| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115352891
Identifier: 115352891
GI number: 115352891
Start: 3135125
End: 3136207
Strand: Direct
Name: 115352891
Synonym: Bamb_2840
Alternate gene names: NA
Gene position: 3135125-3136207 (Clockwise)
Preceding gene: 115352890
Following gene: 115352897
Centisome position: 88.15
GC content: 64.64
Gene sequence:
>1083_bases ATGGAGAAGCAACAAGAGTCGCGCGACGCGCAGAGCCGCGAGCCCCACCTGCGCAGCGTGCGGCTGACGAGCGACTTCAG TCTGCCGAAGCTGTCGGCGATCGAGATCGGCAGCTATCTGTTCGCCCTCGTCGCGATGGTGCTCGTCATCGAACTCAAGC TGCTGGGCGGGCTGCTGGCCGGCCTGCTGGTCTATCAGCTGATCCACACGATCGCCCCGGTGATCGAACGCCACACGACA AGCATGCGCGCGCGCTGGGTCTCCGTCGTGCTGCTGTCGATCGCGATCGTCGGCGGGCTCACGGGCCTGACGATCGGCAT CATCGATCACTTCGAGCACACGGTGCCGAACCTGCAGAGCCTGCTCGGCCAGCTGATGCAGATCGTCGAGCAGACGCGCG CGCGCACGCCGGCCTGGATCGCGAACCTGCTGCCCGTCGACGTCGAACAGATGAAAGCCAAGGCGGCTCTGCTGATGCAC TCGCACATGGATCAGCTCCAGCAAGGCGGCAAGAGCGTCGCGCGCGGCTTCGGCCATGTGCTGTTCGGGATGATCATCGG CGCGATGATCGCGATCGGCGTCGAGCACGGCAAGGTGCGCCGGCCGCTGTCCACCGCGCTCGTCACGCGCGTGTCGCGCT TCGCCGAATCGTTCCGCCGGATCGTGTTCGCGCAGATCAAGATCTCGGCGATCAACGCGGCCTTCACCGGCATCTACCTG CTCGTCGCGCTGCCGATCTTCCACCAGCGGCTGCCGCTGTCCAAAACGCTCGTGCTCGTCACGTTCATCGTCGGGCTGCT GCCGGTGATCGGCAACCTGATCTCTAACACGCTGATCGTCGCGGTGTCGCTGTCGGTCAGCATGGGCACCGCGATCGCAT CGCTCGCGTTCCTCGTCGTGATCCACAAGCTCGAATATTTCCTGAACGCGAAGATCATCGGCGGCCAGATCGAGTCGCGC GCATGGGAGCTGCTGCTCGCGATGCTGATCATGGAAGCCGCGTTCGGGCTGCCGGGCGTGATTGCCGCGCCGATCTTCTA TGCGTACCTGAAGCGCGAGCTGTACATGCTGCGGCTGATCTGA
Upstream 100 bases:
>100_bases GTCGTAAGGTTCGCTATCCGCACCAATCCGGTGCGACGCCGGGCGAGCACCGTCCTGCCGCCCACCGCGCGGCGCGACAC ACGAACGACAGGAATCCACG
Downstream 100 bases:
>100_bases CGCGCCGCGCGTCACGCGATAAACAAAAACGCCGCGCCCCATCCAGGGCGCGGCGTTGTTACGTGCGGGGCCGGCTGATG GCCGATGGCCGACGCGCACC
Product: putative transporter
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 360; Mature: 360
Protein sequence:
>360_residues MEKQQESRDAQSREPHLRSVRLTSDFSLPKLSAIEIGSYLFALVAMVLVIELKLLGGLLAGLLVYQLIHTIAPVIERHTT SMRARWVSVVLLSIAIVGGLTGLTIGIIDHFEHTVPNLQSLLGQLMQIVEQTRARTPAWIANLLPVDVEQMKAKAALLMH SHMDQLQQGGKSVARGFGHVLFGMIIGAMIAIGVEHGKVRRPLSTALVTRVSRFAESFRRIVFAQIKISAINAAFTGIYL LVALPIFHQRLPLSKTLVLVTFIVGLLPVIGNLISNTLIVAVSLSVSMGTAIASLAFLVVIHKLEYFLNAKIIGGQIESR AWELLLAMLIMEAAFGLPGVIAAPIFYAYLKRELYMLRLI
Sequences:
>Translated_360_residues MEKQQESRDAQSREPHLRSVRLTSDFSLPKLSAIEIGSYLFALVAMVLVIELKLLGGLLAGLLVYQLIHTIAPVIERHTT SMRARWVSVVLLSIAIVGGLTGLTIGIIDHFEHTVPNLQSLLGQLMQIVEQTRARTPAWIANLLPVDVEQMKAKAALLMH SHMDQLQQGGKSVARGFGHVLFGMIIGAMIAIGVEHGKVRRPLSTALVTRVSRFAESFRRIVFAQIKISAINAAFTGIYL LVALPIFHQRLPLSKTLVLVTFIVGLLPVIGNLISNTLIVAVSLSVSMGTAIASLAFLVVIHKLEYFLNAKIIGGQIESR AWELLLAMLIMEAAFGLPGVIAAPIFYAYLKRELYMLRLI >Mature_360_residues MEKQQESRDAQSREPHLRSVRLTSDFSLPKLSAIEIGSYLFALVAMVLVIELKLLGGLLAGLLVYQLIHTIAPVIERHTT SMRARWVSVVLLSIAIVGGLTGLTIGIIDHFEHTVPNLQSLLGQLMQIVEQTRARTPAWIANLLPVDVEQMKAKAALLMH SHMDQLQQGGKSVARGFGHVLFGMIIGAMIAIGVEHGKVRRPLSTALVTRVSRFAESFRRIVFAQIKISAINAAFTGIYL LVALPIFHQRLPLSKTLVLVTFIVGLLPVIGNLISNTLIVAVSLSVSMGTAIASLAFLVVIHKLEYFLNAKIIGGQIESR AWELLLAMLIMEAAFGLPGVIAAPIFYAYLKRELYMLRLI
Specific function: Unknown
COG id: COG0628
COG function: function code R; Predicted permease
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39492; Mature: 39492
Theoretical pI: Translated: 10.58; Mature: 10.58
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEKQQESRDAQSREPHLRSVRLTSDFSLPKLSAIEIGSYLFALVAMVLVIELKLLGGLLA CCCCHHHCCHHCCCCCHHEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GLLVYQLIHTIAPVIERHTTSMRARWVSVVLLSIAIVGGLTGLTIGIIDHFEHTVPNLQS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH LLGQLMQIVEQTRARTPAWIANLLPVDVEQMKAKAALLMHSHMDQLQQGGKSVARGFGHV HHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LFGMIIGAMIAIGVEHGKVRRPLSTALVTRVSRFAESFRRIVFAQIKISAINAAFTGIYL HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LVALPIFHQRLPLSKTLVLVTFIVGLLPVIGNLISNTLIVAVSLSVSMGTAIASLAFLVV HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IHKLEYFLNAKIIGGQIESRAWELLLAMLIMEAAFGLPGVIAAPIFYAYLKRELYMLRLI HHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MEKQQESRDAQSREPHLRSVRLTSDFSLPKLSAIEIGSYLFALVAMVLVIELKLLGGLLA CCCCHHHCCHHCCCCCHHEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GLLVYQLIHTIAPVIERHTTSMRARWVSVVLLSIAIVGGLTGLTIGIIDHFEHTVPNLQS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH LLGQLMQIVEQTRARTPAWIANLLPVDVEQMKAKAALLMHSHMDQLQQGGKSVARGFGHV HHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LFGMIIGAMIAIGVEHGKVRRPLSTALVTRVSRFAESFRRIVFAQIKISAINAAFTGIYL HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LVALPIFHQRLPLSKTLVLVTFIVGLLPVIGNLISNTLIVAVSLSVSMGTAIASLAFLVV HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IHKLEYFLNAKIIGGQIESRAWELLLAMLIMEAAFGLPGVIAAPIFYAYLKRELYMLRLI HHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA