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The map label for this gene is cydB [H]

Identifier: 115352929

GI number: 115352929

Start: 3171771

End: 3172907

Strand: Direct

Name: cydB [H]

Synonym: Bamb_2878

Alternate gene names: 115352929

Gene position: 3171771-3172907 (Clockwise)

Preceding gene: 115352928

Following gene: 115352930

Centisome position: 89.18

GC content: 67.19

Gene sequence:

>1137_bases
ATGGACTATGCAACTCTCAAGCTGATCTGGTGGCTGCTCGTCGGCGTGCTGCTGATCGGCTTCGCCGTCACCGACGGCTT
CGACATGGGCGCGACCGCGCTGCTGCCGTTCCTCGGCAAGACCGACGACGAGCGCCGCATCATCGTCAACACGGTCGGCG
CGACGTGGGAAGGCAACCAGGTGTGGCTGATCACGGCCGGCGGCGCGATGTTCGCCGCGTGGCCGCTCGTCTACGCCGCG
TCGTTCTCCGGCTTCTACTTCGCGATGCTGCTCGTGCTGTTCGCGCTGTTCTTCCGGCCGGTCGGCTTCGACTATCGCAG
CAAGCGGCCCGACCCGCGCTGGCGCGCGGGCTGGGACTGGGGCCTGTTCGTCGGCGGCTTCGTGCCGGCGCTGGTGTTCG
GCGTCGCGTTCGGCAACCTGCTGCAGGGCGTGCCGTTCAAGTTCGACAGCGACCTGCGCGTGACCTACTACGGCGGCTTC
TGGGCGCTGCTGAACCCGTTCGCGCTGCTCTGCGGGCTCGTCAGCCTCACGATGCTCGTCGCGCACGGCGCCGCGTTCAT
CAAGATGAAGACCGACGGCGTGATCGCGCGCCGCGCGTCGATCGCGCTGCGCGTGTCGGCGCTCCTGGCGGTCGTGCTGT
TCGTGCTGGCCGGCGTGCTGGTCGCATCGACGATCGGCGGCTTCCACATCACGCACGCCGCGCCGAACGACACGGTCGCG
AACCCGCTGCTGAAGGATGTCGCCGCCGGCTCCGGCCTGTGGCTGGCGAACTACGGCGAGTATCCGTGGATGATGGCGGC
GCCGCTGGTCGGGATCGCGGGCGGCCTGCTCGCGCTGCTGCTCGCCGGCTCCCGACAGGAAAAGACGGCGTTCTTCTGCA
CCGGCCTGATGATCACCGGCGTGATCCTGACCGCGGGCTTCTCGATGTTCCCGTTCATCATGCCGTCGTCGCTCGACCCG
CGCAGCAGCCTGACCGTGTGGGATTCGACGTCGAGCCACATGACGCTGCAGGTGATGTTGTTCGCGGTGATCGTGTTCCT
GCCGATCGTCCTGCTCTACACGAGCTGGGTCTATCGCGTGATGCGCGGCAAGGTCACGCGCCAGACGCTCGAAGAGAACG
AACACTCGATGTATTGA

Upstream 100 bases:

>100_bases
GGCCCGTCGTCGCTGCATACCGGCCGCTATCACCACGAAATCGCCGCCGGCGAGCGTGCCACGGTTTGAGCACGCGCCCG
CAACGGAACAAGGAATCGCT

Downstream 100 bases:

>100_bases
ACCCGGCCGGGGGTGCGCACGCGCCCTCGCCCACCGTTTCGCAAGGAGTCGGATCATGTGGTATTTCAGCTGGATTCTCG
GTATCGGCGTCGCGCTGTCG

Product: cytochrome d ubiquinol oxidase subunit II

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit II; Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 378; Mature: 378

Protein sequence:

>378_residues
MDYATLKLIWWLLVGVLLIGFAVTDGFDMGATALLPFLGKTDDERRIIVNTVGATWEGNQVWLITAGGAMFAAWPLVYAA
SFSGFYFAMLLVLFALFFRPVGFDYRSKRPDPRWRAGWDWGLFVGGFVPALVFGVAFGNLLQGVPFKFDSDLRVTYYGGF
WALLNPFALLCGLVSLTMLVAHGAAFIKMKTDGVIARRASIALRVSALLAVVLFVLAGVLVASTIGGFHITHAAPNDTVA
NPLLKDVAAGSGLWLANYGEYPWMMAAPLVGIAGGLLALLLAGSRQEKTAFFCTGLMITGVILTAGFSMFPFIMPSSLDP
RSSLTVWDSTSSHMTLQVMLFAVIVFLPIVLLYTSWVYRVMRGKVTRQTLEENEHSMY

Sequences:

>Translated_378_residues
MDYATLKLIWWLLVGVLLIGFAVTDGFDMGATALLPFLGKTDDERRIIVNTVGATWEGNQVWLITAGGAMFAAWPLVYAA
SFSGFYFAMLLVLFALFFRPVGFDYRSKRPDPRWRAGWDWGLFVGGFVPALVFGVAFGNLLQGVPFKFDSDLRVTYYGGF
WALLNPFALLCGLVSLTMLVAHGAAFIKMKTDGVIARRASIALRVSALLAVVLFVLAGVLVASTIGGFHITHAAPNDTVA
NPLLKDVAAGSGLWLANYGEYPWMMAAPLVGIAGGLLALLLAGSRQEKTAFFCTGLMITGVILTAGFSMFPFIMPSSLDP
RSSLTVWDSTSSHMTLQVMLFAVIVFLPIVLLYTSWVYRVMRGKVTRQTLEENEHSMY
>Mature_378_residues
MDYATLKLIWWLLVGVLLIGFAVTDGFDMGATALLPFLGKTDDERRIIVNTVGATWEGNQVWLITAGGAMFAAWPLVYAA
SFSGFYFAMLLVLFALFFRPVGFDYRSKRPDPRWRAGWDWGLFVGGFVPALVFGVAFGNLLQGVPFKFDSDLRVTYYGGF
WALLNPFALLCGLVSLTMLVAHGAAFIKMKTDGVIARRASIALRVSALLAVVLFVLAGVLVASTIGGFHITHAAPNDTVA
NPLLKDVAAGSGLWLANYGEYPWMMAAPLVGIAGGLLALLLAGSRQEKTAFFCTGLMITGVILTAGFSMFPFIMPSSLDP
RSSLTVWDSTSSHMTLQVMLFAVIVFLPIVLLYTSWVYRVMRGKVTRQTLEENEHSMY

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli AppB [H]

Homologues:

Organism=Escherichia coli, GI1786954, Length=378, Percent_Identity=53.968253968254, Blast_Score=415, Evalue=1e-117,
Organism=Escherichia coli, GI1787213, Length=377, Percent_Identity=54.1114058355438, Blast_Score=400, Evalue=1e-113,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 41292; Mature: 41292

Theoretical pI: Translated: 8.95; Mature: 8.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDYATLKLIWWLLVGVLLIGFAVTDGFDMGATALLPFLGKTDDERRIIVNTVGATWEGNQ
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCCCE
VWLITAGGAMFAAWPLVYAASFSGFYFAMLLVLFALFFRPVGFDYRSKRPDPRWRAGWDW
EEEEEECCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCH
GLFVGGFVPALVFGVAFGNLLQGVPFKFDSDLRVTYYGGFWALLNPFALLCGLVSLTMLV
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHH
AHGAAFIKMKTDGVIARRASIALRVSALLAVVLFVLAGVLVASTIGGFHITHAAPNDTVA
HCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHH
NPLLKDVAAGSGLWLANYGEYPWMMAAPLVGIAGGLLALLLAGSRQEKTAFFCTGLMITG
HHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
VILTAGFSMFPFIMPSSLDPRSSLTVWDSTSSHMTLQVMLFAVIVFLPIVLLYTSWVYRV
HHHHCCHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
MRGKVTRQTLEENEHSMY
HHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MDYATLKLIWWLLVGVLLIGFAVTDGFDMGATALLPFLGKTDDERRIIVNTVGATWEGNQ
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCCCE
VWLITAGGAMFAAWPLVYAASFSGFYFAMLLVLFALFFRPVGFDYRSKRPDPRWRAGWDW
EEEEEECCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCH
GLFVGGFVPALVFGVAFGNLLQGVPFKFDSDLRVTYYGGFWALLNPFALLCGLVSLTMLV
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHH
AHGAAFIKMKTDGVIARRASIALRVSALLAVVLFVLAGVLVASTIGGFHITHAAPNDTVA
HCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHH
NPLLKDVAAGSGLWLANYGEYPWMMAAPLVGIAGGLLALLLAGSRQEKTAFFCTGLMITG
HHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
VILTAGFSMFPFIMPSSLDPRSSLTVWDSTSSHMTLQVMLFAVIVFLPIVLLYTSWVYRV
HHHHCCHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
MRGKVTRQTLEENEHSMY
HHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]