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The map label for this gene is ygfU [H]

Identifier: 115352704

GI number: 115352704

Start: 2920030

End: 2921406

Strand: Direct

Name: ygfU [H]

Synonym: Bamb_2653

Alternate gene names: 115352704

Gene position: 2920030-2921406 (Clockwise)

Preceding gene: 115352701

Following gene: 115352708

Centisome position: 82.1

GC content: 65.65

Gene sequence:

>1377_bases
ATGCAATCGAACACGGTCCATCCGTGCGATGAGGTGCTGCCGACCGGCAAGCTTGTAACGCTTGGTCTGCAGCACGTCCT
CGTCATGTACGCCGGCGCCGTCGCCGTGCCGCTTATCGTCGGCGGCGCGCTGAAGCTGCCGAAAGACCAGATCGCGTTCC
TGATCAGCGCCGATCTGTTTTCGTGCGGCATCGCCACGCTGATCCAGACGCTCGGCCTGTGGATCTTCGGAATCCGCCTG
CCCGTCATCATGGGCTGCACGTTCGCCGCGGTCGGCCCGATGATCGCGATCGGGACCAACCCCGGCCTCGGCATTCTCGA
CATCTTCGGCTCGACCATCGCGGCCGGCATCATCGGCATCGTGCTCGCGCCGATGATCGGCAAGCTGCTGCGGTTCTTCC
CGCCGGTAGTGGTCGGCACCGTGATCGCGGTGATCGGGCTGTCGCTGATGGAAGTCGGGATCAACTGGGCGGCCGGCGGC
GTCGGCAATCCCGAATACGGCAGCCCCGTCTACCTCGGCCTGTCGCTGCTCGTGCTCACGCTGATCCTGCTGATCAACAA
GTTCGGCCGCGGCTTCCTCGCGAACATCTCGGTGCTGCTCGGCATCGTCGCCGGCTTCGTGATCGCGTTTGCGGTCGGCC
GCGTGAATACCGACGGCGTGGCGCTCGCGCCGTGGGTCGGCTTCGTGATGCCGTTCCACTTCGGCATGCCGCATTTCGAC
CCGCTGTCGATCGCGACGATGGTGACGGTGATGTTCGTCACGTTCATCGAATCGACCGGCATGTTCCTCGCGGTCGGCGA
CATGGTCGATCGTCCGGTCAACCAGGACCGTCTCGTGCGCGGCCTGCGCGTCGACGGCCTCGGCACGCTGATCGGCGGCA
TCTTCAACTCGTTCCCGCACACGTCGTTCTCGCAGAACGTCGGCCTGATCGGCGTGACGGGCGTGAAGAGCCGGTACGTC
TGCGCGACGGGCGGCGTGATCCTGGTGCTGCTCGGCCTGTTCCCGAAGATGGCGCAGGTTGTCGCGTCGGTGCCGCCGTT
CGTGCTCGGCGGCGCGGGCATCGTGATGTTCGGGATGGTGGCGGCCAACGGCATCAAGGTGCTGTCGAAGGTCGACTTCG
TGAACAACACGCACAACCTGTTCATCGTCGCGGTGAGCGTCGGCATGGGCCTCGTGCCGGTCGTGTCGCCGCACTTCTTC
TCGAAGCTGCCGCCCGCGCTCGCACCGATCCTGCACAGCGGCATCCTGCTCGCGTCGGCCTCCGCCGTGATCCTGAACAT
CGTGTTCAACGGCGTGAAGGGCGAGAAGGATGCGCGTTGCGAGATCCGTCGCGCAGGACATGACTTCGACGGGCGCCCGG
CCGACGTGCATCACTGA

Upstream 100 bases:

>100_bases
GAACCTGCAAAGAGCGGAATAGAACCCAGTGCTCTTGTTGCGATGGTGCATTCCGCATAACTTCGTACCACCCCGAAAAC
AAGATCATGGAGTGAGACAG

Downstream 100 bases:

>100_bases
TCGGTCCGCGCGCCGGATGCACGGCGCGACACGGCAAACGAAAAACGCCACGGCAAGCCGTGGCGTTTTGCTTTGCTGCG
GAGAACCGCAGCGGAGATGA

Product: uracil-xanthine permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 458; Mature: 458

Protein sequence:

>458_residues
MQSNTVHPCDEVLPTGKLVTLGLQHVLVMYAGAVAVPLIVGGALKLPKDQIAFLISADLFSCGIATLIQTLGLWIFGIRL
PVIMGCTFAAVGPMIAIGTNPGLGILDIFGSTIAAGIIGIVLAPMIGKLLRFFPPVVVGTVIAVIGLSLMEVGINWAAGG
VGNPEYGSPVYLGLSLLVLTLILLINKFGRGFLANISVLLGIVAGFVIAFAVGRVNTDGVALAPWVGFVMPFHFGMPHFD
PLSIATMVTVMFVTFIESTGMFLAVGDMVDRPVNQDRLVRGLRVDGLGTLIGGIFNSFPHTSFSQNVGLIGVTGVKSRYV
CATGGVILVLLGLFPKMAQVVASVPPFVLGGAGIVMFGMVAANGIKVLSKVDFVNNTHNLFIVAVSVGMGLVPVVSPHFF
SKLPPALAPILHSGILLASASAVILNIVFNGVKGEKDARCEIRRAGHDFDGRPADVHH

Sequences:

>Translated_458_residues
MQSNTVHPCDEVLPTGKLVTLGLQHVLVMYAGAVAVPLIVGGALKLPKDQIAFLISADLFSCGIATLIQTLGLWIFGIRL
PVIMGCTFAAVGPMIAIGTNPGLGILDIFGSTIAAGIIGIVLAPMIGKLLRFFPPVVVGTVIAVIGLSLMEVGINWAAGG
VGNPEYGSPVYLGLSLLVLTLILLINKFGRGFLANISVLLGIVAGFVIAFAVGRVNTDGVALAPWVGFVMPFHFGMPHFD
PLSIATMVTVMFVTFIESTGMFLAVGDMVDRPVNQDRLVRGLRVDGLGTLIGGIFNSFPHTSFSQNVGLIGVTGVKSRYV
CATGGVILVLLGLFPKMAQVVASVPPFVLGGAGIVMFGMVAANGIKVLSKVDFVNNTHNLFIVAVSVGMGLVPVVSPHFF
SKLPPALAPILHSGILLASASAVILNIVFNGVKGEKDARCEIRRAGHDFDGRPADVHH
>Mature_458_residues
MQSNTVHPCDEVLPTGKLVTLGLQHVLVMYAGAVAVPLIVGGALKLPKDQIAFLISADLFSCGIATLIQTLGLWIFGIRL
PVIMGCTFAAVGPMIAIGTNPGLGILDIFGSTIAAGIIGIVLAPMIGKLLRFFPPVVVGTVIAVIGLSLMEVGINWAAGG
VGNPEYGSPVYLGLSLLVLTLILLINKFGRGFLANISVLLGIVAGFVIAFAVGRVNTDGVALAPWVGFVMPFHFGMPHFD
PLSIATMVTVMFVTFIESTGMFLAVGDMVDRPVNQDRLVRGLRVDGLGTLIGGIFNSFPHTSFSQNVGLIGVTGVKSRYV
CATGGVILVLLGLFPKMAQVVASVPPFVLGGAGIVMFGMVAANGIKVLSKVDFVNNTHNLFIVAVSVGMGLVPVVSPHFF
SKLPPALAPILHSGILLASASAVILNIVFNGVKGEKDARCEIRRAGHDFDGRPADVHH

Specific function: Unknown

COG id: COG2233

COG function: function code F; Xanthine/uracil permeases

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xanthine/uracil permease family. Nucleobase:cation symporter-2 (NCS2) (TC 2.A.40) subfamily [H]

Homologues:

Organism=Homo sapiens, GI44680148, Length=517, Percent_Identity=26.4990328820116, Blast_Score=129, Evalue=6e-30,
Organism=Homo sapiens, GI40316845, Length=517, Percent_Identity=26.4990328820116, Blast_Score=129, Evalue=6e-30,
Organism=Homo sapiens, GI44680145, Length=485, Percent_Identity=25.5670103092783, Blast_Score=116, Evalue=5e-26,
Organism=Homo sapiens, GI44680143, Length=489, Percent_Identity=25.3578732106339, Blast_Score=114, Evalue=1e-25,
Organism=Homo sapiens, GI222080105, Length=510, Percent_Identity=23.5294117647059, Blast_Score=79, Evalue=7e-15,
Organism=Homo sapiens, GI222080107, Length=518, Percent_Identity=23.1660231660232, Blast_Score=76, Evalue=7e-14,
Organism=Escherichia coli, GI87082181, Length=441, Percent_Identity=59.1836734693878, Blast_Score=520, Evalue=1e-149,
Organism=Escherichia coli, GI1790087, Length=443, Percent_Identity=30.9255079006772, Blast_Score=182, Evalue=3e-47,
Organism=Escherichia coli, GI87082178, Length=457, Percent_Identity=29.5404814004376, Blast_Score=153, Evalue=3e-38,
Organism=Escherichia coli, GI1788843, Length=386, Percent_Identity=29.2746113989637, Blast_Score=131, Evalue=1e-31,
Organism=Escherichia coli, GI87081818, Length=410, Percent_Identity=30.2439024390244, Blast_Score=120, Evalue=2e-28,
Organism=Caenorhabditis elegans, GI17558856, Length=509, Percent_Identity=25.9332023575639, Blast_Score=96, Evalue=4e-20,
Organism=Caenorhabditis elegans, GI17541904, Length=464, Percent_Identity=23.0603448275862, Blast_Score=86, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI17542262, Length=453, Percent_Identity=25.3863134657837, Blast_Score=85, Evalue=9e-17,
Organism=Caenorhabditis elegans, GI17542260, Length=195, Percent_Identity=29.2307692307692, Blast_Score=73, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI71993493, Length=195, Percent_Identity=28.7179487179487, Blast_Score=71, Evalue=1e-12,
Organism=Drosophila melanogaster, GI21356175, Length=440, Percent_Identity=25.9090909090909, Blast_Score=95, Evalue=8e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017588
- InterPro:   IPR006042
- InterPro:   IPR006043 [H]

Pfam domain/function: PF00860 Xan_ur_permease [H]

EC number: NA

Molecular weight: Translated: 47773; Mature: 47773

Theoretical pI: Translated: 8.75; Mature: 8.75

Prosite motif: PS01116 XANTH_URACIL_PERMASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure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HHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]