| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115352867
Identifier: 115352867
GI number: 115352867
Start: 3106101
End: 3108581
Strand: Direct
Name: 115352867
Synonym: Bamb_2816
Alternate gene names: NA
Gene position: 3106101-3108581 (Clockwise)
Preceding gene: 115352866
Following gene: 115352868
Centisome position: 87.33
GC content: 73.6
Gene sequence:
>2481_bases ATGGACGAACGCACCCGGCCGACCGCTCCCGTCACCCGGCGCCTGCCCGCCTGGCGGCAACGCGCGGTGCTCGTGTGGCT GCTCGCGCTCGTCGCATGCGCGATCGCGATCGCCCGCGCGAATTTCACGGCCGATTTGTCCGCGTTCCTGCCGCGCGCGC CGAGCGCCGGGCAGCGCGTGCTCGTCGAGCAACTGCGCGACGGCATCGTGTCGCGGCTGATCCTCGTCGCGATCGACGGC GGCGATGCGGCCACGCGCGCCGCGCTGTCGCGGCGCGTCGCCGGCACGCTGCGCGCCGACCGGCAATTCTCCGCGATCAA CAACGGCGAGGCCGTGAACGACGCGCGCGACCAGCAGTTCGTGTTCGATCATCGCTACCTGCTGAGCCCGGCCGTCACGC CGCAACGCTTCAGCGCGGACGGCCTGCACCAGGCGCTCGGCGACAGCCTCGACCTGCTGGGCTCGTCGGCGGGCCTCGTC GCGAAGGCGATGCTGCCGCACGACCCGACCGGCGAAGTGACCGCGCTCGTCGACCAGCTCGACAGCGGCGCGCAGCCCGC CGTGCGCGACGGCGTGTGGGCATCGCGCGACGGCACGCGCGCGGTGCTCGTCGTGCAGACGGCCGCCGCCGGCTCCGACA CCGACGCGCAGGCACGCGCGATCGACGCGGTGCGCCGCGCGTTCTCCGCCGCGACGCAGACGCTGCCGAACCCGGCCGCG TACACGCTCGCGATGACCGGCCCCGGCGTGTTCTCGGTCGATACGCGCGACACGATCCGGCACGACGTCGAGCGGCTGTC GACCGCGAGCCTCGTGCTGATCGTCGCGCTGCTGCTGACGCTGTACCGCTCGCCGCGCACGCTCGCGCTGGGGCTGCTGC CGGTGCTGACGGGCATCGCGGCCGGCATCGCGGCGGTCAGCGTCGCGTTCGGCACCGTCCACGGGCTGACGCTCGGCTTC GGCACGACGCTGATCGGCGAGGCCGTCGACTATTCGATCTACCTGTTCGTGCAATCGGCGCAAGTCGGCTCGCGCGGCGC CGCGCGGCCCGCCGACGCGATGCGCGCGTGGCTCGCCGCATACTGGCCGACGATCCGGCTCGGCGTGCTCACGTCCGTGT GCGGCTTCGCGTCGATGCTGTTCTCCGGCTTTCCGGGCCTCGTGCAGCTCGGGCTCTATTCGATCGTCGGGCTGACGGCC GCCGCGCTCGTCACGCGCTACGTGCTGCCGCACCTGCGCGGCGAGCACGTCGCGATTCGCGACGTGTCGCGCATCGGCGC GGTGCTCGCGCGTGCGGCCGCCGCGGCGCCGCGGCTGCGCTGGCCGCTCGCCGTGCTCGTGCTCGCCGCGTGCACGACGC TCGTGCTGCATCGCGAATCTCTGTGGAGCCGCGAGCTCGCGGCGCTCAGCCCCGTTCCCGCCCGCGCGCAGGCACTCGAC GCGCGCCTGCGCGCCGATGTCGGTGCACCGGACGTGCGCTACCTCGTCGTGATTTCCGCGCCGACCGAACAGGCCGCGCT CGAACGCGCGGAACAGGTTGCCGCGCAATTGCAGCCGCTCGTCGATCGCGGCGCGCTCGCGGGCTTCGAAAGTCCCGCGC GCTATCTGCCGAGCGACGCCGCGCAGCGCGCGCGCCAGGCGAGCCTGCCGGACGCGGAGGCGCTCGCCGCCCGCATGCAC GCGGCCGTCGCGAACCAGCCGATCTCGGTCAGGCCCGAGTTGTTCGCACCGTTCGTCGCCGATGTCGAAGCCGCGCGCCA CGCGCCGCTGCTCACGCGCGCCGACCTGCGCGGCACGTCGATGGCGCTCGCCGTCGACGCGTTGCTGACCGAGCGCGCGG GCCGCTGGAGCGCGATGCTGCCGCTGCGCGCGCCGGACGCTACGCGCACTGCGTCAGCCGCCGCGCCGGCACTCGATGTC GCGCCGATCCGCGCGGCCGTCGCGCGCGCCGGCGTACCCGACGCGCTGTTCGTCGACATGAAGGCCGAGGCCGATCGCCT GTACGTGAACTACGTGCACGAGGACATCCGGCTGTCGCTCGCGGGTTTCGCGGCAATCGCCGTGCTGCTGCTGATCGCGC TGCGCTCGCCGCGCCGCGTCGTGCGCGCGCTCGCGCCGCTCGTCGCGGCCGTGATCGTGGTGACGGCCGGCTTCGCGCTC GCCGGCGTGCAACTGACGATCCTGCACCTCGTCGGAATGCTGCTGATCGTCGCGGTCGGCTCGAACTATGCGCTGTTCTT CTGCAAGCGCGACGACGCGCAACCGGTCACGCCGTACACGCTCGTATCGCTGCTGATCGCGAACCTCGCGACGGTCGCCG GCTTCGGCCTGCTCGCGCTGTCGCGCGTGCCGCTGCTCGAAACCTTCGGGCTGACCGTCGGCCCCGGCGCGATGCTCGCG CTGGCGTTCGCGGCGATTCTCGCGCCGCGCGTCGCGGCCGCGAACGGCCGTCCCCATGATCCGACAGGAGCTCGCGCATG A
Upstream 100 bases:
>100_bases TCACGCTCGACGGCACGCGCGACGTGTTGCGCAGCGTCGCGATCCGGCAGGCCGACGGCGACCATTCGACGATGCGCCTG CAACCCGTCCCGGCGAACTG
Downstream 100 bases:
>100_bases ACGCGCCGTCATCCGTTTCACCGCCGCAGCCCGGCGATGCGCGCCGCTGGAAGCCAACGCCGCTGATCGCGGGCACCGCC GCGCTGCATGCGGGCGCGCT
Product: exporter-like protein
Products: NA
Alternate protein names: Transmembrane Protein; Mmpl Exporter Transmembrane Protein; XanthomoNADin Exporter; MMPL Domain Protein; Exporter TRANSMEMBRANE PROTEIN; Phosphoglucomutase/Phosphomannomutase Alpha/Beta/Subunit
Number of amino acids: Translated: 826; Mature: 826
Protein sequence:
>826_residues MDERTRPTAPVTRRLPAWRQRAVLVWLLALVACAIAIARANFTADLSAFLPRAPSAGQRVLVEQLRDGIVSRLILVAIDG GDAATRAALSRRVAGTLRADRQFSAINNGEAVNDARDQQFVFDHRYLLSPAVTPQRFSADGLHQALGDSLDLLGSSAGLV AKAMLPHDPTGEVTALVDQLDSGAQPAVRDGVWASRDGTRAVLVVQTAAAGSDTDAQARAIDAVRRAFSAATQTLPNPAA YTLAMTGPGVFSVDTRDTIRHDVERLSTASLVLIVALLLTLYRSPRTLALGLLPVLTGIAAGIAAVSVAFGTVHGLTLGF GTTLIGEAVDYSIYLFVQSAQVGSRGAARPADAMRAWLAAYWPTIRLGVLTSVCGFASMLFSGFPGLVQLGLYSIVGLTA AALVTRYVLPHLRGEHVAIRDVSRIGAVLARAAAAAPRLRWPLAVLVLAACTTLVLHRESLWSRELAALSPVPARAQALD ARLRADVGAPDVRYLVVISAPTEQAALERAEQVAAQLQPLVDRGALAGFESPARYLPSDAAQRARQASLPDAEALAARMH AAVANQPISVRPELFAPFVADVEAARHAPLLTRADLRGTSMALAVDALLTERAGRWSAMLPLRAPDATRTASAAAPALDV APIRAAVARAGVPDALFVDMKAEADRLYVNYVHEDIRLSLAGFAAIAVLLLIALRSPRRVVRALAPLVAAVIVVTAGFAL AGVQLTILHLVGMLLIVAVGSNYALFFCKRDDAQPVTPYTLVSLLIANLATVAGFGLLALSRVPLLETFGLTVGPGAMLA LAFAAILAPRVAAANGRPHDPTGARA
Sequences:
>Translated_826_residues MDERTRPTAPVTRRLPAWRQRAVLVWLLALVACAIAIARANFTADLSAFLPRAPSAGQRVLVEQLRDGIVSRLILVAIDG GDAATRAALSRRVAGTLRADRQFSAINNGEAVNDARDQQFVFDHRYLLSPAVTPQRFSADGLHQALGDSLDLLGSSAGLV AKAMLPHDPTGEVTALVDQLDSGAQPAVRDGVWASRDGTRAVLVVQTAAAGSDTDAQARAIDAVRRAFSAATQTLPNPAA YTLAMTGPGVFSVDTRDTIRHDVERLSTASLVLIVALLLTLYRSPRTLALGLLPVLTGIAAGIAAVSVAFGTVHGLTLGF GTTLIGEAVDYSIYLFVQSAQVGSRGAARPADAMRAWLAAYWPTIRLGVLTSVCGFASMLFSGFPGLVQLGLYSIVGLTA AALVTRYVLPHLRGEHVAIRDVSRIGAVLARAAAAAPRLRWPLAVLVLAACTTLVLHRESLWSRELAALSPVPARAQALD ARLRADVGAPDVRYLVVISAPTEQAALERAEQVAAQLQPLVDRGALAGFESPARYLPSDAAQRARQASLPDAEALAARMH AAVANQPISVRPELFAPFVADVEAARHAPLLTRADLRGTSMALAVDALLTERAGRWSAMLPLRAPDATRTASAAAPALDV APIRAAVARAGVPDALFVDMKAEADRLYVNYVHEDIRLSLAGFAAIAVLLLIALRSPRRVVRALAPLVAAVIVVTAGFAL AGVQLTILHLVGMLLIVAVGSNYALFFCKRDDAQPVTPYTLVSLLIANLATVAGFGLLALSRVPLLETFGLTVGPGAMLA LAFAAILAPRVAAANGRPHDPTGARA >Mature_826_residues MDERTRPTAPVTRRLPAWRQRAVLVWLLALVACAIAIARANFTADLSAFLPRAPSAGQRVLVEQLRDGIVSRLILVAIDG GDAATRAALSRRVAGTLRADRQFSAINNGEAVNDARDQQFVFDHRYLLSPAVTPQRFSADGLHQALGDSLDLLGSSAGLV AKAMLPHDPTGEVTALVDQLDSGAQPAVRDGVWASRDGTRAVLVVQTAAAGSDTDAQARAIDAVRRAFSAATQTLPNPAA YTLAMTGPGVFSVDTRDTIRHDVERLSTASLVLIVALLLTLYRSPRTLALGLLPVLTGIAAGIAAVSVAFGTVHGLTLGF GTTLIGEAVDYSIYLFVQSAQVGSRGAARPADAMRAWLAAYWPTIRLGVLTSVCGFASMLFSGFPGLVQLGLYSIVGLTA AALVTRYVLPHLRGEHVAIRDVSRIGAVLARAAAAAPRLRWPLAVLVLAACTTLVLHRESLWSRELAALSPVPARAQALD ARLRADVGAPDVRYLVVISAPTEQAALERAEQVAAQLQPLVDRGALAGFESPARYLPSDAAQRARQASLPDAEALAARMH AAVANQPISVRPELFAPFVADVEAARHAPLLTRADLRGTSMALAVDALLTERAGRWSAMLPLRAPDATRTASAAAPALDV APIRAAVARAGVPDALFVDMKAEADRLYVNYVHEDIRLSLAGFAAIAVLLLIALRSPRRVVRALAPLVAAVIVVTAGFAL AGVQLTILHLVGMLLIVAVGSNYALFFCKRDDAQPVTPYTLVSLLIANLATVAGFGLLALSRVPLLETFGLTVGPGAMLA LAFAAILAPRVAAANGRPHDPTGARA
Specific function: Unknown
COG id: COG4258
COG function: function code R; Predicted exporter
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 86741; Mature: 86741
Theoretical pI: Translated: 10.13; Mature: 10.13
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDERTRPTAPVTRRLPAWRQRAVLVWLLALVACAIAIARANFTADLSAFLPRAPSAGQRV CCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCHHHH LVEQLRDGIVSRLILVAIDGGDAATRAALSRRVAGTLRADRQFSAINNGEAVNDARDQQF HHHHHHHHHHHEEEEEEECCCCHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCHH VFDHRYLLSPAVTPQRFSADGLHQALGDSLDLLGSSAGLVAKAMLPHDPTGEVTALVDQL HHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHHCCCCCHHHHHCCCCCCCCHHHHHHHHH DSGAQPAVRDGVWASRDGTRAVLVVQTAAAGSDTDAQARAIDAVRRAFSAATQTLPNPAA CCCCCCHHHCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCE YTLAMTGPGVFSVDTRDTIRHDVERLSTASLVLIVALLLTLYRSPRTLALGLLPVLTGIA EEEEECCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH AGIAAVSVAFGTVHGLTLGFGTTLIGEAVDYSIYLFVQSAQVGSRGAARPADAMRAWLAA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEEEECCCCCCCCCCCHHHHHHHHHH YWPTIRLGVLTSVCGFASMLFSGFPGLVQLGLYSIVGLTAAALVTRYVLPHLRGEHVAIR HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHH DVSRIGAVLARAAAAAPRLRWPLAVLVLAACTTLVLHRESLWSRELAALSPVPARAQALD HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH ARLRADVGAPDVRYLVVISAPTEQAALERAEQVAAQLQPLVDRGALAGFESPARYLPSDA HHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCHH AQRARQASLPDAEALAARMHAAVANQPISVRPELFAPFVADVEAARHAPLLTRADLRGTS HHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCEECCCCCCH MALAVDALLTERAGRWSAMLPLRAPDATRTASAAAPALDVAPIRAAVARAGVPDALFVDM HHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHCCCCHHHHHHHHHHHHCCCCCEEEEEC KAEADRLYVNYVHEDIRLSLAGFAAIAVLLLIALRSPRRVVRALAPLVAAVIVVTAGFAL CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH AGVQLTILHLVGMLLIVAVGSNYALFFCKRDDAQPVTPYTLVSLLIANLATVAGFGLLAL HHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH SRVPLLETFGLTVGPGAMLALAFAAILAPRVAAANGRPHDPTGARA HHCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC >Mature Secondary Structure MDERTRPTAPVTRRLPAWRQRAVLVWLLALVACAIAIARANFTADLSAFLPRAPSAGQRV CCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCHHHH LVEQLRDGIVSRLILVAIDGGDAATRAALSRRVAGTLRADRQFSAINNGEAVNDARDQQF HHHHHHHHHHHEEEEEEECCCCHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCHH VFDHRYLLSPAVTPQRFSADGLHQALGDSLDLLGSSAGLVAKAMLPHDPTGEVTALVDQL HHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHHCCCCCHHHHHCCCCCCCCHHHHHHHHH DSGAQPAVRDGVWASRDGTRAVLVVQTAAAGSDTDAQARAIDAVRRAFSAATQTLPNPAA CCCCCCHHHCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCE YTLAMTGPGVFSVDTRDTIRHDVERLSTASLVLIVALLLTLYRSPRTLALGLLPVLTGIA EEEEECCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH AGIAAVSVAFGTVHGLTLGFGTTLIGEAVDYSIYLFVQSAQVGSRGAARPADAMRAWLAA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEEEECCCCCCCCCCCHHHHHHHHHH YWPTIRLGVLTSVCGFASMLFSGFPGLVQLGLYSIVGLTAAALVTRYVLPHLRGEHVAIR HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHH DVSRIGAVLARAAAAAPRLRWPLAVLVLAACTTLVLHRESLWSRELAALSPVPARAQALD HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH ARLRADVGAPDVRYLVVISAPTEQAALERAEQVAAQLQPLVDRGALAGFESPARYLPSDA HHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCHH AQRARQASLPDAEALAARMHAAVANQPISVRPELFAPFVADVEAARHAPLLTRADLRGTS HHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCEECCCCCCH MALAVDALLTERAGRWSAMLPLRAPDATRTASAAAPALDVAPIRAAVARAGVPDALFVDM HHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHCCCCHHHHHHHHHHHHCCCCCEEEEEC KAEADRLYVNYVHEDIRLSLAGFAAIAVLLLIALRSPRRVVRALAPLVAAVIVVTAGFAL CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH AGVQLTILHLVGMLLIVAVGSNYALFFCKRDDAQPVTPYTLVSLLIANLATVAGFGLLAL HHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH SRVPLLETFGLTVGPGAMLALAFAAILAPRVAAANGRPHDPTGARA HHCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA