGTDLEPPAALFAQAARDGTTIALEQAAALACLD
AFAALGCDGKLFLNFSAGTIVQLVRERERVRQLLGRAGVGAERIVIELTEQTAMPDVARIEPAVASLRDAGIQFALDDYG
TANASMNLWLRLHPDVVKIDRFFIHDIARDPLKFEAVRAMQHFAHASGAQLIAEGIENASDLIVVRDMGICCVQGFLLGR
PNARPSPVVAPAARDAIRTPHIAVFPGATRTARPAGTIAAKMLVPAPALPRDATSNDVLDLFNRMPGLHAVALVERGRPV
ALVNRRGFIDRFTLPYHREVFGKKPCLQFANDAPLMIDNATSVEQLAMLLASHDQRYLADGFVITEHGRYLGLGTGESLV
RAVTEMRIEAARYANPLTFLPGNIPISAHIDRLLERDAGFHACYVDLNQFKPFNDQYGYWQGDEVLKFAATVLAGVCDPQ
RDFLGHVGGDDFLVLFQRDDWRARATDAIARFNDGAQRFYTQADRLAGGLRGEDRHGNPAFFGFVTMAIGAVGVPAGAHG
AMRYGSDEIASVAALAKRRAKQQPGGLAVVDLDAGRAALRERGEPPLAAAG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1790496, Length=234, Percent_Identity=26.0683760683761, Blast_Score=90, Evalue=5e-19,
Organism=Escherichia coli, GI1788849, Length=149, Percent_Identity=31.5436241610738, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI87082096, Length=134, Percent_Identity=29.1044776119403, Blast_Score=79, Evalue=1e-15,
Organism=Escherichia coli, GI1787541, Length=232, Percent_Identity=29.3103448275862, Blast_Score=75, Evalue=8e-15,
Organism=Escherichia coli, GI87081743, Length=245, Percent_Identity=27.3469387755102, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI1786507, Length=221, Percent_Identity=25.7918552036199, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI87081845, Length=236, Percent_Identity=26.6949152542373, Blast_Score=69, Evalue=9e-13,
Organism=Escherichia coli, GI1787410, Length=230, Percent_Identity=25.6521739130435, Blast_Score=67, Evalue=4e-12,
Organism=Escherichia coli, GI1787055, Length=231, Percent_Identity=26.4069264069264, Blast_Score=66, Evalue=8e-12,
Organism=Escherichia coli, GI87081980, Length=121, Percent_Identity=30.5785123966942, Blast_Score=65, Evalue=2e-11,
Organism=Escherichia coli, GI226510982, Length=237, Percent_Identity=29.535864978903, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 65794; Mature: 65663

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPAPHPDSSVAPTTRLIAERALAAVFQPIVDLGSGTVVGYEGLIRGPSGTDLEPPAALFA
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCEEECCCCCCCCCHHHHHH
QAARDGTTIALEQAAALACLDAFAALGCDGKLFLNFSAGTIVQLVRERERVRQLLGRAGV
HHHCCCCEEEHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCC
GAERIVIELTEQTAMPDVARIEPAVASLRDAGIQFALDDYGTANASMNLWLRLHPDVVKI
CCCEEEEEEECHHCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCEEEEEEECCCHHHH
DRFFIHDIARDPLKFEAVRAMQHFAHASGAQLIAEGIENASDLIVVRDMGICCVQGFLLG
HHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHC
RPNARPSPVVAPAARDAIRTPHIAVFPGATRTARPAGTIAAKMLVPAPALPRDATSNDVL
CCCCCCCCEECCCHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHH
DLFNRMPGLHAVALVERGRPVALVNRRGFIDRFTLPYHREVFGKKPCLQFANDAPLMIDN
HHHHHCCCCEEEHHHHCCCCEEEEECCCCCCCCCCCHHHHHHCCCCHHHHCCCCCEEEEC
ATSVEQLAMLLASHDQRYLADGFVITEHGRYLGLGTGESLVRAVTEMRIEAARYANPLTF
CCCHHHHHHHHHHCCCCEECCCEEEEECCCEEECCCHHHHHHHHHHHHHHHHHHCCCCEE
LPGNIPISAHIDRLLERDAGFHACYVDLNQFKPFNDQYGYWQGDEVLKFAATVLAGVCDP
CCCCCCHHHHHHHHHHHCCCCEEEEEEHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
QRDFLGHVGGDDFLVLFQRDDWRARATDAIARFNDGAQRFYTQADRLAGGLRGEDRHGNP
CHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCC
AFFGFVTMAIGAVGVPAGAHGAMRYGSDEIASVAALAKRRAKQQPGGLAVVDLDAGRAAL
HHHHHHHHHHHHHCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHH
RERGEPPLAAAG
HHCCCCCCCCCC
>Mature Secondary Structure 
PAPHPDSSVAPTTRLIAERALAAVFQPIVDLGSGTVVGYEGLIRGPSGTDLEPPAALFA
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCEEECCCCCCCCCHHHHHH
QAARDGTTIALEQAAALACLDAFAALGCDGKLFLNFSAGTIVQLVRERERVRQLLGRAGV
HHHCCCCEEEHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCC
GAERIVIELTEQTAMPDVARIEPAVASLRDAGIQFALDDYGTANASMNLWLRLHPDVVKI
CCCEEEEEEECHHCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCEEEEEEECCCHHHH
DRFFIHDIARDPLKFEAVRAMQHFAHASGAQLIAEGIENASDLIVVRDMGICCVQGFLLG
HHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHC
RPNARPSPVVAPAARDAIRTPHIAVFPGATRTARPAGTIAAKMLVPAPALPRDATSNDVL
CCCCCCCCEECCCHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHH
DLFNRMPGLHAVALVERGRPVALVNRRGFIDRFTLPYHREVFGKKPCLQFANDAPLMIDN
HHHHHCCCCEEEHHHHCCCCEEEEECCCCCCCCCCCHHHHHHCCCCHHHHCCCCCEEEEC
ATSVEQLAMLLASHDQRYLADGFVITEHGRYLGLGTGESLVRAVTEMRIEAARYANPLTF
CCCHHHHHHHHHHCCCCEECCCEEEEECCCEEECCCHHHHHHHHHHHHHHHHHHCCCCEE
LPGNIPISAHIDRLLERDAGFHACYVDLNQFKPFNDQYGYWQGDEVLKFAATVLAGVCDP
CCCCCCHHHHHHHHHHHCCCCEEEEEEHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
QRDFLGHVGGDDFLVLFQRDDWRARATDAIARFNDGAQRFYTQADRLAGGLRGEDRHGNP
CHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCC
AFFGFVTMAIGAVGVPAGAHGAMRYGSDEIASVAALAKRRAKQQPGGLAVVDLDAGRAAL
HHHHHHHHHHHHHCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHH
RERGEPPLAAAG
HHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1661370 [H]