| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115352850
Identifier: 115352850
GI number: 115352850
Start: 3087497
End: 3088498
Strand: Direct
Name: 115352850
Synonym: Bamb_2799
Alternate gene names: NA
Gene position: 3087497-3088498 (Clockwise)
Preceding gene: 115352847
Following gene: 115352854
Centisome position: 86.81
GC content: 69.06
Gene sequence:
>1002_bases ATGCCCTGCCCGACCCGCCCCGTCCGTGTCCGCCCGCTGCTGGCGAGCCTCTGCTCGATCGCCGCGTTTTACGGCGCACC TGCCGACGCGCAGGAATTCTCGCTGTTCGCCGGCTCGCTGTGGGGCGGCGGCGACCGCTCGTATGCGTGGGCGTTCGACT ATCAGGAAGGCTTGAGCGCGCATACCGCGCTCGGGTTTACCTGGTACAACGAGGGCCACATACCGAATCATCACCGCGAT GGCCAGGCGGTGCAGTTCTGGGGCCGCGTGCCGCTCGAGCATCGCCGCTTCGTGCTGTCGGCCGGCGTCGGCCCGTATCG CTACTTCGACACCGTGCCGGCCGGCGAAGGCCGCGGCTACTCGAACACGCACGGCTGGGGCGTGCTGATGAGCGTGCGCG CCGCGTATTACACGTCGCACCGCTGGATCGCGCAGCTGCAGCTCAATCGCGCGCAGGTGTTCAGCGGCCCGGCCACGACG TCGGTGATGTTCGGCGTCGGCTACCAGCTCGATGCGCCCGACACGCCGGGCCCGCGCGACACCGCGCTGGCGCGCACGCG CAAGGTCACGAACAACGAAGTCACCGCGATGCTCGGCGAGACGATCCTCAACAGCCGCTCGTCGCCGTCGACGCTCGGCG GCAGTCTCGAATATCGGCGCGGCCTCACCCGCTCGATCGACTGGACCGCGACGTGGCTGTACGAAGGCGCGAAACAGGGC GTCCGTCGCAACGGCATCGCATCCCAGCTGTGGCTCACGCGCGCATTCCTGAACGACAAGGTCACGCTGTCGGCCGGCGC CGGCGCGTACGTCACGGTCGATCAGCACAATCGCGCAGCCGAGCCGAACGCGGCCGGCGGCCGGCTCTCCGGCATCGTGT CGATTTCGGCGAGCTACCGGATCTCGGACCGCTGGCTCACACGCGTCACGTGGAACCGCGTGGTCACGCGCTACGATCGC GACACCGACGTGATCCAGGCCGGCCTCGGCTACCGGTTCTAG
Upstream 100 bases:
>100_bases AGGTTGTTGTGCAAACCCGCGTCGACACCGGCTTGCGCGCGCGGGACAATGCCCGGGTGTTGTCGTGACTGGAAAGTGAA CCGTGCCGGCCCACCTCCCG
Downstream 100 bases:
>100_bases CCGGCGCGCGCCGCCTGCATCACGCGCGATAGCCGGGATCGATGCGATCGACGATGCGCTGCAAGGCGTCGAACGCGTCT TGCCCCGCGCCGTGCTTCGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 333; Mature: 332
Protein sequence:
>333_residues MPCPTRPVRVRPLLASLCSIAAFYGAPADAQEFSLFAGSLWGGGDRSYAWAFDYQEGLSAHTALGFTWYNEGHIPNHHRD GQAVQFWGRVPLEHRRFVLSAGVGPYRYFDTVPAGEGRGYSNTHGWGVLMSVRAAYYTSHRWIAQLQLNRAQVFSGPATT SVMFGVGYQLDAPDTPGPRDTALARTRKVTNNEVTAMLGETILNSRSSPSTLGGSLEYRRGLTRSIDWTATWLYEGAKQG VRRNGIASQLWLTRAFLNDKVTLSAGAGAYVTVDQHNRAAEPNAAGGRLSGIVSISASYRISDRWLTRVTWNRVVTRYDR DTDVIQAGLGYRF
Sequences:
>Translated_333_residues MPCPTRPVRVRPLLASLCSIAAFYGAPADAQEFSLFAGSLWGGGDRSYAWAFDYQEGLSAHTALGFTWYNEGHIPNHHRD GQAVQFWGRVPLEHRRFVLSAGVGPYRYFDTVPAGEGRGYSNTHGWGVLMSVRAAYYTSHRWIAQLQLNRAQVFSGPATT SVMFGVGYQLDAPDTPGPRDTALARTRKVTNNEVTAMLGETILNSRSSPSTLGGSLEYRRGLTRSIDWTATWLYEGAKQG VRRNGIASQLWLTRAFLNDKVTLSAGAGAYVTVDQHNRAAEPNAAGGRLSGIVSISASYRISDRWLTRVTWNRVVTRYDR DTDVIQAGLGYRF >Mature_332_residues PCPTRPVRVRPLLASLCSIAAFYGAPADAQEFSLFAGSLWGGGDRSYAWAFDYQEGLSAHTALGFTWYNEGHIPNHHRDG QAVQFWGRVPLEHRRFVLSAGVGPYRYFDTVPAGEGRGYSNTHGWGVLMSVRAAYYTSHRWIAQLQLNRAQVFSGPATTS VMFGVGYQLDAPDTPGPRDTALARTRKVTNNEVTAMLGETILNSRSSPSTLGGSLEYRRGLTRSIDWTATWLYEGAKQGV RRNGIASQLWLTRAFLNDKVTLSAGAGAYVTVDQHNRAAEPNAAGGRLSGIVSISASYRISDRWLTRVTWNRVVTRYDRD TDVIQAGLGYRF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36763; Mature: 36631
Theoretical pI: Translated: 9.95; Mature: 9.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPCPTRPVRVRPLLASLCSIAAFYGAPADAQEFSLFAGSLWGGGDRSYAWAFDYQEGLSA CCCCCCCEEHHHHHHHHHHHHHHHCCCCCHHHHHEEECCCCCCCCCCEEEEEEHHHCCCH HTALGFTWYNEGHIPNHHRDGQAVQFWGRVPLEHRRFVLSAGVGPYRYFDTVPAGEGRGY HHEEEEEEECCCCCCCCCCCCCEEEEECCCCHHHCEEEEECCCCCHHHCCCCCCCCCCCC SNTHGWGVLMSVRAAYYTSHRWIAQLQLNRAQVFSGPATTSVMFGVGYQLDAPDTPGPRD CCCCCHHHHHHHHHHHHHCCEEEEEEEECHHHEECCCCCCEEEEECCEEECCCCCCCCCH TALARTRKVTNNEVTAMLGETILNSRSSPSTLGGSLEYRRGLTRSIDWTATWLYEGAKQG HHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHH VRRNGIASQLWLTRAFLNDKVTLSAGAGAYVTVDQHNRAAEPNAAGGRLSGIVSISASYR HHHCCCHHHHHHHHHHHCCCEEEECCCCEEEEEECCCCCCCCCCCCCCEEEEEEEEECEE ISDRWLTRVTWNRVVTRYDRDTDVIQAGLGYRF ECCHHHHHHHHHHHHHHCCCCHHHHHHCCCCCC >Mature Secondary Structure PCPTRPVRVRPLLASLCSIAAFYGAPADAQEFSLFAGSLWGGGDRSYAWAFDYQEGLSA CCCCCCEEHHHHHHHHHHHHHHHCCCCCHHHHHEEECCCCCCCCCCEEEEEEHHHCCCH HTALGFTWYNEGHIPNHHRDGQAVQFWGRVPLEHRRFVLSAGVGPYRYFDTVPAGEGRGY HHEEEEEEECCCCCCCCCCCCCEEEEECCCCHHHCEEEEECCCCCHHHCCCCCCCCCCCC SNTHGWGVLMSVRAAYYTSHRWIAQLQLNRAQVFSGPATTSVMFGVGYQLDAPDTPGPRD CCCCCHHHHHHHHHHHHHCCEEEEEEEECHHHEECCCCCCEEEEECCEEECCCCCCCCCH TALARTRKVTNNEVTAMLGETILNSRSSPSTLGGSLEYRRGLTRSIDWTATWLYEGAKQG HHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHH VRRNGIASQLWLTRAFLNDKVTLSAGAGAYVTVDQHNRAAEPNAAGGRLSGIVSISASYR HHHCCCHHHHHHHHHHHCCCEEEECCCCEEEEEECCCCCCCCCCCCCCEEEEEEEEECEE ISDRWLTRVTWNRVVTRYDRDTDVIQAGLGYRF ECCHHHHHHHHHHHHHHCCCCHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA