Definition Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence.
Accession NC_008390
Length 3,556,545

Click here to switch to the map view.

The map label for this gene is yieH [H]

Identifier: 115352792

GI number: 115352792

Start: 3018474

End: 3019196

Strand: Direct

Name: yieH [H]

Synonym: Bamb_2741

Alternate gene names: 115352792

Gene position: 3018474-3019196 (Clockwise)

Preceding gene: 115352791

Following gene: 115352796

Centisome position: 84.87

GC content: 67.08

Gene sequence:

>723_bases
ATGATCGGCGTCGCCGACACCCGCCTTTTCACCACCATGCTCGATCACCTTATCTGCGACTGCGACGGCGTGCTCGTCGA
CAGCGAAGTCATTGCCGACCGCGTGCTGTTCGAAACGCTGTCCGCCACCTTCCCCCACCTCGATTTCGAAGACGCCGCGA
AGTCCGCGTTCGGCCAGCAGACGTCGCGCTTTCTCGCCGGGCTCGAAGCGCATTTCGGCATCCGGATGCCGGACGGCTTC
ATCGAGACCATCGAGCGCAACATCGAGACCGGTCTCGCGCAATCGCTCGCACCGATCACCGGCGTGCGCGATGCGTTGCT
GAAGGTCAGCCTGCCGGCCGCGGTGGTATCGAACAGCCGGCTCGTGCGCGTGCGCAGCTCGCTGAAACGCGCGTCCCTCA
CCGAAATCTTCGGCGATCGCGTGTTCAGCTCCGAGCAGGTCGCGCGGCCAAAGCCCTACCCTGACGTGTACCTGCATGCG
GCGAACACGCTCGGCGTCGCGCCGGCGCGCTGCATCGTCGTCGAGGACAGCGTGTCGGGCCTGAACGCCGCGCGCGCGGC
GGGCATGAAGACGATCGCGTTCGTCGGCGCGAGCCACATCCCCGACAACTACGCGGACGCGCTGCGCGCGATGGGCATCA
CGCGGATCATGCGCAGGATGGATGAACTGCCGGCGCTCGTCGCGGCCGGCCTGCGCGGCGAATTCGGCGACGTGCAGTCC
TGA

Upstream 100 bases:

>100_bases
GCGATACCGTGCCGCGTCCGGTACGCCGGATCGATCCGACCGCGCAAGCAGCTCGCCGAACGGTGCGCGGCACGGCCGCG
AAAGCACGTATCATGGCGGC

Downstream 100 bases:

>100_bases
CGAGCGGCCGCGCCGCAGCGACAGAAGCGGCGTGCGGCTCGATGCGCACGCCGTCCCGCGGGCGCATCGGCGCGCCCGCC
GTACCGGCTGTCAGGCCGGC

Product: HAD family hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 240

Protein sequence:

>240_residues
MIGVADTRLFTTMLDHLICDCDGVLVDSEVIADRVLFETLSATFPHLDFEDAAKSAFGQQTSRFLAGLEAHFGIRMPDGF
IETIERNIETGLAQSLAPITGVRDALLKVSLPAAVVSNSRLVRVRSSLKRASLTEIFGDRVFSSEQVARPKPYPDVYLHA
ANTLGVAPARCIVVEDSVSGLNAARAAGMKTIAFVGASHIPDNYADALRAMGITRIMRRMDELPALVAAGLRGEFGDVQS

Sequences:

>Translated_240_residues
MIGVADTRLFTTMLDHLICDCDGVLVDSEVIADRVLFETLSATFPHLDFEDAAKSAFGQQTSRFLAGLEAHFGIRMPDGF
IETIERNIETGLAQSLAPITGVRDALLKVSLPAAVVSNSRLVRVRSSLKRASLTEIFGDRVFSSEQVARPKPYPDVYLHA
ANTLGVAPARCIVVEDSVSGLNAARAAGMKTIAFVGASHIPDNYADALRAMGITRIMRRMDELPALVAAGLRGEFGDVQS
>Mature_240_residues
MIGVADTRLFTTMLDHLICDCDGVLVDSEVIADRVLFETLSATFPHLDFEDAAKSAFGQQTSRFLAGLEAHFGIRMPDGF
IETIERNIETGLAQSLAPITGVRDALLKVSLPAAVVSNSRLVRVRSSLKRASLTEIFGDRVFSSEQVARPKPYPDVYLHA
ANTLGVAPARCIVVEDSVSGLNAARAAGMKTIAFVGASHIPDNYADALRAMGITRIMRRMDELPALVAAGLRGEFGDVQS

Specific function: Catalyzes the dephosphorylation of the artificial chromogenic substrate p-nitrophenyl phosphate (pNPP) and of the natural substrates phosphoenolpyruvate and AMP [H]

COG id: COG0637

COG function: function code R; Predicted phosphatase/phosphohexomutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the HAD-like hydrolase superfamily. CbbY/CbbZ/Gph/YieH family [H]

Homologues:

Organism=Escherichia coli, GI1790151, Length=184, Percent_Identity=31.5217391304348, Blast_Score=84, Evalue=9e-18,
Organism=Escherichia coli, GI1788021, Length=181, Percent_Identity=30.3867403314917, Blast_Score=64, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005834
- InterPro:   IPR023214
- InterPro:   IPR006439
- InterPro:   IPR006402
- InterPro:   IPR005833 [H]

Pfam domain/function: PF00702 Hydrolase [H]

EC number: NA

Molecular weight: Translated: 25834; Mature: 25834

Theoretical pI: Translated: 5.65; Mature: 5.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIGVADTRLFTTMLDHLICDCDGVLVDSEVIADRVLFETLSATFPHLDFEDAAKSAFGQQ
CCCCHHHHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
TSRFLAGLEAHFGIRMPDGFIETIERNIETGLAQSLAPITGVRDALLKVSLPAAVVSNSR
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCH
LVRVRSSLKRASLTEIFGDRVFSSEQVARPKPYPDVYLHAANTLGVAPARCIVVEDSVSG
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEEECCCCC
LNAARAAGMKTIAFVGASHIPDNYADALRAMGITRIMRRMDELPALVAAGLRGEFGDVQS
HHHHHHHCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MIGVADTRLFTTMLDHLICDCDGVLVDSEVIADRVLFETLSATFPHLDFEDAAKSAFGQQ
CCCCHHHHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
TSRFLAGLEAHFGIRMPDGFIETIERNIETGLAQSLAPITGVRDALLKVSLPAAVVSNSR
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCH
LVRVRSSLKRASLTEIFGDRVFSSEQVARPKPYPDVYLHAANTLGVAPARCIVVEDSVSG
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEEECCCCC
LNAARAAGMKTIAFVGASHIPDNYADALRAMGITRIMRRMDELPALVAAGLRGEFGDVQS
HHHHHHHCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7686882; 9278503 [H]