| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115352673
Identifier: 115352673
GI number: 115352673
Start: 2885673
End: 2886338
Strand: Direct
Name: 115352673
Synonym: Bamb_2622
Alternate gene names: NA
Gene position: 2885673-2886338 (Clockwise)
Preceding gene: 115352672
Following gene: 115352674
Centisome position: 81.14
GC content: 72.37
Gene sequence:
>666_bases TTGAGCATCGGTCTCTCCGCGCCGCTCGCGCTGTGGGCGGCCGTGCTCGCGAGCGGTGTCTATCACGGACTCAATCCGGC GATGGGCTGGCCGCTCGCGGTGTCGAACGCACTGATGACGCGCCGCGGCGGCGCGCTGCTCGCGGCGCTCGGCTATCTCG CGCTCGGCCATGCGCTCGCTGTCTTCATGGTGATGCTGCCGTTCGGGCTGCTCGCCGCGTTGCTCGCGTGGCAGTCGGCG ATCCGGATCGGCGCGAGCGCGCTCGTGATCGGCTTCGGCGCGGTGCTGCTGATCCGGCGTCGCCACCCGCGCGTGCTTGC GCGGATCGCGCCCGCGCGGCTCGGGCTATGGTCGTTCGCGATCGCGTTGGCACATGGCGCGGGACTGATGCTGGTGCCGA TCTATCTCGGGCTCTGCGGGCTCGACCGGGACGCCGGCCATCGCGCGGCGGCCACGCTCGTCGACGCGCATCTCGGGATG GCCCTCGTGGTCGCAGCCGTGCACGCGGCCGCGATGATCGGCGCGGGCGGCGTGCTCGCGTGGCTCGTGTACCGCTATCT CGGGCTGAAGTTCGTCGCGCGGAGCTGGTTCAACCTCGACGCGGTGTGGGCGTCGAGCCTGATCCTGACGGGCGCGCTGT CGCTCGGGCTGGCGGCGGCGCGCTAG
Upstream 100 bases:
>100_bases ACTACTGGGTCGAGTTCCCCGACGGCTATCGCGCGCACCAGATCCGGCTCGAGGGCGGCGACTGCTCGACGGACTCGTTC TGCTATCCGTCGGTCAAGCG
Downstream 100 bases:
>100_bases CACCGCCGCACGGCGCGGCCGCAGATCACGCGCGGTAAAACGCGACAGAACGGCCGTTGCGCGTCGATCGCGGCGCCACG CGACAGTGTTCGCTACCTCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 221; Mature: 220
Protein sequence:
>221_residues MSIGLSAPLALWAAVLASGVYHGLNPAMGWPLAVSNALMTRRGGALLAALGYLALGHALAVFMVMLPFGLLAALLAWQSA IRIGASALVIGFGAVLLIRRRHPRVLARIAPARLGLWSFAIALAHGAGLMLVPIYLGLCGLDRDAGHRAAATLVDAHLGM ALVVAAVHAAAMIGAGGVLAWLVYRYLGLKFVARSWFNLDAVWASSLILTGALSLGLAAAR
Sequences:
>Translated_221_residues MSIGLSAPLALWAAVLASGVYHGLNPAMGWPLAVSNALMTRRGGALLAALGYLALGHALAVFMVMLPFGLLAALLAWQSA IRIGASALVIGFGAVLLIRRRHPRVLARIAPARLGLWSFAIALAHGAGLMLVPIYLGLCGLDRDAGHRAAATLVDAHLGM ALVVAAVHAAAMIGAGGVLAWLVYRYLGLKFVARSWFNLDAVWASSLILTGALSLGLAAAR >Mature_220_residues SIGLSAPLALWAAVLASGVYHGLNPAMGWPLAVSNALMTRRGGALLAALGYLALGHALAVFMVMLPFGLLAALLAWQSAI RIGASALVIGFGAVLLIRRRHPRVLARIAPARLGLWSFAIALAHGAGLMLVPIYLGLCGLDRDAGHRAAATLVDAHLGMA LVVAAVHAAAMIGAGGVLAWLVYRYLGLKFVARSWFNLDAVWASSLILTGALSLGLAAAR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22841; Mature: 22710
Theoretical pI: Translated: 11.96; Mature: 11.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIGLSAPLALWAAVLASGVYHGLNPAMGWPLAVSNALMTRRGGALLAALGYLALGHALA CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH VFMVMLPFGLLAALLAWQSAIRIGASALVIGFGAVLLIRRRHPRVLARIAPARLGLWSFA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH IALAHGAGLMLVPIYLGLCGLDRDAGHRAAATLVDAHLGMALVVAAVHAAAMIGAGGVLA HHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH WLVYRYLGLKFVARSWFNLDAVWASSLILTGALSLGLAAAR HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure SIGLSAPLALWAAVLASGVYHGLNPAMGWPLAVSNALMTRRGGALLAALGYLALGHALA CCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH VFMVMLPFGLLAALLAWQSAIRIGASALVIGFGAVLLIRRRHPRVLARIAPARLGLWSFA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH IALAHGAGLMLVPIYLGLCGLDRDAGHRAAATLVDAHLGMALVVAAVHAAAMIGAGGVLA HHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH WLVYRYLGLKFVARSWFNLDAVWASSLILTGALSLGLAAAR HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA