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The map label for this gene is nodB [H]

Identifier: 115352868

GI number: 115352868

Start: 3108578

End: 3109480

Strand: Direct

Name: nodB [H]

Synonym: Bamb_2817

Alternate gene names: 115352868

Gene position: 3108578-3109480 (Clockwise)

Preceding gene: 115352867

Following gene: 115352869

Centisome position: 87.4

GC content: 73.64

Gene sequence:

>903_bases
ATGAACGCGCCGTCATCCGTTTCACCGCCGCAGCCCGGCGATGCGCGCCGCTGGAAGCCAACGCCGCTGATCGCGGGCAC
CGCCGCGCTGCATGCGGGCGCGCTCGCGGCCGTCGTCGCGCAGCCGGCCGCGTGGCCGTGGGCCGCCGGCGGCGTGGTCG
CCTCGCATCTCGCGCTGACGGCCGCCGGCCTGTGGCCGCGCAGCGCATTGCTCGGGCCGAACTGGACGCGGCTGCCGGCC
GGTGCCGGCCGCCGGATCGCGCTGACGATCGACGACGGCCCGGACCCCGACGTCACGCCGCGCGTGCTCGACCTGCTCGA
TCGTTACGATGCACGCGCGACGTTCTTCTGCATCGGCGATCTCGCACGACGCCATCCGCAATGGATCGAAGCGATCATCG
CGCGCGGCCACGCGGTCGAGAACCACAGCCAGCGGCACCGGCATACGTTCTCGCTGTCGGGGCCCGCCGCGCTGCGGCGC
GAAATCGCCGCCGCGCAGCAGACGCTGACCGAGATCTCCGGCATGCGACCGCGCTTCTTCCGCGCGCCGGCCGGCCTGCG
CAATCCGTTTCTCGAGCCGGTGCTCTGCGAGCTCGGGCTGCAGCTCGCCAGCTGGACGCGCCGCGGCTTCGACACGCGCG
AGCACGACGCGGACACCGTCACGCGCCGCCTGCTGAACGGCCTCGCGCCACACGACATCCTGCTCGTGCATGACGGCCAT
GCGGCGCGCGATGCGCGCGGCGAACCGGTCGTGCTCGACGTGCTGCCGGCGTTGCTGCGCGCGGCCGCCGATGCGCGGTT
GCAGTGGACCACGCTGCGCGCCGCGCTTGCGCCCGAAGCGCCCGAAGCGCCCGAAGCGCCCGGCCAGCCGGGCATGCTGG
CACCCCCGTTTGATAAAATCTGA

Upstream 100 bases:

>100_bases
TCGGCCCCGGCGCGATGCTCGCGCTGGCGTTCGCGGCGATTCTCGCGCCGCGCGTCGCGGCCGCGAACGGCCGTCCCCAT
GATCCGACAGGAGCTCGCGC

Downstream 100 bases:

>100_bases
CCATGCGCGGCGCGCCCGCCAGCCCTGCTGCGGCGCCCGTTCCGGCCACCGGATGCGACCCTCGTGAAACCTCTGCTGCT
CTCGCACTTCACCGCCACCA

Product: polysaccharide deacetylase

Products: NA

Alternate protein names: Nodulation protein B [H]

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MNAPSSVSPPQPGDARRWKPTPLIAGTAALHAGALAAVVAQPAAWPWAAGGVVASHLALTAAGLWPRSALLGPNWTRLPA
GAGRRIALTIDDGPDPDVTPRVLDLLDRYDARATFFCIGDLARRHPQWIEAIIARGHAVENHSQRHRHTFSLSGPAALRR
EIAAAQQTLTEISGMRPRFFRAPAGLRNPFLEPVLCELGLQLASWTRRGFDTREHDADTVTRRLLNGLAPHDILLVHDGH
AARDARGEPVVLDVLPALLRAAADARLQWTTLRAALAPEAPEAPEAPGQPGMLAPPFDKI

Sequences:

>Translated_300_residues
MNAPSSVSPPQPGDARRWKPTPLIAGTAALHAGALAAVVAQPAAWPWAAGGVVASHLALTAAGLWPRSALLGPNWTRLPA
GAGRRIALTIDDGPDPDVTPRVLDLLDRYDARATFFCIGDLARRHPQWIEAIIARGHAVENHSQRHRHTFSLSGPAALRR
EIAAAQQTLTEISGMRPRFFRAPAGLRNPFLEPVLCELGLQLASWTRRGFDTREHDADTVTRRLLNGLAPHDILLVHDGH
AARDARGEPVVLDVLPALLRAAADARLQWTTLRAALAPEAPEAPEAPGQPGMLAPPFDKI
>Mature_300_residues
MNAPSSVSPPQPGDARRWKPTPLIAGTAALHAGALAAVVAQPAAWPWAAGGVVASHLALTAAGLWPRSALLGPNWTRLPA
GAGRRIALTIDDGPDPDVTPRVLDLLDRYDARATFFCIGDLARRHPQWIEAIIARGHAVENHSQRHRHTFSLSGPAALRR
EIAAAQQTLTEISGMRPRFFRAPAGLRNPFLEPVLCELGLQLASWTRRGFDTREHDADTVTRRLLNGLAPHDILLVHDGH
AARDARGEPVVLDVLPALLRAAADARLQWTTLRAALAPEAPEAPEAPGQPGMLAPPFDKI

Specific function: Is involved in generating a small heat-stable compound (Nod), an acylated oligomer of N-acetylglucosamine, that stimulates mitosis in various plant protoplasts [H]

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 32245; Mature: 32245

Theoretical pI: Translated: 9.48; Mature: 9.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAPSSVSPPQPGDARRWKPTPLIAGTAALHAGALAAVVAQPAAWPWAAGGVVASHLALT
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
AAGLWPRSALLGPNWTRLPAGAGRRIALTIDDGPDPDVTPRVLDLLDRYDARATFFCIGD
HHCCCCCHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEHHH
LARRHPQWIEAIIARGHAVENHSQRHRHTFSLSGPAALRREIAAAQQTLTEISGMRPRFF
HHHHCHHHHHHHHHCCCHHHCHHHHHCEEECCCCHHHHHHHHHHHHHHHHHHHCCCCHHH
RAPAGLRNPFLEPVLCELGLQLASWTRRGFDTREHDADTVTRRLLNGLAPHDILLVHDGH
CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCC
AARDARGEPVVLDVLPALLRAAADARLQWTTLRAALAPEAPEAPEAPGQPGMLAPPFDKI
CCCCCCCCCCHHHHHHHHHHHHHCCCEEHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MNAPSSVSPPQPGDARRWKPTPLIAGTAALHAGALAAVVAQPAAWPWAAGGVVASHLALT
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
AAGLWPRSALLGPNWTRLPAGAGRRIALTIDDGPDPDVTPRVLDLLDRYDARATFFCIGD
HHCCCCCHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEHHH
LARRHPQWIEAIIARGHAVENHSQRHRHTFSLSGPAALRREIAAAQQTLTEISGMRPRFF
HHHHCHHHHHHHHHCCCHHHCHHHHHCEEECCCCHHHHHHHHHHHHHHHHHHHCCCCHHH
RAPAGLRNPFLEPVLCELGLQLASWTRRGFDTREHDADTVTRRLLNGLAPHDILLVHDGH
CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCC
AARDARGEPVVLDVLPALLRAAADARLQWTTLRAALAPEAPEAPEAPGQPGMLAPPFDKI
CCCCCCCCCCHHHHHHHHHHHHHCCCEEHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 4006668; 6336331; 11481432 [H]