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The map label for this gene is cydA [H]

Identifier: 115352928

GI number: 115352928

Start: 3170162

End: 3171739

Strand: Direct

Name: cydA [H]

Synonym: Bamb_2877

Alternate gene names: 115352928

Gene position: 3170162-3171739 (Clockwise)

Preceding gene: 115352927

Following gene: 115352929

Centisome position: 89.14

GC content: 63.62

Gene sequence:

>1578_bases
ATGATAAGTAGCGAAGTCGTCGATCTGTCACGTCTACAGTTCGGCATCACGGCGCTCTACCACTTCCTGTTCGTGCCGCT
GACGCTCGGCCTGTCCTGGCTGCTCGTCATCATGGAAGCCGTCTACGTGATGACGGGCAAGCAGGTCTACAAGGACATGA
CCCAGTTCTGGGGCAAGCTGTTCGGGATCAACTTCGCGATGGGCGTGACGACCGGCATCACGCTCGAATTTCAGTTCGGC
ACGAACTGGTCGTACTACTCGCACTACGTCGGCGACATCTTCGGCGTGCCGCTCGCGGTGGAAGGCCTGATGGCGTTCTT
CCTCGAATCGACGTTCGTCGGCCTGTTCTTCTTCGGCTGGAACCGCCTGTCGAAGGTCAAGCACCTGATGGTCACGTTCC
TCGTCGCGCTGGGCTCGAACCTGTCCGCGCTGTGGATTCTCGTCGCGAACGGCTGGATGAACAATCCAGTCGGCGCGGCG
TTCAACTACCAGACGATGCGCATGGAGATGACGAGCCTGTTCGACGTGCTGTTCAACCCGGTCGCGCAGGTGAAGTTCGT
TCACACCGTGTCGGCCGGCTATGTGTCGGCGGCGATGTTCGTGCTCGGCGTGTCGTCGTGGTACCTGCTGAAGAAGCGCG
ACGTCGACTTCGCGCTGCGCTCGTTCGCGGTCGCGGCCGGCTTCGGCCTCGCGGCGACGCTCTGCGTGATCGTGCTCGGC
GACGAATCGGGCTATACGACCGGCGAAGTGCAGAAGATGAAGCTCGCCGCGATCGAATCCGAATGGGAAACGCAGCCGGC
GCCCGCGTCGTTCACGCTGATCGGCATCCCCAATCAAGCAGAGCAGCGCACCGACTATGCGATCAAGATCCCGTACGCGC
TCGGCCTGATCGCGACGCGCTCGATCGACGAACCGGTGATCGGCCTGCGCGAGCTCGCGAAGCGCAGCGAGGAGCACATC
CAGAGCGGGATGCTCGCGTACGGCGCGCTGCAGAAGATCAAGCAGGGCGACACGAGCGACGCGACCCGCGCGTTGTTCGA
CGAGCACAAGCAGTATCTCGGCTACGGGCTGATGCTCAAGCAGTTCACGCCGAACGTGACGGACGCGACGCCCGAGCAGA
TCAAGGCCGCCGCGAAGAAGACGATCCCGCCGGTCGCGCCCGTGTTCTTCTCGTTCCGGATCATGGTGGCCCTGGGCTTC
CTGTTCGTCGCGACGTTCGTTGCCGCGTTCTGGTTCTGCGCGCGCCGCGAGCTGCTGCAGGACAACCGCCGCTGGTTCCT
CCGCTACGCGGTGTGGGCGATTCCGCTGCCGTGGATCGCGATCGAATTCGGCTGGATCGTCGCCGAGCTCGGCCGCCAGC
CGTGGACGATCGCCGGCGTGCTGCCGACGCATCTGTCCGCGTCGAGCCTGCAGCCGAGCGACCTGTACCTGAGTCTCGCC
GGCTTCATCCTGTTCTACACCGCGCTGTTCGTCATCGAGATCAAGCTGATGTTCAAGTACGCGCGCCTCGGCCCGTCGTC
GCTGCATACCGGCCGCTATCACCACGAAATCGCCGCCGGCGAGCGTGCCACGGTTTGA

Upstream 100 bases:

>100_bases
TTCAATCATCCGCAGGCCGAGCACATGTCACTGCCGCCTGCCGTCGTCGCCGAGAAGCTGCTCTCGGTGCCGGCTCCTGC
ATCTACCGAGGGAGACCACC

Downstream 100 bases:

>100_bases
GCACGCGCCCGCAACGGAACAAGGAATCGCTATGGACTATGCAACTCTCAAGCTGATCTGGTGGCTGCTCGTCGGCGTGC
TGCTGATCGGCTTCGCCGTC

Product: cytochrome bd ubiquinol oxidase subunit I

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 525; Mature: 525

Protein sequence:

>525_residues
MISSEVVDLSRLQFGITALYHFLFVPLTLGLSWLLVIMEAVYVMTGKQVYKDMTQFWGKLFGINFAMGVTTGITLEFQFG
TNWSYYSHYVGDIFGVPLAVEGLMAFFLESTFVGLFFFGWNRLSKVKHLMVTFLVALGSNLSALWILVANGWMNNPVGAA
FNYQTMRMEMTSLFDVLFNPVAQVKFVHTVSAGYVSAAMFVLGVSSWYLLKKRDVDFALRSFAVAAGFGLAATLCVIVLG
DESGYTTGEVQKMKLAAIESEWETQPAPASFTLIGIPNQAEQRTDYAIKIPYALGLIATRSIDEPVIGLRELAKRSEEHI
QSGMLAYGALQKIKQGDTSDATRALFDEHKQYLGYGLMLKQFTPNVTDATPEQIKAAAKKTIPPVAPVFFSFRIMVALGF
LFVATFVAAFWFCARRELLQDNRRWFLRYAVWAIPLPWIAIEFGWIVAELGRQPWTIAGVLPTHLSASSLQPSDLYLSLA
GFILFYTALFVIEIKLMFKYARLGPSSLHTGRYHHEIAAGERATV

Sequences:

>Translated_525_residues
MISSEVVDLSRLQFGITALYHFLFVPLTLGLSWLLVIMEAVYVMTGKQVYKDMTQFWGKLFGINFAMGVTTGITLEFQFG
TNWSYYSHYVGDIFGVPLAVEGLMAFFLESTFVGLFFFGWNRLSKVKHLMVTFLVALGSNLSALWILVANGWMNNPVGAA
FNYQTMRMEMTSLFDVLFNPVAQVKFVHTVSAGYVSAAMFVLGVSSWYLLKKRDVDFALRSFAVAAGFGLAATLCVIVLG
DESGYTTGEVQKMKLAAIESEWETQPAPASFTLIGIPNQAEQRTDYAIKIPYALGLIATRSIDEPVIGLRELAKRSEEHI
QSGMLAYGALQKIKQGDTSDATRALFDEHKQYLGYGLMLKQFTPNVTDATPEQIKAAAKKTIPPVAPVFFSFRIMVALGF
LFVATFVAAFWFCARRELLQDNRRWFLRYAVWAIPLPWIAIEFGWIVAELGRQPWTIAGVLPTHLSASSLQPSDLYLSLA
GFILFYTALFVIEIKLMFKYARLGPSSLHTGRYHHEIAAGERATV
>Mature_525_residues
MISSEVVDLSRLQFGITALYHFLFVPLTLGLSWLLVIMEAVYVMTGKQVYKDMTQFWGKLFGINFAMGVTTGITLEFQFG
TNWSYYSHYVGDIFGVPLAVEGLMAFFLESTFVGLFFFGWNRLSKVKHLMVTFLVALGSNLSALWILVANGWMNNPVGAA
FNYQTMRMEMTSLFDVLFNPVAQVKFVHTVSAGYVSAAMFVLGVSSWYLLKKRDVDFALRSFAVAAGFGLAATLCVIVLG
DESGYTTGEVQKMKLAAIESEWETQPAPASFTLIGIPNQAEQRTDYAIKIPYALGLIATRSIDEPVIGLRELAKRSEEHI
QSGMLAYGALQKIKQGDTSDATRALFDEHKQYLGYGLMLKQFTPNVTDATPEQIKAAAKKTIPPVAPVFFSFRIMVALGF
LFVATFVAAFWFCARRELLQDNRRWFLRYAVWAIPLPWIAIEFGWIVAELGRQPWTIAGVLPTHLSASSLQPSDLYLSLA
GFILFYTALFVIEIKLMFKYARLGPSSLHTGRYHHEIAAGERATV

Specific function: May be involved in maintaining the low intracellular oxygen concentration required for nitrogen fixation [H]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI87081779, Length=512, Percent_Identity=65.8203125, Blast_Score=716, Evalue=0.0,
Organism=Escherichia coli, GI1787212, Length=506, Percent_Identity=55.1383399209486, Blast_Score=573, Evalue=1e-165,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 58648; Mature: 58648

Theoretical pI: Translated: 8.52; Mature: 8.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISSEVVDLSRLQFGITALYHFLFVPLTLGLSWLLVIMEAVYVMTGKQVYKDMTQFWGKL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FGINFAMGVTTGITLEFQFGTNWSYYSHYVGDIFGVPLAVEGLMAFFLESTFVGLFFFGW
HCCHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
NRLSKVKHLMVTFLVALGSNLSALWILVANGWMNNPVGAAFNYQTMRMEMTSLFDVLFNP
HHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCH
VAQVKFVHTVSAGYVSAAMFVLGVSSWYLLKKRDVDFALRSFAVAAGFGLAATLCVIVLG
HHHEEEHHHHHHHHHHHHHHHHHCCHHEEEECCCHHHHHHHHHHHHHHHHHHHHEEEEEE
DESGYTTGEVQKMKLAAIESEWETQPAPASFTLIGIPNQAEQRTDYAIKIPYALGLIATR
CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHCCCCCEEECCHHHHHHHHC
SIDEPVIGLRELAKRSEEHIQSGMLAYGALQKIKQGDTSDATRALFDEHKQYLGYGLMLK
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
QFTPNVTDATPEQIKAAAKKTIPPVAPVFFSFRIMVALGFLFVATFVAAFWFCARRELLQ
HCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DNRRWFLRYAVWAIPLPWIAIEFGWIVAELGRQPWTIAGVLPTHLSASSLQPSDLYLSLA
CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEECCHHCCCCCCCCCHHHHHHHH
GFILFYTALFVIEIKLMFKYARLGPSSLHTGRYHHEIAAGERATV
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCC
>Mature Secondary Structure
MISSEVVDLSRLQFGITALYHFLFVPLTLGLSWLLVIMEAVYVMTGKQVYKDMTQFWGKL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FGINFAMGVTTGITLEFQFGTNWSYYSHYVGDIFGVPLAVEGLMAFFLESTFVGLFFFGW
HCCHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
NRLSKVKHLMVTFLVALGSNLSALWILVANGWMNNPVGAAFNYQTMRMEMTSLFDVLFNP
HHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCH
VAQVKFVHTVSAGYVSAAMFVLGVSSWYLLKKRDVDFALRSFAVAAGFGLAATLCVIVLG
HHHEEEHHHHHHHHHHHHHHHHHCCHHEEEECCCHHHHHHHHHHHHHHHHHHHHEEEEEE
DESGYTTGEVQKMKLAAIESEWETQPAPASFTLIGIPNQAEQRTDYAIKIPYALGLIATR
CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHCCCCCEEECCHHHHHHHHC
SIDEPVIGLRELAKRSEEHIQSGMLAYGALQKIKQGDTSDATRALFDEHKQYLGYGLMLK
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
QFTPNVTDATPEQIKAAAKKTIPPVAPVFFSFRIMVALGFLFVATFVAAFWFCARRELLQ
HCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DNRRWFLRYAVWAIPLPWIAIEFGWIVAELGRQPWTIAGVLPTHLSASSLQPSDLYLSLA
CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEECCHHCCCCCCCCCHHHHHHHH
GFILFYTALFVIEIKLMFKYARLGPSSLHTGRYHHEIAAGERATV
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1655703; 1660468; 2170336 [H]